data_3KAC # _model_server_result.job_id SFfYqHLLCNdQiCAKCO-HhA _model_server_result.datetime_utc '2024-11-17 11:09:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kac # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3KAC # _exptl.entry_id 3KAC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 190.199 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-(1H-benzimidazol-2-yl)propanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.11 _cell.angle_gamma 90 _cell.entry_id 3KAC _cell.length_a 118.064 _cell.length_b 36.576 _cell.length_c 51.328 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KAC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H10 N2 O2' _chem_comp.formula_weight 190.199 _chem_comp.id 4BX _chem_comp.mon_nstd_flag . _chem_comp.name '3-(1H-benzimidazol-2-yl)propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C1 4BX doub 1 n y C1 C2 4BX sing 2 n y C1 H1 4BX sing 3 n n C2 C3 4BX doub 4 n y C2 H2 4BX sing 5 n n C7 C3 4BX sing 6 n y C3 H3 4BX sing 7 n n C4 C6 4BX sing 8 n y C4 H4 4BX sing 9 n n N5 C9 4BX sing 10 n y N5 C6 4BX sing 11 n y C6 C7 4BX doub 12 n y N8 C7 4BX sing 13 n y C9 N8 4BX doub 14 n y C10 C9 4BX sing 15 n n C11 C10 4BX sing 16 n n C10 H10 4BX sing 17 n n C10 H10A 4BX sing 18 n n C12 C11 4BX sing 19 n n C11 H11 4BX sing 20 n n C11 H11A 4BX sing 21 n n O13 C12 4BX doub 22 n n C12 O14 4BX sing 23 n n O14 HO14 4BX sing 24 n n N5 HN5 4BX sing 25 n n # _atom_sites.entry_id 3KAC _atom_sites.fract_transf_matrix[1][1] 0.00847 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001663 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02734 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4BX A 1 1 1 4BX 4BX . D 2 4BX B 1 1 1 4BX 4BX . E 3 HOH A 1 4 4 HOH HOH . E 3 HOH A 2 5 5 HOH HOH . E 3 HOH A 3 6 6 HOH HOH . E 3 HOH A 4 7 7 HOH HOH . E 3 HOH A 5 9 9 HOH HOH . E 3 HOH A 6 10 10 HOH HOH . E 3 HOH A 7 11 11 HOH HOH . E 3 HOH A 8 12 12 HOH HOH . E 3 HOH A 9 13 13 HOH HOH . E 3 HOH A 10 15 15 HOH HOH . E 3 HOH A 11 18 18 HOH HOH . E 3 HOH A 12 21 21 HOH HOH . E 3 HOH A 13 23 23 HOH HOH . E 3 HOH A 14 24 24 HOH HOH . E 3 HOH A 15 25 25 HOH HOH . E 3 HOH A 16 26 26 HOH HOH . E 3 HOH A 17 29 29 HOH HOH . E 3 HOH A 18 30 30 HOH HOH . E 3 HOH A 19 32 32 HOH HOH . E 3 HOH A 20 33 33 HOH HOH . E 3 HOH A 21 35 35 HOH HOH . E 3 HOH A 22 38 38 HOH HOH . E 3 HOH A 23 40 40 HOH HOH . E 3 HOH A 24 164 1 HOH HOH . E 3 HOH A 25 165 165 HOH HOH . E 3 HOH A 26 166 166 HOH HOH . E 3 HOH A 27 167 41 HOH HOH . E 3 HOH A 28 168 168 HOH HOH . E 3 HOH A 29 169 44 HOH HOH . E 3 HOH A 30 170 46 HOH HOH . E 3 HOH A 31 171 171 HOH HOH . E 3 HOH A 32 172 47 HOH HOH . E 3 HOH A 33 173 48 HOH HOH . E 3 HOH A 34 174 174 HOH HOH . E 3 HOH A 35 175 49 HOH HOH . E 3 HOH A 36 176 51 HOH HOH . E 3 HOH A 37 177 177 HOH HOH . E 3 HOH A 38 178 178 HOH HOH . E 3 HOH A 39 179 179 HOH HOH . E 3 HOH A 40 180 54 HOH HOH . E 3 HOH A 41 181 56 HOH HOH . E 3 HOH A 42 182 182 HOH HOH . E 3 HOH A 43 183 59 HOH HOH . E 3 HOH A 44 184 184 HOH HOH . E 3 HOH A 45 185 60 HOH HOH . E 3 HOH A 46 186 61 HOH HOH . E 3 HOH A 47 187 63 HOH HOH . E 3 HOH A 48 188 188 HOH HOH . E 3 HOH A 49 189 189 HOH HOH . E 3 HOH A 50 190 64 HOH HOH . E 3 HOH A 51 191 65 HOH HOH . E 3 HOH A 52 192 192 HOH HOH . E 3 HOH A 53 193 193 HOH HOH . E 3 HOH A 54 194 194 HOH HOH . E 3 HOH A 55 195 66 HOH HOH . E 3 HOH A 56 196 67 HOH HOH . E 3 HOH A 57 197 197 HOH HOH . E 3 HOH A 58 198 198 HOH HOH . E 3 HOH A 59 199 68 HOH HOH . E 3 HOH A 60 200 71 HOH HOH . E 3 HOH A 61 201 201 HOH HOH . E 3 HOH A 62 202 75 HOH HOH . E 3 HOH A 63 203 77 HOH HOH . E 3 HOH A 64 204 80 HOH HOH . E 3 HOH A 65 205 82 HOH HOH . E 3 HOH A 66 206 206 HOH HOH . E 3 HOH A 67 207 207 HOH HOH . E 3 HOH A 68 208 208 HOH HOH . E 3 HOH A 69 209 84 HOH HOH . E 3 HOH A 70 210 210 HOH HOH . E 3 HOH A 71 211 85 HOH HOH . E 3 HOH A 72 212 87 HOH HOH . E 3 HOH A 73 213 213 HOH HOH . E 3 HOH A 74 214 89 HOH HOH . E 3 HOH A 75 215 91 HOH HOH . E 3 HOH A 76 216 93 HOH HOH . E 3 HOH A 77 217 96 HOH HOH . E 3 HOH A 78 218 99 HOH HOH . E 3 HOH A 79 219 101 HOH HOH . E 3 HOH A 80 220 103 HOH HOH . E 3 HOH A 81 221 221 HOH HOH . E 3 HOH A 82 222 104 HOH HOH . E 3 HOH A 83 223 105 HOH HOH . E 3 HOH A 84 224 106 HOH HOH . E 3 HOH A 85 225 225 HOH HOH . E 3 HOH A 86 226 214 HOH HOH . E 3 HOH A 87 227 227 HOH HOH . E 3 HOH A 88 228 109 HOH HOH . E 3 HOH A 89 229 113 HOH HOH . E 3 HOH A 90 230 230 HOH HOH . E 3 HOH A 91 231 115 HOH HOH . E 3 HOH A 92 232 232 HOH HOH . E 3 HOH A 93 233 116 HOH HOH . E 3 HOH A 94 234 123 HOH HOH . E 3 HOH A 95 235 124 HOH HOH . E 3 HOH A 96 236 126 HOH HOH . E 3 HOH A 97 237 127 HOH HOH . E 3 HOH A 98 238 134 HOH HOH . E 3 HOH A 99 239 137 HOH HOH . E 3 HOH A 100 240 240 HOH HOH . E 3 HOH A 101 241 139 HOH HOH . E 3 HOH A 102 242 142 HOH HOH . E 3 HOH A 103 243 144 HOH HOH . E 3 HOH A 104 244 149 HOH HOH . E 3 HOH A 105 245 150 HOH HOH . E 3 HOH A 106 246 151 HOH HOH . E 3 HOH A 107 247 153 HOH HOH . E 3 HOH A 108 248 248 HOH HOH . E 3 HOH A 109 249 155 HOH HOH . E 3 HOH A 110 250 156 HOH HOH . E 3 HOH A 111 251 251 HOH HOH . E 3 HOH A 112 252 252 HOH HOH . E 3 HOH A 113 253 253 HOH HOH . E 3 HOH A 114 254 158 HOH HOH . E 3 HOH A 115 255 255 HOH HOH . E 3 HOH A 116 256 256 HOH HOH . E 3 HOH A 117 257 257 HOH HOH . E 3 HOH A 118 258 160 HOH HOH . E 3 HOH A 119 261 261 HOH HOH . E 3 HOH A 120 262 262 HOH HOH . E 3 HOH A 121 263 263 HOH HOH . E 3 HOH A 122 265 265 HOH HOH . E 3 HOH A 123 268 268 HOH HOH . E 3 HOH A 124 269 269 HOH HOH . E 3 HOH A 125 270 270 HOH HOH . E 3 HOH A 126 272 272 HOH HOH . E 3 HOH A 127 273 273 HOH HOH . E 3 HOH A 128 274 274 HOH HOH . E 3 HOH A 129 275 275 HOH HOH . E 3 HOH A 130 277 277 HOH HOH . F 3 HOH B 1 2 2 HOH HOH . F 3 HOH B 2 3 3 HOH HOH . F 3 HOH B 3 8 8 HOH HOH . F 3 HOH B 4 14 14 HOH HOH . F 3 HOH B 5 16 16 HOH HOH . F 3 HOH B 6 19 19 HOH HOH . F 3 HOH B 7 20 20 HOH HOH . F 3 HOH B 8 22 22 HOH HOH . F 3 HOH B 9 27 27 HOH HOH . F 3 HOH B 10 28 28 HOH HOH . F 3 HOH B 11 31 31 HOH HOH . F 3 HOH B 12 34 34 HOH HOH . F 3 HOH B 13 36 36 HOH HOH . F 3 HOH B 14 39 39 HOH HOH . F 3 HOH B 15 164 164 HOH HOH . F 3 HOH B 16 165 42 HOH HOH . F 3 HOH B 17 166 43 HOH HOH . F 3 HOH B 18 167 167 HOH HOH . F 3 HOH B 19 168 45 HOH HOH . F 3 HOH B 20 169 169 HOH HOH . F 3 HOH B 21 170 170 HOH HOH . F 3 HOH B 22 171 50 HOH HOH . F 3 HOH B 23 172 172 HOH HOH . F 3 HOH B 24 173 173 HOH HOH . F 3 HOH B 25 174 52 HOH HOH . F 3 HOH B 26 175 175 HOH HOH . F 3 HOH B 27 176 53 HOH HOH . F 3 HOH B 28 177 62 HOH HOH . F 3 HOH B 29 178 70 HOH HOH . F 3 HOH B 30 179 72 HOH HOH . F 3 HOH B 31 180 180 HOH HOH . F 3 HOH B 32 181 181 HOH HOH . F 3 HOH B 33 182 73 HOH HOH . F 3 HOH B 34 183 183 HOH HOH . F 3 HOH B 35 184 81 HOH HOH . F 3 HOH B 36 185 185 HOH HOH . F 3 HOH B 37 186 186 HOH HOH . F 3 HOH B 38 187 83 HOH HOH . F 3 HOH B 39 188 88 HOH HOH . F 3 HOH B 40 189 90 HOH HOH . F 3 HOH B 41 190 94 HOH HOH . F 3 HOH B 42 191 191 HOH HOH . F 3 HOH B 43 192 95 HOH HOH . F 3 HOH B 44 193 98 HOH HOH . F 3 HOH B 45 194 107 HOH HOH . F 3 HOH B 46 195 195 HOH HOH . F 3 HOH B 47 196 196 HOH HOH . F 3 HOH B 48 197 110 HOH HOH . F 3 HOH B 49 198 117 HOH HOH . F 3 HOH B 50 199 119 HOH HOH . F 3 HOH B 51 200 200 HOH HOH . F 3 HOH B 52 201 120 HOH HOH . F 3 HOH B 53 202 202 HOH HOH . F 3 HOH B 54 203 203 HOH HOH . F 3 HOH B 55 204 204 HOH HOH . F 3 HOH B 56 205 205 HOH HOH . F 3 HOH B 57 206 122 HOH HOH . F 3 HOH B 58 207 125 HOH HOH . F 3 HOH B 59 208 128 HOH HOH . F 3 HOH B 60 209 131 HOH HOH . F 3 HOH B 61 210 132 HOH HOH . F 3 HOH B 62 211 211 HOH HOH . F 3 HOH B 63 212 212 HOH HOH . F 3 HOH B 64 213 133 HOH HOH . F 3 HOH B 65 215 135 HOH HOH . F 3 HOH B 66 216 138 HOH HOH . F 3 HOH B 67 217 217 HOH HOH . F 3 HOH B 68 218 218 HOH HOH . F 3 HOH B 69 219 140 HOH HOH . F 3 HOH B 70 220 143 HOH HOH . F 3 HOH B 71 221 145 HOH HOH . F 3 HOH B 72 222 222 HOH HOH . F 3 HOH B 73 223 146 HOH HOH . F 3 HOH B 74 224 224 HOH HOH . F 3 HOH B 75 225 147 HOH HOH . F 3 HOH B 76 226 108 HOH HOH . F 3 HOH B 77 227 154 HOH HOH . F 3 HOH B 78 228 157 HOH HOH . F 3 HOH B 79 229 229 HOH HOH . F 3 HOH B 80 230 161 HOH HOH . F 3 HOH B 81 231 162 HOH HOH . F 3 HOH B 82 232 163 HOH HOH . F 3 HOH B 83 233 148 HOH HOH . F 3 HOH B 84 234 234 HOH HOH . F 3 HOH B 85 235 235 HOH HOH . F 3 HOH B 86 236 236 HOH HOH . F 3 HOH B 87 238 238 HOH HOH . F 3 HOH B 88 242 242 HOH HOH . F 3 HOH B 89 245 245 HOH HOH . F 3 HOH B 90 249 249 HOH HOH . F 3 HOH B 91 259 259 HOH HOH . F 3 HOH B 92 266 266 HOH HOH . F 3 HOH B 93 271 271 HOH HOH . F 3 HOH B 94 276 276 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4BX . . . C 2 43.909 5.971 -3.408 1 33.32 ? C1 4BX 1 A 1 HETATM 2 C C2 4BX . . . C 2 44.78 6.186 -2.345 1 34.01 ? C2 4BX 1 A 1 HETATM 3 C C3 4BX . . . C 2 44.983 5.188 -1.399 1 31.67 ? C3 4BX 1 A 1 HETATM 4 C C4 4BX . . . C 2 43.241 4.758 -3.525 1 33.99 ? C4 4BX 1 A 1 HETATM 5 N N5 4BX . . . C 2 42.954 2.535 -2.44 1 34.39 ? N5 4BX 1 A 1 HETATM 6 C C6 4BX . . . C 2 43.446 3.762 -2.578 1 30.93 ? C6 4BX 1 A 1 HETATM 7 C C7 4BX . . . C 2 44.314 3.976 -1.519 1 32.25 ? C7 4BX 1 A 1 HETATM 8 N N8 4BX . . . C 2 44.314 2.871 -0.782 1 30.23 ? N8 4BX 1 A 1 HETATM 9 C C9 4BX . . . C 2 43.484 1.992 -1.344 1 32.18 ? C9 4BX 1 A 1 HETATM 10 C C10 4BX . . . C 2 43.188 0.586 -0.817 1 33.39 ? C10 4BX 1 A 1 HETATM 11 C C11 4BX . . . C 2 43.677 -0.481 -1.798 1 39.82 ? C11 4BX 1 A 1 HETATM 12 C C12 4BX . . . C 2 42.971 -1.816 -1.553 1 44.87 ? C12 4BX 1 A 1 HETATM 13 O O13 4BX . . . C 2 42.306 -2.342 -2.443 1 46.91 ? O13 4BX 1 A 1 HETATM 14 O O14 4BX . . . C 2 43.062 -2.377 -0.462 1 47.53 ? O14 4BX 1 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 14 #