data_3KBH # _model_server_result.job_id Ops_42syszsl5m_GIwQGQA _model_server_result.datetime_utc '2024-11-04 20:35:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kbh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1486}' # _entry.id 3KBH # _exptl.entry_id 3KBH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KBH _cell.length_a 77.764 _cell.length_b 77.764 _cell.length_c 631.095 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KBH _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J,K,L,Q,R,S,T 1 1 C,D,G,H,M,N,O,P,U,V,W,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 115 A CYS 133 1_555 A SG CYS 123 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf2 A SG CYS 326 A CYS 344 1_555 A SG CYS 343 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 512 A CYS 530 1_555 A SG CYS 524 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 B SG CYS 17 E CYS 497 1_555 B SG CYS 20 E CYS 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf5 B SG CYS 36 E CYS 516 1_555 B SG CYS 87 E CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf6 B SG CYS 70 E CYS 550 1_555 B SG CYS 97 E CYS 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf7 C SG CYS 115 B CYS 133 1_555 C SG CYS 123 B CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf8 C SG CYS 326 B CYS 344 1_555 C SG CYS 343 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf9 C SG CYS 512 B CYS 530 1_555 C SG CYS 524 B CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf10 D SG CYS 17 F CYS 497 1_555 D SG CYS 20 F CYS 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf11 D SG CYS 36 F CYS 516 1_555 D SG CYS 87 F CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf12 D SG CYS 70 F CYS 550 1_555 D SG CYS 97 F CYS 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf13 E SG CYS 115 C CYS 133 1_555 E SG CYS 123 C CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf14 E SG CYS 326 C CYS 344 1_555 E SG CYS 343 C CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf15 E SG CYS 512 C CYS 530 1_555 E SG CYS 524 C CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf16 F SG CYS 17 G CYS 497 1_555 F SG CYS 20 G CYS 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf17 F SG CYS 36 G CYS 516 1_555 F SG CYS 87 G CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf18 F SG CYS 70 G CYS 550 1_555 F SG CYS 97 G CYS 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf19 G SG CYS 115 D CYS 133 1_555 G SG CYS 123 D CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf20 G SG CYS 326 D CYS 344 1_555 G SG CYS 343 D CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf21 G SG CYS 512 D CYS 530 1_555 G SG CYS 524 D CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf22 H SG CYS 17 H CYS 497 1_555 H SG CYS 20 H CYS 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf23 H SG CYS 36 H CYS 516 1_555 H SG CYS 87 H CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf24 H SG CYS 70 H CYS 550 1_555 H SG CYS 97 H CYS 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? covale ? covale1 A ND2 ASN 72 A ASN 90 1_555 I C1 NAG . A NAG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale2 A ND2 ASN 528 A ASN 546 1_555 J C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? covale ? covale3 B ND2 ASN 6 E ASN 486 1_555 K C1 NAG . E NAG 1486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 B ND2 ASN 32 E ASN 512 1_555 L C1 NAG . E NAG 1512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? covale ? covale5 C ND2 ASN 72 B ASN 90 1_555 M C1 NAG . B NAG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale6 C ND2 ASN 528 B ASN 546 1_555 N C1 NAG . B NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? covale ? covale7 D ND2 ASN 6 F ASN 486 1_555 O C1 NAG . F NAG 1486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale8 D ND2 ASN 32 F ASN 512 1_555 P C1 NAG . F NAG 1512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.486 ? covale ? covale9 E ND2 ASN 72 C ASN 90 1_555 Q C1 NAG . C NAG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale10 E ND2 ASN 528 C ASN 546 1_555 R C1 NAG . C NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.48 ? covale ? covale11 F ND2 ASN 6 G ASN 486 1_555 S C1 NAG . G NAG 1486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale12 F ND2 ASN 32 G ASN 512 1_555 T C1 NAG . G NAG 1512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.486 ? covale ? covale13 G ND2 ASN 72 D ASN 90 1_555 U C1 NAG . D NAG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale14 G ND2 ASN 528 D ASN 546 1_555 V C1 NAG . D NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? covale ? covale15 H ND2 ASN 6 H ASN 486 1_555 W C1 NAG . H NAG 1486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale16 H ND2 ASN 32 H ASN 512 1_555 X C1 NAG . H NAG 1512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.482 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3KBH _atom_sites.fract_transf_matrix[1][1] 0.012859 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012859 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001585 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 NAG A 1 800 800 NAG NAG . J 3 NAG A 1 801 801 NAG NAG . K 3 NAG E 1 1486 1486 NAG NAG . L 3 NAG E 1 1512 1512 NAG NAG . M 3 NAG B 1 800 800 NAG NAG . N 3 NAG B 1 801 801 NAG NAG . O 3 NAG F 1 1486 1486 NAG NAG . P 3 NAG F 1 1512 1512 NAG NAG . Q 3 NAG C 1 800 800 NAG NAG . R 3 NAG C 1 801 801 NAG NAG . S 3 NAG G 1 1486 1486 NAG NAG . T 3 NAG G 1 1512 1512 NAG NAG . U 3 NAG D 1 800 800 NAG NAG . V 3 NAG D 1 801 801 NAG NAG . W 3 NAG H 1 1486 1486 NAG NAG . X 3 NAG H 1 1512 1512 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . O 3 -53.855 -50.501 70.276 1 86.23 ? C1 NAG 1486 F 1 HETATM 2 C C2 NAG . . . O 3 -53.664 -51.87 70.947 1 101.78 ? C2 NAG 1486 F 1 HETATM 3 C C3 NAG . . . O 3 -52.935 -52.863 70.036 1 103.51 ? C3 NAG 1486 F 1 HETATM 4 C C4 NAG . . . O 3 -53.489 -52.826 68.613 1 104.28 ? C4 NAG 1486 F 1 HETATM 5 C C5 NAG . . . O 3 -53.52 -51.386 68.108 1 102.32 ? C5 NAG 1486 F 1 HETATM 6 C C6 NAG . . . O 3 -54.076 -51.239 66.702 1 104.19 ? C6 NAG 1486 F 1 HETATM 7 C C7 NAG . . . O 3 -53.559 -51.625 73.386 1 107.9 ? C7 NAG 1486 F 1 HETATM 8 C C8 NAG . . . O 3 -52.68 -51.492 74.594 1 108.36 ? C8 NAG 1486 F 1 HETATM 9 N N2 NAG . . . O 3 -52.947 -51.735 72.206 1 105.06 ? N2 NAG 1486 F 1 HETATM 10 O O3 NAG . . . O 3 -53.04 -54.175 70.547 1 104.9 ? O3 NAG 1486 F 1 HETATM 11 O O4 NAG . . . O 3 -52.69 -53.635 67.785 1 105.71 ? O4 NAG 1486 F 1 HETATM 12 O O5 NAG . . . O 3 -54.366 -50.67 68.968 1 95.07 ? O5 NAG 1486 F 1 HETATM 13 O O6 NAG . . . O 3 -54.101 -49.866 66.391 1 104.69 ? O6 NAG 1486 F 1 HETATM 14 O O7 NAG . . . O 3 -54.78 -51.624 73.521 1 109.07 ? O7 NAG 1486 F 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #