data_3KB3
#
_model_server_result.job_id            GLatbwDylUbccev4nCLQ0w 
_model_server_result.datetime_utc      '2025-06-18 17:24:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kb3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":997}' 
#
_entry.id    3KB3 
#
_exptl.entry_id    3KB3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3KB3 
_cell.length_a            60.319 
_cell.length_b            67.466 
_cell.length_c            143.905 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KB3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 H O HOH . B HOH 33 1_555 D MG MG . B MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? 
metalc ? metalc2 H O HOH . B HOH 120 1_555 D MG MG . B MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? 
metalc ? metalc3 B OD1 ASP 19 B ASP 204 1_555 E MG MG . B MG 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? 
metalc ? metalc4 B OD2 ASP 58 B ASP 243 1_555 D MG MG . B MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? 
metalc ? metalc5 B OD1 ASP 58 B ASP 243 1_555 E MG MG . B MG 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? 
metalc ? metalc6 B OD2 ASP 58 B ASP 243 1_555 F MG MG . B MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? 
metalc ? metalc7 B O GLY 59 B GLY 244 1_555 E MG MG . B MG 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? 
metalc ? metalc8 B OG SER 162 B SER 347 1_555 F MG MG . B MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? 
metalc ? metalc9 B OD1 ASP 247 B ASP 432 1_555 D MG MG . B MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
metalc ? metalc10 B OD1 ASN 308 B ASN 493 1_555 E MG MG . B MG 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3KB3 
_atom_sites.fract_transf_matrix[1][1]    0.016579 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014822 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006949 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 A8S A 1 189 100 A8S A8S . 
D 4 MG B 1 997 997 MG MG . 
E 4 MG B 1 998 998 MG MG . 
F 4 MG B 1 999 999 MG MG . 
G 5 HOH A 1 1 1 HOH HOH . 
G 5 HOH A 2 2 2 HOH HOH . 
G 5 HOH A 3 3 3 HOH HOH . 
G 5 HOH A 4 5 5 HOH HOH . 
G 5 HOH A 5 6 6 HOH HOH . 
G 5 HOH A 6 7 7 HOH HOH . 
G 5 HOH A 7 8 8 HOH HOH . 
G 5 HOH A 8 10 10 HOH HOH . 
G 5 HOH A 9 11 11 HOH HOH . 
G 5 HOH A 10 190 190 HOH HOH . 
G 5 HOH A 11 191 191 HOH HOH . 
G 5 HOH A 12 192 13 HOH HOH . 
G 5 HOH A 13 193 193 HOH HOH . 
G 5 HOH A 14 194 14 HOH HOH . 
G 5 HOH A 15 195 15 HOH HOH . 
G 5 HOH A 16 196 17 HOH HOH . 
G 5 HOH A 17 197 197 HOH HOH . 
G 5 HOH A 18 198 18 HOH HOH . 
G 5 HOH A 19 199 19 HOH HOH . 
G 5 HOH A 20 200 200 HOH HOH . 
G 5 HOH A 21 201 201 HOH HOH . 
G 5 HOH A 22 202 202 HOH HOH . 
G 5 HOH A 23 203 20 HOH HOH . 
G 5 HOH A 24 204 21 HOH HOH . 
G 5 HOH A 25 205 24 HOH HOH . 
G 5 HOH A 26 206 26 HOH HOH . 
G 5 HOH A 27 207 207 HOH HOH . 
G 5 HOH A 28 208 27 HOH HOH . 
G 5 HOH A 29 209 30 HOH HOH . 
G 5 HOH A 30 210 210 HOH HOH . 
G 5 HOH A 31 211 32 HOH HOH . 
G 5 HOH A 32 212 212 HOH HOH . 
G 5 HOH A 33 213 38 HOH HOH . 
G 5 HOH A 34 214 40 HOH HOH . 
G 5 HOH A 35 215 41 HOH HOH . 
G 5 HOH A 36 216 216 HOH HOH . 
G 5 HOH A 37 217 42 HOH HOH . 
G 5 HOH A 38 218 43 HOH HOH . 
G 5 HOH A 39 219 219 HOH HOH . 
G 5 HOH A 40 220 220 HOH HOH . 
G 5 HOH A 41 221 47 HOH HOH . 
G 5 HOH A 42 222 222 HOH HOH . 
G 5 HOH A 43 223 223 HOH HOH . 
G 5 HOH A 44 224 49 HOH HOH . 
G 5 HOH A 45 225 225 HOH HOH . 
G 5 HOH A 46 226 52 HOH HOH . 
G 5 HOH A 47 227 227 HOH HOH . 
G 5 HOH A 48 228 53 HOH HOH . 
G 5 HOH A 49 229 54 HOH HOH . 
G 5 HOH A 50 230 56 HOH HOH . 
G 5 HOH A 51 231 57 HOH HOH . 
G 5 HOH A 52 232 58 HOH HOH . 
G 5 HOH A 53 233 61 HOH HOH . 
G 5 HOH A 54 234 62 HOH HOH . 
G 5 HOH A 55 235 64 HOH HOH . 
G 5 HOH A 56 236 65 HOH HOH . 
G 5 HOH A 57 237 70 HOH HOH . 
G 5 HOH A 58 238 71 HOH HOH . 
G 5 HOH A 59 239 74 HOH HOH . 
G 5 HOH A 60 240 75 HOH HOH . 
G 5 HOH A 61 241 78 HOH HOH . 
G 5 HOH A 62 242 81 HOH HOH . 
G 5 HOH A 63 243 83 HOH HOH . 
G 5 HOH A 64 244 85 HOH HOH . 
G 5 HOH A 65 245 87 HOH HOH . 
G 5 HOH A 66 246 88 HOH HOH . 
G 5 HOH A 67 247 90 HOH HOH . 
G 5 HOH A 68 248 92 HOH HOH . 
G 5 HOH A 69 249 94 HOH HOH . 
G 5 HOH A 70 250 97 HOH HOH . 
G 5 HOH A 71 251 99 HOH HOH . 
G 5 HOH A 72 252 100 HOH HOH . 
G 5 HOH A 73 253 102 HOH HOH . 
G 5 HOH A 74 254 104 HOH HOH . 
G 5 HOH A 75 255 107 HOH HOH . 
G 5 HOH A 76 256 108 HOH HOH . 
G 5 HOH A 77 257 110 HOH HOH . 
G 5 HOH A 78 258 111 HOH HOH . 
G 5 HOH A 79 259 113 HOH HOH . 
G 5 HOH A 80 260 116 HOH HOH . 
G 5 HOH A 81 261 117 HOH HOH . 
G 5 HOH A 82 262 119 HOH HOH . 
G 5 HOH A 83 263 121 HOH HOH . 
G 5 HOH A 84 264 124 HOH HOH . 
G 5 HOH A 85 265 127 HOH HOH . 
G 5 HOH A 86 266 129 HOH HOH . 
G 5 HOH A 87 267 130 HOH HOH . 
G 5 HOH A 88 268 131 HOH HOH . 
G 5 HOH A 89 269 132 HOH HOH . 
G 5 HOH A 90 270 134 HOH HOH . 
G 5 HOH A 91 271 135 HOH HOH . 
G 5 HOH A 92 272 136 HOH HOH . 
G 5 HOH A 93 273 139 HOH HOH . 
G 5 HOH A 94 274 142 HOH HOH . 
G 5 HOH A 95 275 146 HOH HOH . 
G 5 HOH A 96 276 147 HOH HOH . 
G 5 HOH A 97 277 148 HOH HOH . 
G 5 HOH A 98 278 150 HOH HOH . 
G 5 HOH A 99 279 154 HOH HOH . 
G 5 HOH A 100 280 155 HOH HOH . 
G 5 HOH A 101 281 156 HOH HOH . 
G 5 HOH A 102 282 159 HOH HOH . 
G 5 HOH A 103 283 161 HOH HOH . 
G 5 HOH A 104 284 162 HOH HOH . 
G 5 HOH A 105 285 164 HOH HOH . 
G 5 HOH A 106 286 165 HOH HOH . 
G 5 HOH A 107 287 166 HOH HOH . 
G 5 HOH A 108 288 168 HOH HOH . 
G 5 HOH A 109 289 169 HOH HOH . 
G 5 HOH A 110 290 170 HOH HOH . 
G 5 HOH A 111 291 171 HOH HOH . 
G 5 HOH A 112 292 173 HOH HOH . 
G 5 HOH A 113 293 174 HOH HOH . 
G 5 HOH A 114 294 178 HOH HOH . 
G 5 HOH A 115 295 179 HOH HOH . 
G 5 HOH A 116 296 183 HOH HOH . 
G 5 HOH A 117 297 185 HOH HOH . 
G 5 HOH A 118 298 188 HOH HOH . 
H 5 HOH B 1 4 4 HOH HOH . 
H 5 HOH B 2 9 9 HOH HOH . 
H 5 HOH B 3 12 12 HOH HOH . 
H 5 HOH B 4 16 16 HOH HOH . 
H 5 HOH B 5 22 22 HOH HOH . 
H 5 HOH B 6 23 23 HOH HOH . 
H 5 HOH B 7 25 25 HOH HOH . 
H 5 HOH B 8 28 28 HOH HOH . 
H 5 HOH B 9 29 29 HOH HOH . 
H 5 HOH B 10 31 31 HOH HOH . 
H 5 HOH B 11 33 33 HOH HOH . 
H 5 HOH B 12 34 34 HOH HOH . 
H 5 HOH B 13 35 35 HOH HOH . 
H 5 HOH B 14 36 36 HOH HOH . 
H 5 HOH B 15 37 37 HOH HOH . 
H 5 HOH B 16 39 39 HOH HOH . 
H 5 HOH B 17 44 44 HOH HOH . 
H 5 HOH B 18 45 45 HOH HOH . 
H 5 HOH B 19 46 46 HOH HOH . 
H 5 HOH B 20 48 48 HOH HOH . 
H 5 HOH B 21 50 50 HOH HOH . 
H 5 HOH B 22 51 51 HOH HOH . 
H 5 HOH B 23 55 55 HOH HOH . 
H 5 HOH B 24 59 59 HOH HOH . 
H 5 HOH B 25 60 60 HOH HOH . 
H 5 HOH B 26 63 63 HOH HOH . 
H 5 HOH B 27 66 66 HOH HOH . 
H 5 HOH B 28 67 67 HOH HOH . 
H 5 HOH B 29 68 68 HOH HOH . 
H 5 HOH B 30 69 69 HOH HOH . 
H 5 HOH B 31 72 72 HOH HOH . 
H 5 HOH B 32 73 73 HOH HOH . 
H 5 HOH B 33 76 76 HOH HOH . 
H 5 HOH B 34 77 77 HOH HOH . 
H 5 HOH B 35 79 79 HOH HOH . 
H 5 HOH B 36 80 80 HOH HOH . 
H 5 HOH B 37 82 82 HOH HOH . 
H 5 HOH B 38 84 84 HOH HOH . 
H 5 HOH B 39 86 86 HOH HOH . 
H 5 HOH B 40 89 89 HOH HOH . 
H 5 HOH B 41 91 91 HOH HOH . 
H 5 HOH B 42 93 93 HOH HOH . 
H 5 HOH B 43 95 95 HOH HOH . 
H 5 HOH B 44 96 96 HOH HOH . 
H 5 HOH B 45 98 98 HOH HOH . 
H 5 HOH B 46 101 101 HOH HOH . 
H 5 HOH B 47 103 103 HOH HOH . 
H 5 HOH B 48 105 105 HOH HOH . 
H 5 HOH B 49 106 106 HOH HOH . 
H 5 HOH B 50 109 109 HOH HOH . 
H 5 HOH B 51 112 112 HOH HOH . 
H 5 HOH B 52 114 114 HOH HOH . 
H 5 HOH B 53 115 115 HOH HOH . 
H 5 HOH B 54 118 118 HOH HOH . 
H 5 HOH B 55 120 120 HOH HOH . 
H 5 HOH B 56 122 122 HOH HOH . 
H 5 HOH B 57 123 123 HOH HOH . 
H 5 HOH B 58 125 125 HOH HOH . 
H 5 HOH B 59 126 126 HOH HOH . 
H 5 HOH B 60 128 128 HOH HOH . 
H 5 HOH B 61 133 133 HOH HOH . 
H 5 HOH B 62 137 137 HOH HOH . 
H 5 HOH B 63 138 138 HOH HOH . 
H 5 HOH B 64 140 140 HOH HOH . 
H 5 HOH B 65 141 141 HOH HOH . 
H 5 HOH B 66 143 143 HOH HOH . 
H 5 HOH B 67 144 144 HOH HOH . 
H 5 HOH B 68 145 145 HOH HOH . 
H 5 HOH B 69 149 149 HOH HOH . 
H 5 HOH B 70 151 151 HOH HOH . 
H 5 HOH B 71 152 152 HOH HOH . 
H 5 HOH B 72 153 153 HOH HOH . 
H 5 HOH B 73 157 157 HOH HOH . 
H 5 HOH B 74 158 158 HOH HOH . 
H 5 HOH B 75 160 160 HOH HOH . 
H 5 HOH B 76 163 163 HOH HOH . 
H 5 HOH B 77 167 167 HOH HOH . 
H 5 HOH B 78 172 172 HOH HOH . 
H 5 HOH B 79 175 175 HOH HOH . 
H 5 HOH B 80 176 176 HOH HOH . 
H 5 HOH B 81 177 177 HOH HOH . 
H 5 HOH B 82 180 180 HOH HOH . 
H 5 HOH B 83 181 181 HOH HOH . 
H 5 HOH B 84 182 182 HOH HOH . 
H 5 HOH B 85 184 184 HOH HOH . 
H 5 HOH B 86 507 186 HOH HOH . 
H 5 HOH B 87 508 187 HOH HOH . 
H 5 HOH B 88 509 189 HOH HOH . 
H 5 HOH B 89 510 192 HOH HOH . 
H 5 HOH B 90 511 194 HOH HOH . 
H 5 HOH B 91 512 195 HOH HOH . 
H 5 HOH B 92 513 196 HOH HOH . 
H 5 HOH B 93 514 198 HOH HOH . 
H 5 HOH B 94 515 199 HOH HOH . 
H 5 HOH B 95 516 203 HOH HOH . 
H 5 HOH B 96 517 204 HOH HOH . 
H 5 HOH B 97 518 205 HOH HOH . 
H 5 HOH B 98 519 206 HOH HOH . 
H 5 HOH B 99 520 208 HOH HOH . 
H 5 HOH B 100 521 209 HOH HOH . 
H 5 HOH B 101 522 211 HOH HOH . 
H 5 HOH B 102 523 213 HOH HOH . 
H 5 HOH B 103 524 214 HOH HOH . 
H 5 HOH B 104 525 215 HOH HOH . 
H 5 HOH B 105 526 217 HOH HOH . 
H 5 HOH B 106 527 218 HOH HOH . 
H 5 HOH B 107 528 221 HOH HOH . 
H 5 HOH B 108 529 224 HOH HOH . 
H 5 HOH B 109 530 226 HOH HOH . 
H 5 HOH B 110 531 228 HOH HOH . 
H 5 HOH B 111 532 229 HOH HOH . 
H 5 HOH B 112 533 230 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               17.711 
_atom_site.Cartn_y               -19.994 
_atom_site.Cartn_z               -33.093 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        47.72 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           997 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#