data_3KAA # _model_server_result.job_id YHWrXIxZzQ1pV5MBccOjRw _model_server_result.datetime_utc '2025-07-26 00:57:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kaa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":120}' # _entry.id 3KAA # _exptl.entry_id 3KAA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 455.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KAA _cell.length_a 71.922 _cell.length_b 71.922 _cell.length_c 263.579 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KAA _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E 1 1 B,C,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 19 A CYS 19 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 33 A CYS 33 1_555 A SG CYS 44 A CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 A SG CYS 39 A CYS 39 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf4 B SG CYS 19 B CYS 19 1_555 B SG CYS 92 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 33 B CYS 33 1_555 B SG CYS 44 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 39 B CYS 39 1_555 B SG CYS 91 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C18 H34 N O10 P' _chem_comp.formula_weight 455.437 _chem_comp.id PSF _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PHOSPHATIDYLSERINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 P PSF sing 277 n n O2 C2 PSF sing 278 n n O1 P PSF sing 279 n n O1 CB PSF sing 280 n n P O4 PSF doub 281 n n P O3 PSF sing 282 n n O3 HO3 PSF sing 283 n n C2 C3 PSF sing 284 n n C2 H21 PSF sing 285 n n C2 H22 PSF sing 286 n n C3 O11 PSF sing 287 n n C3 C4 PSF sing 288 n n C3 H31 PSF sing 289 n n O11 C1 PSF sing 290 n n O12 C1 PSF doub 291 n n C1 C13 PSF sing 292 n n C4 O52 PSF sing 293 n n C4 H41 PSF sing 294 n n C4 H42 PSF sing 295 n n C5 O51 PSF doub 296 n n C5 O52 PSF sing 297 n n C5 C6 PSF sing 298 n n C6 C7 PSF sing 299 n n C6 H61 PSF sing 300 n n C6 H62 PSF sing 301 n n C7 C8 PSF sing 302 n n C7 H71 PSF sing 303 n n C7 H72 PSF sing 304 n n C13 C14 PSF sing 305 n n C13 H131 PSF sing 306 n n C13 H132 PSF sing 307 n n C14 C15 PSF sing 308 n n C14 H141 PSF sing 309 n n C14 H142 PSF sing 310 n n C15 C16 PSF sing 311 n n C15 H151 PSF sing 312 n n C15 H152 PSF sing 313 n n N CA PSF sing 314 n n N H1 PSF sing 315 n n N H2 PSF sing 316 n n CA CB PSF sing 317 n n CA C PSF sing 318 n n CA HA PSF sing 319 n n CB HB1 PSF sing 320 n n CB HB2 PSF sing 321 n n C OT1 PSF doub 322 n n C OT2 PSF sing 323 n n OT2 HXT PSF sing 324 n n C8 C9 PSF sing 325 n n C8 H81 PSF sing 326 n n C8 H82 PSF sing 327 n n C9 C10 PSF sing 328 n n C9 H91 PSF sing 329 n n C9 H92 PSF sing 330 n n C10 H101 PSF sing 331 n n C10 H102 PSF sing 332 n n C10 H103 PSF sing 333 n n C16 C17 PSF sing 334 n n C16 H161 PSF sing 335 n n C16 H162 PSF sing 336 n n C17 H171 PSF sing 337 n n C17 H172 PSF sing 338 n n C17 H173 PSF sing 339 n n # _atom_sites.entry_id 3KAA _atom_sites.fract_transf_matrix[1][1] 0.013904 _atom_sites.fract_transf_matrix[1][2] 0.008027 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016055 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003794 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA B 1 119 114 CA CA . D 3 PSF B 1 120 115 PSF PSF . E 4 HOH A 1 119 113 HOH HOH . E 4 HOH A 2 120 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 PSF . . . D 3 25.279 -14.441 41.627 1 110.99 ? O2 PSF 120 B 1 HETATM 2 O O1 PSF . . . D 3 23.941 -12.494 40.877 1 121.3 ? O1 PSF 120 B 1 HETATM 3 P P PSF . . . D 3 24.029 -13.542 42.102 1 71.86 ? P PSF 120 B 1 HETATM 4 O O4 PSF . . . D 3 24.421 -12.803 43.359 1 78.27 ? O4 PSF 120 B 1 HETATM 5 O O3 PSF . . . D 3 22.79 -14.408 42.112 1 61.86 ? O3 PSF 120 B 1 HETATM 6 C C2 PSF . . . D 3 25.253 -15.868 41.666 1 110.14 ? C2 PSF 120 B 1 HETATM 7 C C3 PSF . . . D 3 26.557 -16.386 41.061 1 108.77 ? C3 PSF 120 B 1 HETATM 8 O O11 PSF . . . D 3 26.619 -17.816 41.086 1 105.92 ? O11 PSF 120 B 1 HETATM 9 C C4 PSF . . . D 3 27.74 -15.798 41.824 1 111.67 ? C4 PSF 120 B 1 HETATM 10 O O52 PSF . . . D 3 28.945 -16.184 41.161 1 115.25 ? O52 PSF 120 B 1 HETATM 11 N N PSF . . . D 3 22.757 -10.471 39.16 1 111.56 ? N PSF 120 B 1 HETATM 12 C CA PSF . . . D 3 24.078 -10.356 39.746 1 112.88 ? CA PSF 120 B 1 HETATM 13 C CB PSF . . . D 3 24.122 -11.095 41.077 1 118.1 ? CB PSF 120 B 1 HETATM 14 C C PSF . . . D 3 25.083 -10.967 38.821 1 110.55 ? C PSF 120 B 1 HETATM 15 O OT1 PSF . . . D 3 24.679 -11.442 37.738 1 110.85 ? OT1 PSF 120 B 1 HETATM 16 O OT2 PSF . . . D 3 26.281 -10.977 39.171 1 109.77 ? OT2 PSF 120 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #