data_3KAK # _model_server_result.job_id Lp_UCfmrXKFDJgAct8SmZw _model_server_result.datetime_utc '2024-11-28 06:38:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 3KAK # _exptl.entry_id 3KAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 250.272 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GAMMA-GLUTAMYLCYSTEINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.96 _cell.angle_gamma 90 _cell.entry_id 3KAK _cell.length_a 64.88 _cell.length_b 80.95 _cell.length_c 89.12 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C8 H14 N2 O5 S' _chem_comp.formula_weight 250.272 _chem_comp.id 3GC _chem_comp.mon_nstd_flag . _chem_comp.name GAMMA-GLUTAMYLCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 3GC sing 1 n n N1 H11 3GC sing 2 n n N1 H22 3GC sing 3 n n CA1 C1 3GC sing 4 n n CA1 CB1 3GC sing 5 n n CA1 HA1 3GC sing 6 n n C1 O11 3GC doub 7 n n C1 O12 3GC sing 8 n n O12 H12 3GC sing 9 n n CB1 CG1 3GC sing 10 n n CB1 HB11 3GC sing 11 n n CB1 HB12 3GC sing 12 n n CG1 CD1 3GC sing 13 n n CG1 HG11 3GC sing 14 n n CG1 HG12 3GC sing 15 n n CD1 OE1 3GC doub 16 n n CD1 N2 3GC sing 17 n n N2 CA2 3GC sing 18 n n N2 H2 3GC sing 19 n n CA2 C2 3GC sing 20 n n CA2 CB2 3GC sing 21 n n CA2 HA2 3GC sing 22 n n C2 O2 3GC doub 23 n n C2 O3 3GC sing 24 n n CB2 SG2 3GC sing 25 n n CB2 HB21 3GC sing 26 n n CB2 HB22 3GC sing 27 n n SG2 HG2 3GC sing 28 n n O3 H3 3GC sing 29 n n # _atom_sites.entry_id 3KAK _atom_sites.fract_transf_matrix[1][1] 0.015413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001609 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012353 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011282 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3GC A 1 501 501 3GC 3GC . D 2 3GC B 1 501 501 3GC 3GC . E 2 3GC B 1 502 502 3GC 3GC . F 3 HOH A 1 500 500 HOH HOH . F 3 HOH A 2 502 502 HOH HOH . F 3 HOH A 3 503 503 HOH HOH . F 3 HOH A 4 504 504 HOH HOH . F 3 HOH A 5 505 505 HOH HOH . F 3 HOH A 6 506 506 HOH HOH . F 3 HOH A 7 507 507 HOH HOH . F 3 HOH A 8 508 508 HOH HOH . F 3 HOH A 9 509 509 HOH HOH . F 3 HOH A 10 510 510 HOH HOH . F 3 HOH A 11 511 511 HOH HOH . F 3 HOH A 12 512 512 HOH HOH . F 3 HOH A 13 513 513 HOH HOH . F 3 HOH A 14 514 514 HOH HOH . F 3 HOH A 15 515 515 HOH HOH . F 3 HOH A 16 516 516 HOH HOH . F 3 HOH A 17 517 517 HOH HOH . F 3 HOH A 18 518 518 HOH HOH . F 3 HOH A 19 519 519 HOH HOH . F 3 HOH A 20 520 520 HOH HOH . F 3 HOH A 21 521 521 HOH HOH . F 3 HOH A 22 522 522 HOH HOH . F 3 HOH A 23 523 523 HOH HOH . F 3 HOH A 24 524 524 HOH HOH . F 3 HOH A 25 525 525 HOH HOH . F 3 HOH A 26 526 526 HOH HOH . F 3 HOH A 27 527 527 HOH HOH . F 3 HOH A 28 528 528 HOH HOH . F 3 HOH A 29 529 529 HOH HOH . F 3 HOH A 30 530 530 HOH HOH . F 3 HOH A 31 531 531 HOH HOH . F 3 HOH A 32 532 532 HOH HOH . F 3 HOH A 33 533 533 HOH HOH . F 3 HOH A 34 534 534 HOH HOH . F 3 HOH A 35 535 535 HOH HOH . F 3 HOH A 36 536 536 HOH HOH . F 3 HOH A 37 537 537 HOH HOH . F 3 HOH A 38 538 538 HOH HOH . F 3 HOH A 39 539 539 HOH HOH . F 3 HOH A 40 540 540 HOH HOH . F 3 HOH A 41 541 541 HOH HOH . F 3 HOH A 42 542 542 HOH HOH . F 3 HOH A 43 543 543 HOH HOH . F 3 HOH A 44 544 544 HOH HOH . F 3 HOH A 45 545 545 HOH HOH . F 3 HOH A 46 546 546 HOH HOH . F 3 HOH A 47 547 547 HOH HOH . F 3 HOH A 48 548 548 HOH HOH . F 3 HOH A 49 549 549 HOH HOH . F 3 HOH A 50 550 550 HOH HOH . F 3 HOH A 51 551 551 HOH HOH . F 3 HOH A 52 552 552 HOH HOH . F 3 HOH A 53 553 553 HOH HOH . F 3 HOH A 54 554 554 HOH HOH . F 3 HOH A 55 555 555 HOH HOH . F 3 HOH A 56 556 556 HOH HOH . F 3 HOH A 57 557 557 HOH HOH . F 3 HOH A 58 558 558 HOH HOH . F 3 HOH A 59 560 560 HOH HOH . F 3 HOH A 60 561 561 HOH HOH . F 3 HOH A 61 562 562 HOH HOH . F 3 HOH A 62 563 563 HOH HOH . F 3 HOH A 63 564 564 HOH HOH . F 3 HOH A 64 565 565 HOH HOH . F 3 HOH A 65 566 566 HOH HOH . F 3 HOH A 66 567 567 HOH HOH . F 3 HOH A 67 568 568 HOH HOH . F 3 HOH A 68 569 569 HOH HOH . F 3 HOH A 69 570 570 HOH HOH . F 3 HOH A 70 571 571 HOH HOH . F 3 HOH A 71 572 572 HOH HOH . F 3 HOH A 72 573 573 HOH HOH . F 3 HOH A 73 574 574 HOH HOH . F 3 HOH A 74 575 575 HOH HOH . F 3 HOH A 75 576 576 HOH HOH . F 3 HOH A 76 577 577 HOH HOH . F 3 HOH A 77 578 578 HOH HOH . F 3 HOH A 78 579 579 HOH HOH . F 3 HOH A 79 580 580 HOH HOH . F 3 HOH A 80 581 581 HOH HOH . F 3 HOH A 81 582 582 HOH HOH . F 3 HOH A 82 583 583 HOH HOH . F 3 HOH A 83 584 584 HOH HOH . F 3 HOH A 84 585 585 HOH HOH . F 3 HOH A 85 586 586 HOH HOH . F 3 HOH A 86 587 587 HOH HOH . F 3 HOH A 87 588 588 HOH HOH . F 3 HOH A 88 590 590 HOH HOH . F 3 HOH A 89 591 591 HOH HOH . F 3 HOH A 90 592 592 HOH HOH . F 3 HOH A 91 593 593 HOH HOH . F 3 HOH A 92 594 594 HOH HOH . F 3 HOH A 93 595 595 HOH HOH . F 3 HOH A 94 596 596 HOH HOH . F 3 HOH A 95 597 597 HOH HOH . F 3 HOH A 96 598 598 HOH HOH . F 3 HOH A 97 599 599 HOH HOH . F 3 HOH A 98 600 600 HOH HOH . F 3 HOH A 99 601 601 HOH HOH . F 3 HOH A 100 602 602 HOH HOH . F 3 HOH A 101 603 603 HOH HOH . F 3 HOH A 102 604 604 HOH HOH . F 3 HOH A 103 605 605 HOH HOH . F 3 HOH A 104 606 606 HOH HOH . F 3 HOH A 105 607 607 HOH HOH . F 3 HOH A 106 608 608 HOH HOH . F 3 HOH A 107 609 609 HOH HOH . F 3 HOH A 108 610 610 HOH HOH . F 3 HOH A 109 611 611 HOH HOH . F 3 HOH A 110 612 612 HOH HOH . F 3 HOH A 111 613 613 HOH HOH . F 3 HOH A 112 614 614 HOH HOH . F 3 HOH A 113 615 615 HOH HOH . F 3 HOH A 114 616 616 HOH HOH . F 3 HOH A 115 617 617 HOH HOH . F 3 HOH A 116 618 618 HOH HOH . F 3 HOH A 117 619 619 HOH HOH . F 3 HOH A 118 620 620 HOH HOH . F 3 HOH A 119 621 621 HOH HOH . F 3 HOH A 120 622 622 HOH HOH . F 3 HOH A 121 623 623 HOH HOH . F 3 HOH A 122 625 625 HOH HOH . F 3 HOH A 123 626 626 HOH HOH . F 3 HOH A 124 627 627 HOH HOH . F 3 HOH A 125 628 628 HOH HOH . F 3 HOH A 126 629 629 HOH HOH . F 3 HOH A 127 630 630 HOH HOH . F 3 HOH A 128 632 632 HOH HOH . F 3 HOH A 129 633 633 HOH HOH . F 3 HOH A 130 634 634 HOH HOH . G 3 HOH B 1 500 500 HOH HOH . G 3 HOH B 2 503 503 HOH HOH . G 3 HOH B 3 504 504 HOH HOH . G 3 HOH B 4 505 505 HOH HOH . G 3 HOH B 5 506 506 HOH HOH . G 3 HOH B 6 507 507 HOH HOH . G 3 HOH B 7 508 508 HOH HOH . G 3 HOH B 8 509 509 HOH HOH . G 3 HOH B 9 510 510 HOH HOH . G 3 HOH B 10 511 511 HOH HOH . G 3 HOH B 11 512 512 HOH HOH . G 3 HOH B 12 513 513 HOH HOH . G 3 HOH B 13 514 514 HOH HOH . G 3 HOH B 14 515 515 HOH HOH . G 3 HOH B 15 516 516 HOH HOH . G 3 HOH B 16 517 517 HOH HOH . G 3 HOH B 17 518 518 HOH HOH . G 3 HOH B 18 519 519 HOH HOH . G 3 HOH B 19 520 520 HOH HOH . G 3 HOH B 20 521 521 HOH HOH . G 3 HOH B 21 522 522 HOH HOH . G 3 HOH B 22 523 523 HOH HOH . G 3 HOH B 23 524 524 HOH HOH . G 3 HOH B 24 525 525 HOH HOH . G 3 HOH B 25 526 526 HOH HOH . G 3 HOH B 26 527 527 HOH HOH . G 3 HOH B 27 528 528 HOH HOH . G 3 HOH B 28 529 529 HOH HOH . G 3 HOH B 29 530 530 HOH HOH . G 3 HOH B 30 531 531 HOH HOH . G 3 HOH B 31 532 532 HOH HOH . G 3 HOH B 32 533 533 HOH HOH . G 3 HOH B 33 534 534 HOH HOH . G 3 HOH B 34 535 535 HOH HOH . G 3 HOH B 35 536 536 HOH HOH . G 3 HOH B 36 537 537 HOH HOH . G 3 HOH B 37 538 538 HOH HOH . G 3 HOH B 38 539 539 HOH HOH . G 3 HOH B 39 540 540 HOH HOH . G 3 HOH B 40 541 541 HOH HOH . G 3 HOH B 41 542 542 HOH HOH . G 3 HOH B 42 543 543 HOH HOH . G 3 HOH B 43 544 544 HOH HOH . G 3 HOH B 44 545 545 HOH HOH . G 3 HOH B 45 546 546 HOH HOH . G 3 HOH B 46 547 547 HOH HOH . G 3 HOH B 47 548 548 HOH HOH . G 3 HOH B 48 549 549 HOH HOH . G 3 HOH B 49 550 550 HOH HOH . G 3 HOH B 50 551 551 HOH HOH . G 3 HOH B 51 552 552 HOH HOH . G 3 HOH B 52 553 553 HOH HOH . G 3 HOH B 53 554 554 HOH HOH . G 3 HOH B 54 555 555 HOH HOH . G 3 HOH B 55 556 556 HOH HOH . G 3 HOH B 56 557 557 HOH HOH . G 3 HOH B 57 558 558 HOH HOH . G 3 HOH B 58 559 559 HOH HOH . G 3 HOH B 59 560 560 HOH HOH . G 3 HOH B 60 561 561 HOH HOH . G 3 HOH B 61 562 562 HOH HOH . G 3 HOH B 62 563 563 HOH HOH . G 3 HOH B 63 564 564 HOH HOH . G 3 HOH B 64 565 565 HOH HOH . G 3 HOH B 65 566 566 HOH HOH . G 3 HOH B 66 567 567 HOH HOH . G 3 HOH B 67 568 568 HOH HOH . G 3 HOH B 68 569 569 HOH HOH . G 3 HOH B 69 570 570 HOH HOH . G 3 HOH B 70 571 571 HOH HOH . G 3 HOH B 71 572 572 HOH HOH . G 3 HOH B 72 573 573 HOH HOH . G 3 HOH B 73 574 574 HOH HOH . G 3 HOH B 74 575 575 HOH HOH . G 3 HOH B 75 576 576 HOH HOH . G 3 HOH B 76 577 577 HOH HOH . G 3 HOH B 77 578 578 HOH HOH . G 3 HOH B 78 579 579 HOH HOH . G 3 HOH B 79 580 580 HOH HOH . G 3 HOH B 80 581 581 HOH HOH . G 3 HOH B 81 582 582 HOH HOH . G 3 HOH B 82 583 583 HOH HOH . G 3 HOH B 83 584 584 HOH HOH . G 3 HOH B 84 585 585 HOH HOH . G 3 HOH B 85 586 586 HOH HOH . G 3 HOH B 86 587 587 HOH HOH . G 3 HOH B 87 588 588 HOH HOH . G 3 HOH B 88 589 589 HOH HOH . G 3 HOH B 89 591 591 HOH HOH . G 3 HOH B 90 592 592 HOH HOH . G 3 HOH B 91 593 593 HOH HOH . G 3 HOH B 92 594 594 HOH HOH . G 3 HOH B 93 595 595 HOH HOH . G 3 HOH B 94 596 596 HOH HOH . G 3 HOH B 95 597 597 HOH HOH . G 3 HOH B 96 598 598 HOH HOH . G 3 HOH B 97 599 599 HOH HOH . G 3 HOH B 98 600 600 HOH HOH . G 3 HOH B 99 601 601 HOH HOH . G 3 HOH B 100 602 602 HOH HOH . G 3 HOH B 101 603 603 HOH HOH . G 3 HOH B 102 604 604 HOH HOH . G 3 HOH B 103 605 605 HOH HOH . G 3 HOH B 104 606 606 HOH HOH . G 3 HOH B 105 607 607 HOH HOH . G 3 HOH B 106 608 608 HOH HOH . G 3 HOH B 107 609 609 HOH HOH . G 3 HOH B 108 610 610 HOH HOH . G 3 HOH B 109 611 611 HOH HOH . G 3 HOH B 110 612 612 HOH HOH . G 3 HOH B 111 613 613 HOH HOH . G 3 HOH B 112 614 614 HOH HOH . G 3 HOH B 113 615 615 HOH HOH . G 3 HOH B 114 617 617 HOH HOH . G 3 HOH B 115 618 618 HOH HOH . G 3 HOH B 116 619 619 HOH HOH . G 3 HOH B 117 620 620 HOH HOH . G 3 HOH B 118 621 621 HOH HOH . G 3 HOH B 119 622 622 HOH HOH . G 3 HOH B 120 623 623 HOH HOH . G 3 HOH B 121 624 624 HOH HOH . G 3 HOH B 122 625 625 HOH HOH . G 3 HOH B 123 626 626 HOH HOH . G 3 HOH B 124 627 627 HOH HOH . G 3 HOH B 125 628 628 HOH HOH . G 3 HOH B 126 629 629 HOH HOH . G 3 HOH B 127 630 630 HOH HOH . G 3 HOH B 128 631 631 HOH HOH . G 3 HOH B 129 632 632 HOH HOH . G 3 HOH B 130 633 633 HOH HOH . G 3 HOH B 131 634 634 HOH HOH . G 3 HOH B 132 635 635 HOH HOH . G 3 HOH B 133 636 636 HOH HOH . G 3 HOH B 134 637 637 HOH HOH . G 3 HOH B 135 639 639 HOH HOH . G 3 HOH B 136 640 640 HOH HOH . G 3 HOH B 137 641 641 HOH HOH . G 3 HOH B 138 642 642 HOH HOH . G 3 HOH B 139 643 643 HOH HOH . G 3 HOH B 140 644 644 HOH HOH . G 3 HOH B 141 645 645 HOH HOH . G 3 HOH B 142 646 646 HOH HOH . G 3 HOH B 143 647 647 HOH HOH . G 3 HOH B 144 648 648 HOH HOH . G 3 HOH B 145 649 649 HOH HOH . G 3 HOH B 146 650 650 HOH HOH . G 3 HOH B 147 651 651 HOH HOH . G 3 HOH B 148 652 652 HOH HOH . G 3 HOH B 149 653 653 HOH HOH . G 3 HOH B 150 656 656 HOH HOH . G 3 HOH B 151 657 657 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 3GC . . . E 2 18.018 7.986 75.545 0.5 20.49 ? N1 3GC 502 B 1 HETATM 2 C CA1 3GC . . . E 2 19.145 8.735 75.061 0.5 22.51 ? CA1 3GC 502 B 1 HETATM 3 C C1 3GC . . . E 2 18.417 9.967 74.711 0.5 24.66 ? C1 3GC 502 B 1 HETATM 4 O O11 3GC . . . E 2 19.007 10.934 74.19 0.5 23.71 ? O11 3GC 502 B 1 HETATM 5 O O12 3GC . . . E 2 17.196 9.87 74.945 0.5 21.97 ? O12 3GC 502 B 1 HETATM 6 C CB1 3GC . . . E 2 20.24 8.916 76.096 0.5 22.5 ? CB1 3GC 502 B 1 HETATM 7 C CG1 3GC . . . E 2 21.501 8.016 76.027 0.5 18.88 ? CG1 3GC 502 B 1 HETATM 8 C CD1 3GC . . . E 2 21.895 8.03 77.487 0.5 17.7 ? CD1 3GC 502 B 1 HETATM 9 O OE1 3GC . . . E 2 23.153 8.025 78.064 0.5 13.78 ? OE1 3GC 502 B 1 HETATM 10 N N2 3GC . . . E 2 20.777 8.076 78.042 0.5 19.67 ? N2 3GC 502 B 1 HETATM 11 C CA2 3GC . . . E 2 20.38 8.15 79.433 0.5 19.97 ? CA2 3GC 502 B 1 HETATM 12 C C2 3GC . . . E 2 18.994 8.698 79.382 0.5 21.82 ? C2 3GC 502 B 1 HETATM 13 O O2 3GC . . . E 2 18.432 8.679 78.28 0.5 22.52 ? O2 3GC 502 B 1 HETATM 14 C CB2 3GC . . . E 2 21.436 9.027 80.074 0.5 17.18 ? CB2 3GC 502 B 1 HETATM 15 S SG2 3GC . . . E 2 22.751 7.902 80.518 0.5 18.17 ? SG2 3GC 502 B 1 HETATM 16 O O3 3GC . . . E 2 18.386 9.149 80.496 0.5 24.96 ? O3 3GC 502 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 16 #