data_3KBB # _model_server_result.job_id NXcduR2By4M5V7CjGl7LdQ _model_server_result.datetime_utc '2024-12-26 19:07:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kbb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":220}' # _entry.id 3KBB # _exptl.entry_id 3KBB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KBB _cell.length_a 48.16 _cell.length_b 66.698 _cell.length_c 83.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KBB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N GLU 2 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C ASP 7 A ASP 7 1_555 A N MSE 8 A MSE 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C MSE 8 A MSE 8 1_555 A N ASP 9 A ASP 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 A C LEU 12 A LEU 12 1_555 A N MSE 13 A MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 A C MSE 13 A MSE 13 1_555 A N ASP 14 A ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C ILE 42 A ILE 42 1_555 A N MSE 43 A MSE 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 A C MSE 43 A MSE 43 1_555 A N GLY 44 A GLY 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C LEU 54 A LEU 54 1_555 A N MSE 55 A MSE 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C MSE 55 A MSE 55 1_555 A N GLU 56 A GLU 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale10 A C VAL 129 A VAL 129 1_555 A N MSE 130 A MSE 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale11 A C MSE 130 A MSE 130 1_555 A N VAL 131 A VAL 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 3KBB _atom_sites.fract_transf_matrix[1][1] 0.020764 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014993 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 224 224 SO4 SO4 . C 2 SO4 A 1 225 225 SO4 SO4 . D 2 SO4 A 1 226 226 SO4 SO4 . E 2 SO4 A 1 227 227 SO4 SO4 . F 3 GOL A 1 218 218 GOL GOL . G 3 GOL A 1 220 220 GOL GOL . H 3 GOL A 1 221 221 GOL GOL . I 3 GOL A 1 222 222 GOL GOL . J 4 HOH A 1 217 217 HOH HOH . J 4 HOH A 2 219 219 HOH HOH . J 4 HOH A 3 223 223 HOH HOH . J 4 HOH A 4 228 1 HOH HOH . J 4 HOH A 5 229 229 HOH HOH . J 4 HOH A 6 230 230 HOH HOH . J 4 HOH A 7 231 231 HOH HOH . J 4 HOH A 8 232 232 HOH HOH . J 4 HOH A 9 233 233 HOH HOH . J 4 HOH A 10 234 234 HOH HOH . J 4 HOH A 11 235 235 HOH HOH . J 4 HOH A 12 236 236 HOH HOH . J 4 HOH A 13 237 237 HOH HOH . J 4 HOH A 14 238 238 HOH HOH . J 4 HOH A 15 239 239 HOH HOH . J 4 HOH A 16 240 240 HOH HOH . J 4 HOH A 17 241 241 HOH HOH . J 4 HOH A 18 242 242 HOH HOH . J 4 HOH A 19 243 2 HOH HOH . J 4 HOH A 20 244 244 HOH HOH . J 4 HOH A 21 245 245 HOH HOH . J 4 HOH A 22 246 246 HOH HOH . J 4 HOH A 23 247 247 HOH HOH . J 4 HOH A 24 248 248 HOH HOH . J 4 HOH A 25 249 3 HOH HOH . J 4 HOH A 26 250 250 HOH HOH . J 4 HOH A 27 251 251 HOH HOH . J 4 HOH A 28 252 252 HOH HOH . J 4 HOH A 29 253 253 HOH HOH . J 4 HOH A 30 254 5 HOH HOH . J 4 HOH A 31 255 6 HOH HOH . J 4 HOH A 32 256 256 HOH HOH . J 4 HOH A 33 257 7 HOH HOH . J 4 HOH A 34 258 258 HOH HOH . J 4 HOH A 35 259 259 HOH HOH . J 4 HOH A 36 260 260 HOH HOH . J 4 HOH A 37 261 8 HOH HOH . J 4 HOH A 38 262 9 HOH HOH . J 4 HOH A 39 263 10 HOH HOH . J 4 HOH A 40 264 11 HOH HOH . J 4 HOH A 41 265 12 HOH HOH . J 4 HOH A 42 266 13 HOH HOH . J 4 HOH A 43 267 14 HOH HOH . J 4 HOH A 44 268 15 HOH HOH . J 4 HOH A 45 269 16 HOH HOH . J 4 HOH A 46 270 17 HOH HOH . J 4 HOH A 47 271 18 HOH HOH . J 4 HOH A 48 272 19 HOH HOH . J 4 HOH A 49 273 20 HOH HOH . J 4 HOH A 50 274 21 HOH HOH . J 4 HOH A 51 275 22 HOH HOH . J 4 HOH A 52 276 23 HOH HOH . J 4 HOH A 53 277 24 HOH HOH . J 4 HOH A 54 278 25 HOH HOH . J 4 HOH A 55 279 26 HOH HOH . J 4 HOH A 56 280 27 HOH HOH . J 4 HOH A 57 281 28 HOH HOH . J 4 HOH A 58 282 29 HOH HOH . J 4 HOH A 59 283 30 HOH HOH . J 4 HOH A 60 284 31 HOH HOH . J 4 HOH A 61 285 32 HOH HOH . J 4 HOH A 62 286 33 HOH HOH . J 4 HOH A 63 287 34 HOH HOH . J 4 HOH A 64 288 35 HOH HOH . J 4 HOH A 65 289 36 HOH HOH . J 4 HOH A 66 290 37 HOH HOH . J 4 HOH A 67 291 38 HOH HOH . J 4 HOH A 68 292 39 HOH HOH . J 4 HOH A 69 293 40 HOH HOH . J 4 HOH A 70 294 41 HOH HOH . J 4 HOH A 71 295 42 HOH HOH . J 4 HOH A 72 296 43 HOH HOH . J 4 HOH A 73 297 44 HOH HOH . J 4 HOH A 74 298 45 HOH HOH . J 4 HOH A 75 299 46 HOH HOH . J 4 HOH A 76 300 47 HOH HOH . J 4 HOH A 77 301 48 HOH HOH . J 4 HOH A 78 302 49 HOH HOH . J 4 HOH A 79 303 50 HOH HOH . J 4 HOH A 80 304 51 HOH HOH . J 4 HOH A 81 305 52 HOH HOH . J 4 HOH A 82 306 53 HOH HOH . J 4 HOH A 83 307 54 HOH HOH . J 4 HOH A 84 308 56 HOH HOH . J 4 HOH A 85 309 57 HOH HOH . J 4 HOH A 86 310 58 HOH HOH . J 4 HOH A 87 311 59 HOH HOH . J 4 HOH A 88 312 60 HOH HOH . J 4 HOH A 89 313 61 HOH HOH . J 4 HOH A 90 314 62 HOH HOH . J 4 HOH A 91 315 63 HOH HOH . J 4 HOH A 92 316 64 HOH HOH . J 4 HOH A 93 317 65 HOH HOH . J 4 HOH A 94 318 66 HOH HOH . J 4 HOH A 95 319 67 HOH HOH . J 4 HOH A 96 320 68 HOH HOH . J 4 HOH A 97 321 69 HOH HOH . J 4 HOH A 98 322 70 HOH HOH . J 4 HOH A 99 323 71 HOH HOH . J 4 HOH A 100 324 72 HOH HOH . J 4 HOH A 101 325 73 HOH HOH . J 4 HOH A 102 326 74 HOH HOH . J 4 HOH A 103 327 75 HOH HOH . J 4 HOH A 104 328 76 HOH HOH . J 4 HOH A 105 329 77 HOH HOH . J 4 HOH A 106 330 78 HOH HOH . J 4 HOH A 107 331 79 HOH HOH . J 4 HOH A 108 332 80 HOH HOH . J 4 HOH A 109 333 81 HOH HOH . J 4 HOH A 110 334 82 HOH HOH . J 4 HOH A 111 335 83 HOH HOH . J 4 HOH A 112 336 84 HOH HOH . J 4 HOH A 113 337 85 HOH HOH . J 4 HOH A 114 338 86 HOH HOH . J 4 HOH A 115 339 87 HOH HOH . J 4 HOH A 116 340 88 HOH HOH . J 4 HOH A 117 341 89 HOH HOH . J 4 HOH A 118 342 90 HOH HOH . J 4 HOH A 119 343 91 HOH HOH . J 4 HOH A 120 344 92 HOH HOH . J 4 HOH A 121 345 93 HOH HOH . J 4 HOH A 122 346 94 HOH HOH . J 4 HOH A 123 347 95 HOH HOH . J 4 HOH A 124 348 97 HOH HOH . J 4 HOH A 125 349 98 HOH HOH . J 4 HOH A 126 350 99 HOH HOH . J 4 HOH A 127 351 100 HOH HOH . J 4 HOH A 128 352 101 HOH HOH . J 4 HOH A 129 353 102 HOH HOH . J 4 HOH A 130 354 103 HOH HOH . J 4 HOH A 131 355 104 HOH HOH . J 4 HOH A 132 356 105 HOH HOH . J 4 HOH A 133 357 106 HOH HOH . J 4 HOH A 134 358 107 HOH HOH . J 4 HOH A 135 359 108 HOH HOH . J 4 HOH A 136 360 109 HOH HOH . J 4 HOH A 137 361 111 HOH HOH . J 4 HOH A 138 362 112 HOH HOH . J 4 HOH A 139 363 113 HOH HOH . J 4 HOH A 140 364 114 HOH HOH . J 4 HOH A 141 365 115 HOH HOH . J 4 HOH A 142 366 116 HOH HOH . J 4 HOH A 143 367 117 HOH HOH . J 4 HOH A 144 368 119 HOH HOH . J 4 HOH A 145 369 121 HOH HOH . J 4 HOH A 146 370 122 HOH HOH . J 4 HOH A 147 371 123 HOH HOH . J 4 HOH A 148 372 124 HOH HOH . J 4 HOH A 149 373 125 HOH HOH . J 4 HOH A 150 374 126 HOH HOH . J 4 HOH A 151 375 127 HOH HOH . J 4 HOH A 152 376 128 HOH HOH . J 4 HOH A 153 377 129 HOH HOH . J 4 HOH A 154 378 130 HOH HOH . J 4 HOH A 155 379 131 HOH HOH . J 4 HOH A 156 380 132 HOH HOH . J 4 HOH A 157 381 134 HOH HOH . J 4 HOH A 158 382 135 HOH HOH . J 4 HOH A 159 383 136 HOH HOH . J 4 HOH A 160 384 137 HOH HOH . J 4 HOH A 161 385 140 HOH HOH . J 4 HOH A 162 386 141 HOH HOH . J 4 HOH A 163 387 142 HOH HOH . J 4 HOH A 164 388 145 HOH HOH . J 4 HOH A 165 389 146 HOH HOH . J 4 HOH A 166 390 147 HOH HOH . J 4 HOH A 167 391 148 HOH HOH . J 4 HOH A 168 392 149 HOH HOH . J 4 HOH A 169 393 150 HOH HOH . J 4 HOH A 170 394 152 HOH HOH . J 4 HOH A 171 395 153 HOH HOH . J 4 HOH A 172 396 154 HOH HOH . J 4 HOH A 173 397 155 HOH HOH . J 4 HOH A 174 398 156 HOH HOH . J 4 HOH A 175 399 157 HOH HOH . J 4 HOH A 176 400 158 HOH HOH . J 4 HOH A 177 401 159 HOH HOH . J 4 HOH A 178 402 160 HOH HOH . J 4 HOH A 179 403 162 HOH HOH . J 4 HOH A 180 404 166 HOH HOH . J 4 HOH A 181 405 170 HOH HOH . J 4 HOH A 182 406 171 HOH HOH . J 4 HOH A 183 407 172 HOH HOH . J 4 HOH A 184 408 173 HOH HOH . J 4 HOH A 185 409 174 HOH HOH . J 4 HOH A 186 410 175 HOH HOH . J 4 HOH A 187 411 176 HOH HOH . J 4 HOH A 188 412 177 HOH HOH . J 4 HOH A 189 413 179 HOH HOH . J 4 HOH A 190 414 180 HOH HOH . J 4 HOH A 191 415 182 HOH HOH . J 4 HOH A 192 416 184 HOH HOH . J 4 HOH A 193 417 185 HOH HOH . J 4 HOH A 194 418 186 HOH HOH . J 4 HOH A 195 419 187 HOH HOH . J 4 HOH A 196 420 188 HOH HOH . J 4 HOH A 197 421 189 HOH HOH . J 4 HOH A 198 422 190 HOH HOH . J 4 HOH A 199 423 191 HOH HOH . J 4 HOH A 200 424 192 HOH HOH . J 4 HOH A 201 425 193 HOH HOH . J 4 HOH A 202 426 194 HOH HOH . J 4 HOH A 203 427 195 HOH HOH . J 4 HOH A 204 428 196 HOH HOH . J 4 HOH A 205 429 197 HOH HOH . J 4 HOH A 206 430 198 HOH HOH . J 4 HOH A 207 431 199 HOH HOH . J 4 HOH A 208 432 200 HOH HOH . J 4 HOH A 209 433 201 HOH HOH . J 4 HOH A 210 434 202 HOH HOH . J 4 HOH A 211 435 203 HOH HOH . J 4 HOH A 212 436 205 HOH HOH . J 4 HOH A 213 437 207 HOH HOH . J 4 HOH A 214 438 208 HOH HOH . J 4 HOH A 215 439 210 HOH HOH . J 4 HOH A 216 440 211 HOH HOH . J 4 HOH A 217 441 212 HOH HOH . J 4 HOH A 218 442 213 HOH HOH . J 4 HOH A 219 443 214 HOH HOH . J 4 HOH A 220 444 215 HOH HOH . J 4 HOH A 221 445 216 HOH HOH . J 4 HOH A 222 446 218 HOH HOH . J 4 HOH A 223 447 220 HOH HOH . J 4 HOH A 224 448 221 HOH HOH . J 4 HOH A 225 449 222 HOH HOH . J 4 HOH A 226 450 224 HOH HOH . J 4 HOH A 227 451 225 HOH HOH . J 4 HOH A 228 452 226 HOH HOH . J 4 HOH A 229 453 227 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 3 -15.285 -5.461 12.628 0.5 31.73 ? C1 GOL 220 A 1 HETATM 2 O O1 GOL . . . G 3 -14.95 -6.831 12.813 0.5 31.92 ? O1 GOL 220 A 1 HETATM 3 C C2 GOL . . . G 3 -16.251 -5.026 13.73 0.5 33.17 ? C2 GOL 220 A 1 HETATM 4 O O2 GOL . . . G 3 -15.671 -5.087 15.01 0.5 33.62 ? O2 GOL 220 A 1 HETATM 5 C C3 GOL . . . G 3 -16.757 -3.608 13.523 0.5 32.57 ? C3 GOL 220 A 1 HETATM 6 O O3 GOL . . . G 3 -18.164 -3.613 13.666 0.5 33 ? O3 GOL 220 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 6 #