data_3KAG # _model_server_result.job_id nsavzQpST_jWB4iPRRkmKw _model_server_result.datetime_utc '2024-11-14 16:51:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kag # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":165}' # _entry.id 3KAG # _exptl.entry_id 3KAG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 546.646 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DODECAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KAG _cell.length_a 68.504 _cell.length_b 68.504 _cell.length_c 79.56 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H50 O13' _chem_comp.formula_weight 546.646 _chem_comp.id 12P _chem_comp.mon_nstd_flag . _chem_comp.name 'DODECAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O37 C36 12P sing 1 n n O37 H37 12P sing 2 n n C36 C35 12P sing 3 n n C36 H361 12P sing 4 n n C36 H362 12P sing 5 n n C35 O34 12P sing 6 n n C35 H351 12P sing 7 n n C35 H352 12P sing 8 n n O34 C33 12P sing 9 n n C33 C32 12P sing 10 n n C33 H331 12P sing 11 n n C33 H332 12P sing 12 n n C32 O31 12P sing 13 n n C32 H321 12P sing 14 n n C32 H322 12P sing 15 n n O31 C30 12P sing 16 n n C30 C29 12P sing 17 n n C30 H301 12P sing 18 n n C30 H302 12P sing 19 n n C29 O28 12P sing 20 n n C29 H291 12P sing 21 n n C29 H292 12P sing 22 n n O28 C27 12P sing 23 n n C27 C26 12P sing 24 n n C27 H271 12P sing 25 n n C27 H272 12P sing 26 n n C26 O25 12P sing 27 n n C26 H261 12P sing 28 n n C26 H262 12P sing 29 n n O25 C24 12P sing 30 n n C24 C23 12P sing 31 n n C24 H241 12P sing 32 n n C24 H242 12P sing 33 n n C23 O22 12P sing 34 n n C23 H231 12P sing 35 n n C23 H232 12P sing 36 n n O22 C21 12P sing 37 n n C21 C20 12P sing 38 n n C21 H211 12P sing 39 n n C21 H212 12P sing 40 n n C20 O19 12P sing 41 n n C20 H201 12P sing 42 n n C20 H202 12P sing 43 n n O19 C18 12P sing 44 n n C18 C17 12P sing 45 n n C18 H181 12P sing 46 n n C18 H182 12P sing 47 n n C17 O16 12P sing 48 n n C17 H171 12P sing 49 n n C17 H172 12P sing 50 n n O16 C15 12P sing 51 n n C15 C14 12P sing 52 n n C15 H151 12P sing 53 n n C15 H152 12P sing 54 n n C14 O13 12P sing 55 n n C14 H141 12P sing 56 n n C14 H142 12P sing 57 n n O13 C12 12P sing 58 n n C12 C11 12P sing 59 n n C12 H121 12P sing 60 n n C12 H122 12P sing 61 n n C11 O10 12P sing 62 n n C11 H111 12P sing 63 n n C11 H112 12P sing 64 n n O10 C9 12P sing 65 n n C9 C8 12P sing 66 n n C9 H91 12P sing 67 n n C9 H92 12P sing 68 n n C8 O7 12P sing 69 n n C8 H81 12P sing 70 n n C8 H82 12P sing 71 n n O7 C6 12P sing 72 n n C6 C5 12P sing 73 n n C6 H61 12P sing 74 n n C6 H62 12P sing 75 n n C5 O4 12P sing 76 n n C5 H51 12P sing 77 n n C5 H52 12P sing 78 n n O4 C3 12P sing 79 n n C3 C2 12P sing 80 n n C3 H31 12P sing 81 n n C3 H32 12P sing 82 n n C2 O1 12P sing 83 n n C2 H21 12P sing 84 n n C2 H22 12P sing 85 n n O1 HO1 12P sing 86 n n # _atom_sites.entry_id 3KAG _atom_sites.fract_transf_matrix[1][1] 0.014598 _atom_sites.fract_transf_matrix[1][2] 0.008428 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016856 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012569 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4D7 A 1 164 1 4D7 4D7 . C 3 12P A 1 165 1 12P 12P . D 4 HOH A 1 166 1 HOH HOH . D 4 HOH A 2 167 2 HOH HOH . D 4 HOH A 3 168 3 HOH HOH . D 4 HOH A 4 169 4 HOH HOH . D 4 HOH A 5 170 5 HOH HOH . D 4 HOH A 6 171 171 HOH HOH . D 4 HOH A 7 172 6 HOH HOH . D 4 HOH A 8 173 173 HOH HOH . D 4 HOH A 9 174 8 HOH HOH . D 4 HOH A 10 175 9 HOH HOH . D 4 HOH A 11 176 11 HOH HOH . D 4 HOH A 12 177 12 HOH HOH . D 4 HOH A 13 178 13 HOH HOH . D 4 HOH A 14 179 179 HOH HOH . D 4 HOH A 15 180 180 HOH HOH . D 4 HOH A 16 181 15 HOH HOH . D 4 HOH A 17 182 182 HOH HOH . D 4 HOH A 18 183 183 HOH HOH . D 4 HOH A 19 184 184 HOH HOH . D 4 HOH A 20 185 16 HOH HOH . D 4 HOH A 21 186 186 HOH HOH . D 4 HOH A 22 187 187 HOH HOH . D 4 HOH A 23 188 188 HOH HOH . D 4 HOH A 24 189 189 HOH HOH . D 4 HOH A 25 190 190 HOH HOH . D 4 HOH A 26 191 17 HOH HOH . D 4 HOH A 27 192 192 HOH HOH . D 4 HOH A 28 193 193 HOH HOH . D 4 HOH A 29 194 194 HOH HOH . D 4 HOH A 30 195 195 HOH HOH . D 4 HOH A 31 196 196 HOH HOH . D 4 HOH A 32 197 18 HOH HOH . D 4 HOH A 33 198 198 HOH HOH . D 4 HOH A 34 199 199 HOH HOH . D 4 HOH A 35 200 200 HOH HOH . D 4 HOH A 36 201 201 HOH HOH . D 4 HOH A 37 202 202 HOH HOH . D 4 HOH A 38 203 203 HOH HOH . D 4 HOH A 39 204 204 HOH HOH . D 4 HOH A 40 205 205 HOH HOH . D 4 HOH A 41 206 206 HOH HOH . D 4 HOH A 42 207 207 HOH HOH . D 4 HOH A 43 208 208 HOH HOH . D 4 HOH A 44 209 209 HOH HOH . D 4 HOH A 45 210 210 HOH HOH . D 4 HOH A 46 211 211 HOH HOH . D 4 HOH A 47 212 212 HOH HOH . D 4 HOH A 48 213 213 HOH HOH . D 4 HOH A 49 214 214 HOH HOH . D 4 HOH A 50 215 215 HOH HOH . D 4 HOH A 51 216 216 HOH HOH . D 4 HOH A 52 217 217 HOH HOH . D 4 HOH A 53 218 218 HOH HOH . D 4 HOH A 54 219 19 HOH HOH . D 4 HOH A 55 220 220 HOH HOH . D 4 HOH A 56 221 221 HOH HOH . D 4 HOH A 57 222 222 HOH HOH . D 4 HOH A 58 223 20 HOH HOH . D 4 HOH A 59 224 21 HOH HOH . D 4 HOH A 60 225 22 HOH HOH . D 4 HOH A 61 226 23 HOH HOH . D 4 HOH A 62 227 25 HOH HOH . D 4 HOH A 63 228 27 HOH HOH . D 4 HOH A 64 229 28 HOH HOH . D 4 HOH A 65 230 29 HOH HOH . D 4 HOH A 66 231 31 HOH HOH . D 4 HOH A 67 232 32 HOH HOH . D 4 HOH A 68 233 34 HOH HOH . D 4 HOH A 69 234 36 HOH HOH . D 4 HOH A 70 235 37 HOH HOH . D 4 HOH A 71 236 38 HOH HOH . D 4 HOH A 72 237 39 HOH HOH . D 4 HOH A 73 238 40 HOH HOH . D 4 HOH A 74 239 41 HOH HOH . D 4 HOH A 75 240 42 HOH HOH . D 4 HOH A 76 241 44 HOH HOH . D 4 HOH A 77 242 48 HOH HOH . D 4 HOH A 78 243 49 HOH HOH . D 4 HOH A 79 244 51 HOH HOH . D 4 HOH A 80 245 52 HOH HOH . D 4 HOH A 81 246 53 HOH HOH . D 4 HOH A 82 247 54 HOH HOH . D 4 HOH A 83 248 56 HOH HOH . D 4 HOH A 84 249 57 HOH HOH . D 4 HOH A 85 250 58 HOH HOH . D 4 HOH A 86 251 61 HOH HOH . D 4 HOH A 87 252 63 HOH HOH . D 4 HOH A 88 253 64 HOH HOH . D 4 HOH A 89 254 66 HOH HOH . D 4 HOH A 90 255 70 HOH HOH . D 4 HOH A 91 256 71 HOH HOH . D 4 HOH A 92 257 74 HOH HOH . D 4 HOH A 93 258 75 HOH HOH . D 4 HOH A 94 259 76 HOH HOH . D 4 HOH A 95 260 82 HOH HOH . D 4 HOH A 96 261 87 HOH HOH . D 4 HOH A 97 262 88 HOH HOH . D 4 HOH A 98 263 90 HOH HOH . D 4 HOH A 99 264 95 HOH HOH . D 4 HOH A 100 265 97 HOH HOH . D 4 HOH A 101 266 99 HOH HOH . D 4 HOH A 102 267 100 HOH HOH . D 4 HOH A 103 268 101 HOH HOH . D 4 HOH A 104 269 103 HOH HOH . D 4 HOH A 105 270 105 HOH HOH . D 4 HOH A 106 271 108 HOH HOH . D 4 HOH A 107 272 109 HOH HOH . D 4 HOH A 108 273 111 HOH HOH . D 4 HOH A 109 274 114 HOH HOH . D 4 HOH A 110 275 117 HOH HOH . D 4 HOH A 111 276 118 HOH HOH . D 4 HOH A 112 277 123 HOH HOH . D 4 HOH A 113 278 124 HOH HOH . D 4 HOH A 114 279 125 HOH HOH . D 4 HOH A 115 280 135 HOH HOH . D 4 HOH A 116 281 137 HOH HOH . D 4 HOH A 117 282 141 HOH HOH . D 4 HOH A 118 283 148 HOH HOH . D 4 HOH A 119 284 151 HOH HOH . D 4 HOH A 120 285 159 HOH HOH . D 4 HOH A 121 286 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O37 12P . . . C 3 -29.42 5.116 28.477 1 42.64 ? O37 12P 165 A 1 HETATM 2 C C36 12P . . . C 3 -30.479 6.077 28.443 1 35.84 ? C36 12P 165 A 1 HETATM 3 C C35 12P . . . C 3 -31.449 5.455 29.404 1 37.77 ? C35 12P 165 A 1 HETATM 4 O O34 12P . . . C 3 -31.888 6.253 30.465 1 30 ? O34 12P 165 A 1 HETATM 5 C C33 12P . . . C 3 -33.075 7.03 30.283 1 29.22 ? C33 12P 165 A 1 HETATM 6 C C32 12P . . . C 3 -33.716 6.868 31.655 1 23.34 ? C32 12P 165 A 1 HETATM 7 O O31 12P . . . C 3 -34.487 5.672 31.587 1 28.29 ? O31 12P 165 A 1 HETATM 8 C C30 12P . . . C 3 -35.352 5.465 32.716 1 29.92 ? C30 12P 165 A 1 HETATM 9 C C29 12P . . . C 3 -36.205 4.222 32.422 1 33.99 ? C29 12P 165 A 1 HETATM 10 O O28 12P . . . C 3 -35.414 3.204 31.821 1 35.22 ? O28 12P 165 A 1 HETATM 11 C C27 12P . . . C 3 -36.162 1.997 31.795 1 34.55 ? C27 12P 165 A 1 HETATM 12 C C26 12P . . . C 3 -35.242 0.832 31.522 1 37.35 ? C26 12P 165 A 1 HETATM 13 O O25 12P . . . C 3 -34.494 0.65 32.714 1 38.57 ? O25 12P 165 A 1 HETATM 14 C C24 12P . . . C 3 -33.614 -0.465 32.644 1 37.15 ? C24 12P 165 A 1 HETATM 15 C C23 12P . . . C 3 -32.377 -0.11 33.456 1 39.53 ? C23 12P 165 A 1 HETATM 16 O O22 12P . . . C 3 -32.325 -0.69 34.769 1 41.47 ? O22 12P 165 A 1 HETATM 17 C C21 12P . . . C 3 -33.409 -0.348 35.568 1 39.51 ? C21 12P 165 A 1 HETATM 18 C C20 12P . . . C 3 -32.794 -0.046 36.899 1 39.69 ? C20 12P 165 A 1 HETATM 19 O O19 12P . . . C 3 -33.766 0.649 37.669 1 43.25 ? O19 12P 165 A 1 HETATM 20 C C18 12P . . . C 3 -33.394 1.97 38.084 1 47.94 ? C18 12P 165 A 1 HETATM 21 C C17 12P . . . C 3 -34.488 2.716 38.863 1 50.18 ? C17 12P 165 A 1 HETATM 22 O O16 12P . . . C 3 -35.061 3.711 38.011 1 51.08 ? O16 12P 165 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 22 #