data_3KAR
#
_model_server_result.job_id            lL-NGZrI34jAu0-v0rJkVw 
_model_server_result.datetime_utc      '2024-10-22 08:44:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kar 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":999}' 
#
_entry.id    3KAR 
#
_exptl.entry_id    3KAR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.78 
_cell.angle_gamma         90 
_cell.entry_id            3KAR 
_cell.length_a            44.129 
_cell.length_b            81.209 
_cell.length_c            48.298 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KAR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 98 A THR 481 1_555 B MG MG . A MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc2 D O HOH . A HOH 815 1_555 B MG MG . A MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc3 D O HOH . A HOH 816 1_555 B MG MG . A MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc4 D O HOH . A HOH 827 1_555 B MG MG . A MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc5 D O HOH . A HOH 849 1_555 B MG MG . A MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? 
metalc ? metalc6 B MG MG . A MG 997 1_555 C O2B ADP . A ADP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     3KAR 
_atom_sites.fract_transf_matrix[1][1]    0.022661 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006404 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012314 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021516 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 997 997 MG MG . 
C 3 ADP A 1 999 999 ADP ADP . 
D 4 HOH A 1 801 801 HOH HOH . 
D 4 HOH A 2 802 802 HOH HOH . 
D 4 HOH A 3 803 803 HOH HOH . 
D 4 HOH A 4 804 804 HOH HOH . 
D 4 HOH A 5 805 805 HOH HOH . 
D 4 HOH A 6 806 806 HOH HOH . 
D 4 HOH A 7 807 807 HOH HOH . 
D 4 HOH A 8 808 808 HOH HOH . 
D 4 HOH A 9 809 809 HOH HOH . 
D 4 HOH A 10 810 810 HOH HOH . 
D 4 HOH A 11 811 811 HOH HOH . 
D 4 HOH A 12 812 812 HOH HOH . 
D 4 HOH A 13 813 813 HOH HOH . 
D 4 HOH A 14 814 814 HOH HOH . 
D 4 HOH A 15 815 815 HOH HOH . 
D 4 HOH A 16 816 816 HOH HOH . 
D 4 HOH A 17 817 817 HOH HOH . 
D 4 HOH A 18 818 818 HOH HOH . 
D 4 HOH A 19 819 819 HOH HOH . 
D 4 HOH A 20 820 820 HOH HOH . 
D 4 HOH A 21 821 821 HOH HOH . 
D 4 HOH A 22 822 822 HOH HOH . 
D 4 HOH A 23 823 823 HOH HOH . 
D 4 HOH A 24 824 824 HOH HOH . 
D 4 HOH A 25 825 825 HOH HOH . 
D 4 HOH A 26 826 826 HOH HOH . 
D 4 HOH A 27 827 827 HOH HOH . 
D 4 HOH A 28 828 828 HOH HOH . 
D 4 HOH A 29 830 830 HOH HOH . 
D 4 HOH A 30 831 831 HOH HOH . 
D 4 HOH A 31 832 832 HOH HOH . 
D 4 HOH A 32 833 833 HOH HOH . 
D 4 HOH A 33 834 834 HOH HOH . 
D 4 HOH A 34 835 835 HOH HOH . 
D 4 HOH A 35 836 836 HOH HOH . 
D 4 HOH A 36 837 837 HOH HOH . 
D 4 HOH A 37 838 838 HOH HOH . 
D 4 HOH A 38 839 839 HOH HOH . 
D 4 HOH A 39 840 840 HOH HOH . 
D 4 HOH A 40 841 841 HOH HOH . 
D 4 HOH A 41 842 842 HOH HOH . 
D 4 HOH A 42 843 843 HOH HOH . 
D 4 HOH A 43 844 844 HOH HOH . 
D 4 HOH A 44 845 845 HOH HOH . 
D 4 HOH A 45 846 846 HOH HOH . 
D 4 HOH A 46 847 847 HOH HOH . 
D 4 HOH A 47 848 848 HOH HOH . 
D 4 HOH A 48 849 849 HOH HOH . 
D 4 HOH A 49 850 850 HOH HOH . 
D 4 HOH A 50 851 851 HOH HOH . 
D 4 HOH A 51 852 852 HOH HOH . 
D 4 HOH A 52 853 853 HOH HOH . 
D 4 HOH A 53 854 854 HOH HOH . 
D 4 HOH A 54 855 855 HOH HOH . 
D 4 HOH A 55 856 856 HOH HOH . 
D 4 HOH A 56 857 857 HOH HOH . 
D 4 HOH A 57 858 858 HOH HOH . 
D 4 HOH A 58 859 859 HOH HOH . 
D 4 HOH A 59 860 860 HOH HOH . 
D 4 HOH A 60 861 861 HOH HOH . 
D 4 HOH A 61 862 862 HOH HOH . 
D 4 HOH A 62 863 863 HOH HOH . 
D 4 HOH A 63 864 864 HOH HOH . 
D 4 HOH A 64 865 865 HOH HOH . 
D 4 HOH A 65 866 866 HOH HOH . 
D 4 HOH A 66 867 867 HOH HOH . 
D 4 HOH A 67 868 868 HOH HOH . 
D 4 HOH A 68 869 869 HOH HOH . 
D 4 HOH A 69 870 870 HOH HOH . 
D 4 HOH A 70 871 871 HOH HOH . 
D 4 HOH A 71 872 872 HOH HOH . 
D 4 HOH A 72 873 873 HOH HOH . 
D 4 HOH A 73 874 874 HOH HOH . 
D 4 HOH A 74 875 875 HOH HOH . 
D 4 HOH A 75 876 876 HOH HOH . 
D 4 HOH A 76 877 877 HOH HOH . 
D 4 HOH A 77 878 878 HOH HOH . 
D 4 HOH A 78 879 879 HOH HOH . 
D 4 HOH A 79 880 880 HOH HOH . 
D 4 HOH A 80 881 881 HOH HOH . 
D 4 HOH A 81 882 882 HOH HOH . 
D 4 HOH A 82 883 883 HOH HOH . 
D 4 HOH A 83 884 884 HOH HOH . 
D 4 HOH A 84 885 885 HOH HOH . 
D 4 HOH A 85 886 886 HOH HOH . 
D 4 HOH A 86 887 887 HOH HOH . 
D 4 HOH A 87 888 888 HOH HOH . 
D 4 HOH A 88 889 889 HOH HOH . 
D 4 HOH A 89 890 890 HOH HOH . 
D 4 HOH A 90 891 891 HOH HOH . 
D 4 HOH A 91 892 892 HOH HOH . 
D 4 HOH A 92 893 893 HOH HOH . 
D 4 HOH A 93 894 894 HOH HOH . 
D 4 HOH A 94 895 895 HOH HOH . 
D 4 HOH A 95 896 896 HOH HOH . 
D 4 HOH A 96 897 897 HOH HOH . 
D 4 HOH A 97 898 898 HOH HOH . 
D 4 HOH A 98 899 899 HOH HOH . 
D 4 HOH A 99 900 900 HOH HOH . 
D 4 HOH A 100 901 901 HOH HOH . 
D 4 HOH A 101 902 902 HOH HOH . 
D 4 HOH A 102 903 903 HOH HOH . 
D 4 HOH A 103 904 904 HOH HOH . 
D 4 HOH A 104 905 905 HOH HOH . 
D 4 HOH A 105 906 906 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 3 -8.409 9.561 9.104 1 20.38 ? PB ADP 999 A 1 
HETATM 2 O O1B ADP . . . C 3 -8.438 8.228 8.358 1 16.3 ? O1B ADP 999 A 1 
HETATM 3 O O2B ADP . . . C 3 -7.739 9.376 10.439 1 46.35 ? O2B ADP 999 A 1 
HETATM 4 O O3B ADP . . . C 3 -7.705 10.697 8.26 1 15.85 ? O3B ADP 999 A 1 
HETATM 5 P PA ADP . . . C 3 -10.597 10.357 10.645 1 22.75 ? PA ADP 999 A 1 
HETATM 6 O O1A ADP . . . C 3 -10.374 9.361 11.736 1 25.64 ? O1A ADP 999 A 1 
HETATM 7 O O2A ADP . . . C 3 -9.999 11.637 11.091 1 20.25 ? O2A ADP 999 A 1 
HETATM 8 O O3A ADP . . . C 3 -9.876 9.963 9.332 1 26.25 ? O3A ADP 999 A 1 
HETATM 9 O O5' ADP . . . C 3 -12.167 10.423 10.338 1 39.65 ? O5' ADP 999 A 1 
HETATM 10 C C5' ADP . . . C 3 -12.614 11.303 9.294 1 27.19 ? C5' ADP 999 A 1 
HETATM 11 C C4' ADP . . . C 3 -14.002 11.815 9.67 1 19.02 ? C4' ADP 999 A 1 
HETATM 12 O O4' ADP . . . C 3 -14.924 10.684 9.639 1 24.62 ? O4' ADP 999 A 1 
HETATM 13 C C3' ADP . . . C 3 -14.114 12.419 11.075 1 22.82 ? C3' ADP 999 A 1 
HETATM 14 O O3' ADP . . . C 3 -14.885 13.64 11.12 1 56.71 ? O3' ADP 999 A 1 
HETATM 15 C C2' ADP . . . C 3 -14.718 11.263 11.862 1 34.06 ? C2' ADP 999 A 1 
HETATM 16 O O2' ADP . . . C 3 -15.467 11.776 12.953 1 38.21 ? O2' ADP 999 A 1 
HETATM 17 C C1' ADP . . . C 3 -15.6 10.539 10.848 1 13.82 ? C1' ADP 999 A 1 
HETATM 18 N N9 ADP . . . C 3 -15.618 9.102 11.081 1 13.19 ? N9 ADP 999 A 1 
HETATM 19 C C8 ADP . . . C 3 -14.626 8.222 10.832 1 7.43 ? C8 ADP 999 A 1 
HETATM 20 N N7 ADP . . . C 3 -14.988 6.96 11.026 1 20.22 ? N7 ADP 999 A 1 
HETATM 21 C C5 ADP . . . C 3 -16.256 7.066 11.581 1 22.48 ? C5 ADP 999 A 1 
HETATM 22 C C6 ADP . . . C 3 -17.116 6.069 12.045 1 32.33 ? C6 ADP 999 A 1 
HETATM 23 N N6 ADP . . . C 3 -16.879 4.838 12.084 1 44.06 ? N6 ADP 999 A 1 
HETATM 24 N N1 ADP . . . C 3 -18.288 6.62 12.43 1 22.17 ? N1 ADP 999 A 1 
HETATM 25 C C2 ADP . . . C 3 -18.607 7.933 12.463 1 25.96 ? C2 ADP 999 A 1 
HETATM 26 N N3 ADP . . . C 3 -17.831 8.861 12.031 1 37.98 ? N3 ADP 999 A 1 
HETATM 27 C C4 ADP . . . C 3 -16.668 8.364 11.585 1 2.38 ? C4 ADP 999 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           27 
#