data_3KB7
#
_model_server_result.job_id            dXUpEU3JM3qDl-A0wVuaIQ 
_model_server_result.datetime_utc      '2024-11-23 11:56:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kb7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1}' 
#
_entry.id    3KB7 
#
_exptl.entry_id    3KB7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              448.521 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            8-{[2-methoxy-5-(4-methylpiperazin-1-yl)phenyl]amino}-1-methyl-4,5-dihydro-1H-pyrazolo[4,3-h]quinazoline-3-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3KB7 
_cell.length_a            67.352 
_cell.length_b            67.352 
_cell.length_c            154.109 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KB7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_645 y+1,x-1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 101.028 -58.328543 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PRO 289 A PRO 323 1_555 A N NMM 290 A NMM 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale2 A C NMM 290 A NMM 324 1_555 A N PHE 291 A PHE 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? 
metalc ? metalc1 A NE2 HIS 59 A HIS 93 1_555 C ZN ZN . A ZN 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
metalc ? metalc2 A SG CYS 178 A CYS 212 1_555 C ZN ZN . A ZN 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc3 C ZN ZN . A ZN 346 1_555 D O1 TLA . A TLA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? 
#
_chem_comp.formula           'C23 H28 N8 O2' 
_chem_comp.formula_weight    448.521 
_chem_comp.id                071 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              8-{[2-methoxy-5-(4-methylpiperazin-1-yl)phenyl]amino}-1-methyl-4,5-dihydro-1H-pyrazolo[4,3-h]quinazoline-3-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 071 doub 1 n y 
N1 C4 071 sing 2 n y 
C2 N3 071 sing 3 n y 
C2 N18 071 sing 4 n n 
N3 C6 071 doub 5 n y 
C4 C5 071 doub 6 n y 
C5 C6 071 sing 7 n y 
C5 C8 071 sing 8 n n 
C6 C10 071 sing 9 n y 
C7 C8 071 sing 10 n n 
C7 C9 071 sing 11 n n 
C9 C10 071 doub 12 n y 
C9 C13 071 sing 13 n y 
C10 N11 071 sing 14 n y 
N11 N12 071 sing 15 n y 
N11 C17 071 sing 16 n n 
N12 C13 071 doub 17 n y 
C13 C14 071 sing 18 n n 
C14 N15 071 sing 19 n n 
C14 O16 071 doub 20 n n 
N18 C19 071 sing 21 n n 
C19 C20 071 sing 22 n y 
C19 C24 071 doub 23 n y 
C20 C21 071 doub 24 n y 
C21 C22 071 sing 25 n y 
C21 N30 071 sing 26 n n 
C22 C23 071 doub 27 n y 
C23 C24 071 sing 28 n y 
C24 O25 071 sing 29 n n 
O25 C26 071 sing 30 n n 
N30 C31 071 sing 31 n n 
N30 C35 071 sing 32 n n 
C31 C32 071 sing 33 n n 
C32 N33 071 sing 34 n n 
N33 C34 071 sing 35 n n 
N33 C36 071 sing 36 n n 
C34 C35 071 sing 37 n n 
C4 H4 071 sing 38 n n 
C7 H7 071 sing 39 n n 
C7 H7A 071 sing 40 n n 
C8 H8 071 sing 41 n n 
C8 H8A 071 sing 42 n n 
N15 HN15 071 sing 43 n n 
N15 HN1A 071 sing 44 n n 
C17 H17 071 sing 45 n n 
C17 H17A 071 sing 46 n n 
C17 H17B 071 sing 47 n n 
N18 HN18 071 sing 48 n n 
C20 H20 071 sing 49 n n 
C22 H22 071 sing 50 n n 
C23 H23 071 sing 51 n n 
C26 H26 071 sing 52 n n 
C26 H26A 071 sing 53 n n 
C26 H26B 071 sing 54 n n 
C31 H31 071 sing 55 n n 
C31 H31A 071 sing 56 n n 
C32 H32 071 sing 57 n n 
C32 H32A 071 sing 58 n n 
C34 H34 071 sing 59 n n 
C34 H34A 071 sing 60 n n 
C35 H35 071 sing 61 n n 
C35 H35A 071 sing 62 n n 
C36 H36 071 sing 63 n n 
C36 H36A 071 sing 64 n n 
C36 H36B 071 sing 65 n n 
#
_atom_sites.entry_id                     3KB7 
_atom_sites.fract_transf_matrix[1][1]    0.014847 
_atom_sites.fract_transf_matrix[1][2]    0.008572 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017144 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006489 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 071 A 1 1 1 071 071 . 
C 3 ZN A 1 346 346 ZN ZN . 
D 4 TLA A 1 400 400 TLA TLA . 
E 5 HOH A 1 2 2 HOH HOH . 
E 5 HOH A 2 3 3 HOH HOH . 
E 5 HOH A 3 4 4 HOH HOH . 
E 5 HOH A 4 5 5 HOH HOH . 
E 5 HOH A 5 6 6 HOH HOH . 
E 5 HOH A 6 7 7 HOH HOH . 
E 5 HOH A 7 8 8 HOH HOH . 
E 5 HOH A 8 9 9 HOH HOH . 
E 5 HOH A 9 10 10 HOH HOH . 
E 5 HOH A 10 11 11 HOH HOH . 
E 5 HOH A 11 12 12 HOH HOH . 
E 5 HOH A 12 13 13 HOH HOH . 
E 5 HOH A 13 14 14 HOH HOH . 
E 5 HOH A 14 15 15 HOH HOH . 
E 5 HOH A 15 16 16 HOH HOH . 
E 5 HOH A 16 17 17 HOH HOH . 
E 5 HOH A 17 18 18 HOH HOH . 
E 5 HOH A 18 19 19 HOH HOH . 
E 5 HOH A 19 20 20 HOH HOH . 
E 5 HOH A 20 21 21 HOH HOH . 
E 5 HOH A 21 22 22 HOH HOH . 
E 5 HOH A 22 23 23 HOH HOH . 
E 5 HOH A 23 24 24 HOH HOH . 
E 5 HOH A 24 25 25 HOH HOH . 
E 5 HOH A 25 26 26 HOH HOH . 
E 5 HOH A 26 27 27 HOH HOH . 
E 5 HOH A 27 28 28 HOH HOH . 
E 5 HOH A 28 29 29 HOH HOH . 
E 5 HOH A 29 30 30 HOH HOH . 
E 5 HOH A 30 31 31 HOH HOH . 
E 5 HOH A 31 32 32 HOH HOH . 
E 5 HOH A 32 33 33 HOH HOH . 
E 5 HOH A 33 34 34 HOH HOH . 
E 5 HOH A 34 347 347 HOH HOH . 
E 5 HOH A 35 348 348 HOH HOH . 
E 5 HOH A 36 349 349 HOH HOH . 
E 5 HOH A 37 350 350 HOH HOH . 
E 5 HOH A 38 351 351 HOH HOH . 
E 5 HOH A 39 352 352 HOH HOH . 
E 5 HOH A 40 353 353 HOH HOH . 
E 5 HOH A 41 354 354 HOH HOH . 
E 5 HOH A 42 355 355 HOH HOH . 
E 5 HOH A 43 356 356 HOH HOH . 
E 5 HOH A 44 357 357 HOH HOH . 
E 5 HOH A 45 358 358 HOH HOH . 
E 5 HOH A 46 359 359 HOH HOH . 
E 5 HOH A 47 360 360 HOH HOH . 
E 5 HOH A 48 361 361 HOH HOH . 
E 5 HOH A 49 362 362 HOH HOH . 
E 5 HOH A 50 363 363 HOH HOH . 
E 5 HOH A 51 364 364 HOH HOH . 
E 5 HOH A 52 365 365 HOH HOH . 
E 5 HOH A 53 366 366 HOH HOH . 
E 5 HOH A 54 367 367 HOH HOH . 
E 5 HOH A 55 368 368 HOH HOH . 
E 5 HOH A 56 369 369 HOH HOH . 
E 5 HOH A 57 370 370 HOH HOH . 
E 5 HOH A 58 371 371 HOH HOH . 
E 5 HOH A 59 372 372 HOH HOH . 
E 5 HOH A 60 373 373 HOH HOH . 
E 5 HOH A 61 374 374 HOH HOH . 
E 5 HOH A 62 375 375 HOH HOH . 
E 5 HOH A 63 376 376 HOH HOH . 
E 5 HOH A 64 377 377 HOH HOH . 
E 5 HOH A 65 378 378 HOH HOH . 
E 5 HOH A 66 379 379 HOH HOH . 
E 5 HOH A 67 380 380 HOH HOH . 
E 5 HOH A 68 381 381 HOH HOH . 
E 5 HOH A 69 382 382 HOH HOH . 
E 5 HOH A 70 383 383 HOH HOH . 
E 5 HOH A 71 384 384 HOH HOH . 
E 5 HOH A 72 385 385 HOH HOH . 
E 5 HOH A 73 386 386 HOH HOH . 
E 5 HOH A 74 387 387 HOH HOH . 
E 5 HOH A 75 388 388 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 071 . . . B 2 42.337 -12.394 17.689 1 17.97 ? N1 071 1 A 1 
HETATM 2 C C2 071 . . . B 2 43.617 -12.82 17.563 1 18.47 ? C2 071 1 A 1 
HETATM 3 N N3 071 . . . B 2 44.004 -13.442 16.416 1 18.76 ? N3 071 1 A 1 
HETATM 4 C C4 071 . . . B 2 41.451 -12.62 16.696 1 19.56 ? C4 071 1 A 1 
HETATM 5 C C5 071 . . . B 2 41.84 -13.262 15.505 1 18.46 ? C5 071 1 A 1 
HETATM 6 C C6 071 . . . B 2 43.162 -13.628 15.364 1 17.43 ? C6 071 1 A 1 
HETATM 7 C C7 071 . . . B 2 41.101 -15.01 13.967 1 16.45 ? C7 071 1 A 1 
HETATM 8 C C8 071 . . . B 2 40.866 -13.551 14.37 1 17.44 ? C8 071 1 A 1 
HETATM 9 C C9 071 . . . B 2 42.528 -14.978 13.406 1 17.34 ? C9 071 1 A 1 
HETATM 10 C C10 071 . . . B 2 43.63 -14.455 14.227 1 16.39 ? C10 071 1 A 1 
HETATM 11 N N11 071 . . . B 2 44.825 -14.922 13.877 1 14.73 ? N11 071 1 A 1 
HETATM 12 N N12 071 . . . B 2 44.661 -15.816 12.782 1 15.86 ? N12 071 1 A 1 
HETATM 13 C C13 071 . . . B 2 43.319 -15.915 12.57 1 16.32 ? C13 071 1 A 1 
HETATM 14 C C14 071 . . . B 2 42.618 -16.706 11.501 1 16.98 ? C14 071 1 A 1 
HETATM 15 N N15 071 . . . B 2 43.244 -17.791 11.053 1 13.98 ? N15 071 1 A 1 
HETATM 16 O O16 071 . . . B 2 41.508 -16.419 11.07 1 19.93 ? O16 071 1 A 1 
HETATM 17 C C17 071 . . . B 2 46.221 -14.691 14.318 1 13.64 ? C17 071 1 A 1 
HETATM 18 N N18 071 . . . B 2 44.507 -12.62 18.58 1 17.3 ? N18 071 1 A 1 
HETATM 19 C C19 071 . . . B 2 45.792 -13.098 18.574 1 16.81 ? C19 071 1 A 1 
HETATM 20 C C20 071 . . . B 2 46.172 -14.302 17.981 1 15.1 ? C20 071 1 A 1 
HETATM 21 C C21 071 . . . B 2 47.502 -14.713 18.004 1 16.76 ? C21 071 1 A 1 
HETATM 22 C C22 071 . . . B 2 48.443 -13.9 18.623 1 16.79 ? C22 071 1 A 1 
HETATM 23 C C23 071 . . . B 2 48.083 -12.698 19.202 1 15.2 ? C23 071 1 A 1 
HETATM 24 C C24 071 . . . B 2 46.755 -12.31 19.18 1 17.56 ? C24 071 1 A 1 
HETATM 25 O O25 071 . . . B 2 46.388 -11.128 19.771 1 18.51 ? O25 071 1 A 1 
HETATM 26 C C26 071 . . . B 2 47.357 -10.47 20.595 1 19.47 ? C26 071 1 A 1 
HETATM 27 N N30 071 . . . B 2 47.958 -15.918 17.398 1 17.87 ? N30 071 1 A 1 
HETATM 28 C C31 071 . . . B 2 47.213 -17.131 17.704 1 17.09 ? C31 071 1 A 1 
HETATM 29 C C32 071 . . . B 2 47.516 -18.251 16.712 1 15.45 ? C32 071 1 A 1 
HETATM 30 N N33 071 . . . B 2 48.945 -18.311 16.453 1 15.37 ? N33 071 1 A 1 
HETATM 31 C C34 071 . . . B 2 49.695 -17.099 16.17 1 16.62 ? C34 071 1 A 1 
HETATM 32 C C35 071 . . . B 2 49.416 -16.033 17.23 1 16.57 ? C35 071 1 A 1 
HETATM 33 C C36 071 . . . B 2 49.377 -19.51 15.742 1 13.79 ? C36 071 1 A 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           33 
#