data_3KAD # _model_server_result.job_id 7RKVgT0SsnoDc-3vYs_bww _model_server_result.datetime_utc '2024-12-03 17:58:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kad # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":165}' # _entry.id 3KAD # _exptl.entry_id 3KAD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 546.646 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DODECAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KAD _cell.length_a 68.211 _cell.length_b 68.211 _cell.length_c 79.55 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KAD _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H50 O13' _chem_comp.formula_weight 546.646 _chem_comp.id 12P _chem_comp.mon_nstd_flag . _chem_comp.name 'DODECAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O37 C36 12P sing 1 n n O37 H37 12P sing 2 n n C36 C35 12P sing 3 n n C36 H361 12P sing 4 n n C36 H362 12P sing 5 n n C35 O34 12P sing 6 n n C35 H351 12P sing 7 n n C35 H352 12P sing 8 n n O34 C33 12P sing 9 n n C33 C32 12P sing 10 n n C33 H331 12P sing 11 n n C33 H332 12P sing 12 n n C32 O31 12P sing 13 n n C32 H321 12P sing 14 n n C32 H322 12P sing 15 n n O31 C30 12P sing 16 n n C30 C29 12P sing 17 n n C30 H301 12P sing 18 n n C30 H302 12P sing 19 n n C29 O28 12P sing 20 n n C29 H291 12P sing 21 n n C29 H292 12P sing 22 n n O28 C27 12P sing 23 n n C27 C26 12P sing 24 n n C27 H271 12P sing 25 n n C27 H272 12P sing 26 n n C26 O25 12P sing 27 n n C26 H261 12P sing 28 n n C26 H262 12P sing 29 n n O25 C24 12P sing 30 n n C24 C23 12P sing 31 n n C24 H241 12P sing 32 n n C24 H242 12P sing 33 n n C23 O22 12P sing 34 n n C23 H231 12P sing 35 n n C23 H232 12P sing 36 n n O22 C21 12P sing 37 n n C21 C20 12P sing 38 n n C21 H211 12P sing 39 n n C21 H212 12P sing 40 n n C20 O19 12P sing 41 n n C20 H201 12P sing 42 n n C20 H202 12P sing 43 n n O19 C18 12P sing 44 n n C18 C17 12P sing 45 n n C18 H181 12P sing 46 n n C18 H182 12P sing 47 n n C17 O16 12P sing 48 n n C17 H171 12P sing 49 n n C17 H172 12P sing 50 n n O16 C15 12P sing 51 n n C15 C14 12P sing 52 n n C15 H151 12P sing 53 n n C15 H152 12P sing 54 n n C14 O13 12P sing 55 n n C14 H141 12P sing 56 n n C14 H142 12P sing 57 n n O13 C12 12P sing 58 n n C12 C11 12P sing 59 n n C12 H121 12P sing 60 n n C12 H122 12P sing 61 n n C11 O10 12P sing 62 n n C11 H111 12P sing 63 n n C11 H112 12P sing 64 n n O10 C9 12P sing 65 n n C9 C8 12P sing 66 n n C9 H91 12P sing 67 n n C9 H92 12P sing 68 n n C8 O7 12P sing 69 n n C8 H81 12P sing 70 n n C8 H82 12P sing 71 n n O7 C6 12P sing 72 n n C6 C5 12P sing 73 n n C6 H61 12P sing 74 n n C6 H62 12P sing 75 n n C5 O4 12P sing 76 n n C5 H51 12P sing 77 n n C5 H52 12P sing 78 n n O4 C3 12P sing 79 n n C3 C2 12P sing 80 n n C3 H31 12P sing 81 n n C3 H32 12P sing 82 n n C2 O1 12P sing 83 n n C2 H21 12P sing 84 n n C2 H22 12P sing 85 n n O1 HO1 12P sing 86 n n # _atom_sites.entry_id 3KAD _atom_sites.fract_transf_matrix[1][1] 0.01466 _atom_sites.fract_transf_matrix[1][2] 0.008464 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016928 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012571 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4C0 A 1 164 1 4C0 4C0 . C 3 12P A 1 165 1 12P 12P . D 4 HOH A 1 166 166 HOH HOH . D 4 HOH A 2 167 167 HOH HOH . D 4 HOH A 3 168 168 HOH HOH . D 4 HOH A 4 169 169 HOH HOH . D 4 HOH A 5 170 170 HOH HOH . D 4 HOH A 6 171 171 HOH HOH . D 4 HOH A 7 172 172 HOH HOH . D 4 HOH A 8 173 173 HOH HOH . D 4 HOH A 9 174 174 HOH HOH . D 4 HOH A 10 175 175 HOH HOH . D 4 HOH A 11 176 176 HOH HOH . D 4 HOH A 12 177 177 HOH HOH . D 4 HOH A 13 178 178 HOH HOH . D 4 HOH A 14 179 179 HOH HOH . D 4 HOH A 15 180 180 HOH HOH . D 4 HOH A 16 181 181 HOH HOH . D 4 HOH A 17 182 182 HOH HOH . D 4 HOH A 18 183 183 HOH HOH . D 4 HOH A 19 184 184 HOH HOH . D 4 HOH A 20 185 185 HOH HOH . D 4 HOH A 21 186 186 HOH HOH . D 4 HOH A 22 187 187 HOH HOH . D 4 HOH A 23 188 188 HOH HOH . D 4 HOH A 24 189 189 HOH HOH . D 4 HOH A 25 190 190 HOH HOH . D 4 HOH A 26 191 191 HOH HOH . D 4 HOH A 27 192 192 HOH HOH . D 4 HOH A 28 193 193 HOH HOH . D 4 HOH A 29 194 194 HOH HOH . D 4 HOH A 30 195 195 HOH HOH . D 4 HOH A 31 196 196 HOH HOH . D 4 HOH A 32 197 197 HOH HOH . D 4 HOH A 33 198 198 HOH HOH . D 4 HOH A 34 199 199 HOH HOH . D 4 HOH A 35 200 200 HOH HOH . D 4 HOH A 36 201 201 HOH HOH . D 4 HOH A 37 202 202 HOH HOH . D 4 HOH A 38 203 1 HOH HOH . D 4 HOH A 39 204 2 HOH HOH . D 4 HOH A 40 205 3 HOH HOH . D 4 HOH A 41 206 4 HOH HOH . D 4 HOH A 42 207 5 HOH HOH . D 4 HOH A 43 208 6 HOH HOH . D 4 HOH A 44 209 7 HOH HOH . D 4 HOH A 45 210 8 HOH HOH . D 4 HOH A 46 211 10 HOH HOH . D 4 HOH A 47 212 11 HOH HOH . D 4 HOH A 48 213 13 HOH HOH . D 4 HOH A 49 214 14 HOH HOH . D 4 HOH A 50 215 15 HOH HOH . D 4 HOH A 51 216 16 HOH HOH . D 4 HOH A 52 217 18 HOH HOH . D 4 HOH A 53 218 20 HOH HOH . D 4 HOH A 54 219 21 HOH HOH . D 4 HOH A 55 220 22 HOH HOH . D 4 HOH A 56 221 23 HOH HOH . D 4 HOH A 57 222 24 HOH HOH . D 4 HOH A 58 223 25 HOH HOH . D 4 HOH A 59 224 26 HOH HOH . D 4 HOH A 60 225 27 HOH HOH . D 4 HOH A 61 226 28 HOH HOH . D 4 HOH A 62 227 29 HOH HOH . D 4 HOH A 63 228 30 HOH HOH . D 4 HOH A 64 229 31 HOH HOH . D 4 HOH A 65 230 33 HOH HOH . D 4 HOH A 66 231 34 HOH HOH . D 4 HOH A 67 232 35 HOH HOH . D 4 HOH A 68 233 36 HOH HOH . D 4 HOH A 69 234 37 HOH HOH . D 4 HOH A 70 235 38 HOH HOH . D 4 HOH A 71 236 39 HOH HOH . D 4 HOH A 72 237 40 HOH HOH . D 4 HOH A 73 238 41 HOH HOH . D 4 HOH A 74 239 42 HOH HOH . D 4 HOH A 75 240 43 HOH HOH . D 4 HOH A 76 241 44 HOH HOH . D 4 HOH A 77 242 46 HOH HOH . D 4 HOH A 78 243 47 HOH HOH . D 4 HOH A 79 244 48 HOH HOH . D 4 HOH A 80 245 50 HOH HOH . D 4 HOH A 81 246 51 HOH HOH . D 4 HOH A 82 247 52 HOH HOH . D 4 HOH A 83 248 54 HOH HOH . D 4 HOH A 84 249 55 HOH HOH . D 4 HOH A 85 250 56 HOH HOH . D 4 HOH A 86 251 57 HOH HOH . D 4 HOH A 87 252 58 HOH HOH . D 4 HOH A 88 253 59 HOH HOH . D 4 HOH A 89 254 60 HOH HOH . D 4 HOH A 90 255 61 HOH HOH . D 4 HOH A 91 256 62 HOH HOH . D 4 HOH A 92 257 63 HOH HOH . D 4 HOH A 93 258 64 HOH HOH . D 4 HOH A 94 259 65 HOH HOH . D 4 HOH A 95 260 66 HOH HOH . D 4 HOH A 96 261 67 HOH HOH . D 4 HOH A 97 262 69 HOH HOH . D 4 HOH A 98 263 70 HOH HOH . D 4 HOH A 99 264 71 HOH HOH . D 4 HOH A 100 265 72 HOH HOH . D 4 HOH A 101 266 73 HOH HOH . D 4 HOH A 102 267 75 HOH HOH . D 4 HOH A 103 268 76 HOH HOH . D 4 HOH A 104 269 77 HOH HOH . D 4 HOH A 105 270 78 HOH HOH . D 4 HOH A 106 271 79 HOH HOH . D 4 HOH A 107 272 80 HOH HOH . D 4 HOH A 108 273 82 HOH HOH . D 4 HOH A 109 274 83 HOH HOH . D 4 HOH A 110 275 84 HOH HOH . D 4 HOH A 111 276 85 HOH HOH . D 4 HOH A 112 277 86 HOH HOH . D 4 HOH A 113 278 87 HOH HOH . D 4 HOH A 114 279 89 HOH HOH . D 4 HOH A 115 280 90 HOH HOH . D 4 HOH A 116 281 91 HOH HOH . D 4 HOH A 117 282 92 HOH HOH . D 4 HOH A 118 283 95 HOH HOH . D 4 HOH A 119 284 96 HOH HOH . D 4 HOH A 120 285 98 HOH HOH . D 4 HOH A 121 286 99 HOH HOH . D 4 HOH A 122 287 100 HOH HOH . D 4 HOH A 123 288 101 HOH HOH . D 4 HOH A 124 289 102 HOH HOH . D 4 HOH A 125 290 103 HOH HOH . D 4 HOH A 126 291 104 HOH HOH . D 4 HOH A 127 292 105 HOH HOH . D 4 HOH A 128 293 106 HOH HOH . D 4 HOH A 129 294 107 HOH HOH . D 4 HOH A 130 295 108 HOH HOH . D 4 HOH A 131 296 109 HOH HOH . D 4 HOH A 132 297 110 HOH HOH . D 4 HOH A 133 298 111 HOH HOH . D 4 HOH A 134 299 114 HOH HOH . D 4 HOH A 135 300 115 HOH HOH . D 4 HOH A 136 301 116 HOH HOH . D 4 HOH A 137 302 117 HOH HOH . D 4 HOH A 138 303 119 HOH HOH . D 4 HOH A 139 304 121 HOH HOH . D 4 HOH A 140 305 122 HOH HOH . D 4 HOH A 141 306 123 HOH HOH . D 4 HOH A 142 307 124 HOH HOH . D 4 HOH A 143 308 126 HOH HOH . D 4 HOH A 144 309 127 HOH HOH . D 4 HOH A 145 310 128 HOH HOH . D 4 HOH A 146 311 132 HOH HOH . D 4 HOH A 147 312 134 HOH HOH . D 4 HOH A 148 313 135 HOH HOH . D 4 HOH A 149 314 138 HOH HOH . D 4 HOH A 150 315 143 HOH HOH . D 4 HOH A 151 316 145 HOH HOH . D 4 HOH A 152 317 148 HOH HOH . D 4 HOH A 153 318 150 HOH HOH . D 4 HOH A 154 319 154 HOH HOH . D 4 HOH A 155 320 155 HOH HOH . D 4 HOH A 156 321 156 HOH HOH . D 4 HOH A 157 322 157 HOH HOH . D 4 HOH A 158 323 158 HOH HOH . D 4 HOH A 159 324 159 HOH HOH . D 4 HOH A 160 325 160 HOH HOH . D 4 HOH A 161 326 161 HOH HOH . D 4 HOH A 162 327 162 HOH HOH . D 4 HOH A 163 328 163 HOH HOH . D 4 HOH A 164 329 164 HOH HOH . D 4 HOH A 165 330 165 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O37 12P . . . C 3 49.439 -24.308 1.787 1 32.65 ? O37 12P 165 A 1 HETATM 2 C C36 12P . . . C 3 48.768 -23.184 2.385 1 30.84 ? C36 12P 165 A 1 HETATM 3 C C35 12P . . . C 3 47.31 -23.568 2.658 1 28.26 ? C35 12P 165 A 1 HETATM 4 O O34 12P . . . C 3 47.121 -24.455 3.822 1 21.13 ? O34 12P 165 A 1 HETATM 5 C C33 12P . . . C 3 45.742 -24.735 3.912 1 17.23 ? C33 12P 165 A 1 HETATM 6 C C32 12P . . . C 3 45.474 -25.471 5.174 1 19.5 ? C32 12P 165 A 1 HETATM 7 O O31 12P . . . C 3 46.141 -26.728 4.964 1 18.72 ? O31 12P 165 A 1 HETATM 8 C C30 12P . . . C 3 45.684 -27.61 6.01 1 21.38 ? C30 12P 165 A 1 HETATM 9 C C29 12P . . . C 3 46.242 -28.969 5.682 1 25.44 ? C29 12P 165 A 1 HETATM 10 O O28 12P . . . C 3 47.629 -28.757 5.468 1 27.68 ? O28 12P 165 A 1 HETATM 11 C C27 12P . . . C 3 48.099 -30.06 5.587 1 27.63 ? C27 12P 165 A 1 HETATM 12 C C26 12P . . . C 3 49.254 -29.839 4.723 1 28.61 ? C26 12P 165 A 1 HETATM 13 O O25 12P . . . C 3 50.376 -30.03 5.493 1 33.51 ? O25 12P 165 A 1 HETATM 14 C C24 12P . . . C 3 50.573 -29.011 6.382 1 21.23 ? C24 12P 165 A 1 HETATM 15 C C23 12P . . . C 3 52.049 -29.008 6.483 1 23.29 ? C23 12P 165 A 1 HETATM 16 O O22 12P . . . C 3 52.338 -28.136 7.624 1 32.19 ? O22 12P 165 A 1 HETATM 17 C C21 12P . . . C 3 52.028 -28.853 8.821 1 20.3 ? C21 12P 165 A 1 HETATM 18 C C20 12P . . . C 3 52.345 -28.135 10.129 1 26.77 ? C20 12P 165 A 1 HETATM 19 O O19 12P . . . C 3 51.333 -28.625 11.086 1 32.14 ? O19 12P 165 A 1 HETATM 20 C C18 12P . . . C 3 50.174 -27.799 11.165 1 30.13 ? C18 12P 165 A 1 HETATM 21 C C17 12P . . . C 3 49.104 -28.09 12.25 1 36.22 ? C17 12P 165 A 1 HETATM 22 O O16 12P . . . C 3 47.808 -27.67 11.71 1 41.02 ? O16 12P 165 A 1 HETATM 23 C C15 12P . . . C 3 47.022 -28.814 11.288 1 43.7 ? C15 12P 165 A 1 HETATM 24 C C14 12P . . . C 3 45.859 -28.621 10.288 1 46.35 ? C14 12P 165 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #