data_3KBR # _model_server_result.job_id 0ysZ5A1hEdxxY2cDXNO8YQ _model_server_result.datetime_utc '2024-11-06 01:49:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kbr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":266}' # _entry.id 3KBR # _exptl.entry_id 3KBR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KBR _cell.length_a 126.39 _cell.length_b 126.39 _cell.length_c 88.981 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KBR _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 88.981 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 88.981 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 88.981 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 109 A CYS 131 1_555 A SG CYS 188 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A C ASP 43 A ASP 65 1_555 A N MSE 44 A MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 44 A MSE 66 1_555 A N ALA 45 A ALA 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C LEU 66 A LEU 88 1_555 A N MSE 67 A MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 A C MSE 67 A MSE 89 1_555 A N ARG 68 A ARG 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 A C ALA 78 A ALA 100 1_555 A N MSE 79 A MSE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 A C MSE 79 A MSE 101 1_555 A N SER 80 A SER 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C LEU 169 A LEU 191 1_555 A N MSE 170 A MSE 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C MSE 170 A MSE 192 1_555 A N MSE 171 A MSE 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 A C MSE 171 A MSE 193 1_555 A N THR 172 A THR 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale10 A C ARG 231 A ARG 253 1_555 A N MSE 232 A MSE 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 A C MSE 232 A MSE 254 1_555 A N GLU 233 A GLU 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 B NI NI . A NI 1 1_555 A OE1 GLU 112 A GLU 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc2 B NI NI . A NI 1 1_555 A OE2 GLU 112 A GLU 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc3 B NI NI . A NI 1 1_555 A NE2 HIS 191 A HIS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 3KBR _atom_sites.fract_transf_matrix[1][1] 0.007912 _atom_sites.fract_transf_matrix[1][2] 0.004568 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009136 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 1 1 NI NI . C 3 CL A 1 262 1 CL CL . D 4 GOL A 1 263 1 GOL GOL . E 4 GOL A 1 2 2 GOL GOL . F 4 GOL A 1 3 3 GOL GOL . G 5 FMT A 1 265 2 FMT FMT . H 4 GOL A 1 4 4 GOL GOL . I 4 GOL A 1 5 5 GOL GOL . J 5 FMT A 1 264 1 FMT FMT . K 6 EPE A 1 266 1 EPE EPE . L 7 HOH A 1 6 6 HOH HOH . L 7 HOH A 2 7 7 HOH HOH . L 7 HOH A 3 8 8 HOH HOH . L 7 HOH A 4 9 9 HOH HOH . L 7 HOH A 5 10 10 HOH HOH . L 7 HOH A 6 11 11 HOH HOH . L 7 HOH A 7 12 12 HOH HOH . L 7 HOH A 8 13 13 HOH HOH . L 7 HOH A 9 14 14 HOH HOH . L 7 HOH A 10 15 15 HOH HOH . L 7 HOH A 11 16 16 HOH HOH . L 7 HOH A 12 17 17 HOH HOH . L 7 HOH A 13 18 18 HOH HOH . L 7 HOH A 14 19 19 HOH HOH . L 7 HOH A 15 20 20 HOH HOH . L 7 HOH A 16 21 21 HOH HOH . L 7 HOH A 17 22 22 HOH HOH . L 7 HOH A 18 267 1 HOH HOH . L 7 HOH A 19 268 2 HOH HOH . L 7 HOH A 20 269 3 HOH HOH . L 7 HOH A 21 270 4 HOH HOH . L 7 HOH A 22 271 5 HOH HOH . L 7 HOH A 23 272 23 HOH HOH . L 7 HOH A 24 273 24 HOH HOH . L 7 HOH A 25 274 25 HOH HOH . L 7 HOH A 26 275 26 HOH HOH . L 7 HOH A 27 276 27 HOH HOH . L 7 HOH A 28 277 28 HOH HOH . L 7 HOH A 29 278 29 HOH HOH . L 7 HOH A 30 279 30 HOH HOH . L 7 HOH A 31 280 31 HOH HOH . L 7 HOH A 32 281 32 HOH HOH . L 7 HOH A 33 282 33 HOH HOH . L 7 HOH A 34 283 34 HOH HOH . L 7 HOH A 35 284 35 HOH HOH . L 7 HOH A 36 285 36 HOH HOH . L 7 HOH A 37 286 37 HOH HOH . L 7 HOH A 38 287 38 HOH HOH . L 7 HOH A 39 288 39 HOH HOH . L 7 HOH A 40 289 40 HOH HOH . L 7 HOH A 41 290 41 HOH HOH . L 7 HOH A 42 291 42 HOH HOH . L 7 HOH A 43 292 43 HOH HOH . L 7 HOH A 44 293 44 HOH HOH . L 7 HOH A 45 294 45 HOH HOH . L 7 HOH A 46 295 46 HOH HOH . L 7 HOH A 47 296 47 HOH HOH . L 7 HOH A 48 297 48 HOH HOH . L 7 HOH A 49 298 49 HOH HOH . L 7 HOH A 50 299 50 HOH HOH . L 7 HOH A 51 300 51 HOH HOH . L 7 HOH A 52 301 52 HOH HOH . L 7 HOH A 53 302 53 HOH HOH . L 7 HOH A 54 303 54 HOH HOH . L 7 HOH A 55 304 55 HOH HOH . L 7 HOH A 56 305 56 HOH HOH . L 7 HOH A 57 306 57 HOH HOH . L 7 HOH A 58 307 58 HOH HOH . L 7 HOH A 59 308 59 HOH HOH . L 7 HOH A 60 309 60 HOH HOH . L 7 HOH A 61 310 61 HOH HOH . L 7 HOH A 62 311 62 HOH HOH . L 7 HOH A 63 312 63 HOH HOH . L 7 HOH A 64 313 64 HOH HOH . L 7 HOH A 65 314 65 HOH HOH . L 7 HOH A 66 315 66 HOH HOH . L 7 HOH A 67 316 67 HOH HOH . L 7 HOH A 68 317 68 HOH HOH . L 7 HOH A 69 318 69 HOH HOH . L 7 HOH A 70 319 70 HOH HOH . L 7 HOH A 71 320 71 HOH HOH . L 7 HOH A 72 321 72 HOH HOH . L 7 HOH A 73 322 73 HOH HOH . L 7 HOH A 74 323 74 HOH HOH . L 7 HOH A 75 324 75 HOH HOH . L 7 HOH A 76 325 76 HOH HOH . L 7 HOH A 77 326 77 HOH HOH . L 7 HOH A 78 327 78 HOH HOH . L 7 HOH A 79 328 79 HOH HOH . L 7 HOH A 80 329 80 HOH HOH . L 7 HOH A 81 330 81 HOH HOH . L 7 HOH A 82 331 82 HOH HOH . L 7 HOH A 83 332 83 HOH HOH . L 7 HOH A 84 333 84 HOH HOH . L 7 HOH A 85 334 85 HOH HOH . L 7 HOH A 86 335 86 HOH HOH . L 7 HOH A 87 336 87 HOH HOH . L 7 HOH A 88 337 88 HOH HOH . L 7 HOH A 89 338 89 HOH HOH . L 7 HOH A 90 339 90 HOH HOH . L 7 HOH A 91 340 91 HOH HOH . L 7 HOH A 92 341 92 HOH HOH . L 7 HOH A 93 342 93 HOH HOH . L 7 HOH A 94 343 94 HOH HOH . L 7 HOH A 95 344 95 HOH HOH . L 7 HOH A 96 345 96 HOH HOH . L 7 HOH A 97 346 97 HOH HOH . L 7 HOH A 98 347 98 HOH HOH . L 7 HOH A 99 348 99 HOH HOH . L 7 HOH A 100 349 100 HOH HOH . L 7 HOH A 101 350 101 HOH HOH . L 7 HOH A 102 351 102 HOH HOH . L 7 HOH A 103 352 103 HOH HOH . L 7 HOH A 104 353 104 HOH HOH . L 7 HOH A 105 354 105 HOH HOH . L 7 HOH A 106 355 106 HOH HOH . L 7 HOH A 107 356 107 HOH HOH . L 7 HOH A 108 357 108 HOH HOH . L 7 HOH A 109 358 109 HOH HOH . L 7 HOH A 110 359 110 HOH HOH . L 7 HOH A 111 360 111 HOH HOH . L 7 HOH A 112 361 112 HOH HOH . L 7 HOH A 113 362 113 HOH HOH . L 7 HOH A 114 363 114 HOH HOH . L 7 HOH A 115 364 115 HOH HOH . L 7 HOH A 116 365 116 HOH HOH . L 7 HOH A 117 366 117 HOH HOH . L 7 HOH A 118 367 118 HOH HOH . L 7 HOH A 119 368 119 HOH HOH . L 7 HOH A 120 369 120 HOH HOH . L 7 HOH A 121 370 121 HOH HOH . L 7 HOH A 122 371 122 HOH HOH . L 7 HOH A 123 372 123 HOH HOH . L 7 HOH A 124 373 124 HOH HOH . L 7 HOH A 125 374 125 HOH HOH . L 7 HOH A 126 375 126 HOH HOH . L 7 HOH A 127 376 127 HOH HOH . L 7 HOH A 128 377 128 HOH HOH . L 7 HOH A 129 378 129 HOH HOH . L 7 HOH A 130 379 130 HOH HOH . L 7 HOH A 131 380 131 HOH HOH . L 7 HOH A 132 381 132 HOH HOH . L 7 HOH A 133 382 133 HOH HOH . L 7 HOH A 134 383 134 HOH HOH . L 7 HOH A 135 384 135 HOH HOH . L 7 HOH A 136 385 136 HOH HOH . L 7 HOH A 137 386 137 HOH HOH . L 7 HOH A 138 387 138 HOH HOH . L 7 HOH A 139 388 139 HOH HOH . L 7 HOH A 140 389 140 HOH HOH . L 7 HOH A 141 390 141 HOH HOH . L 7 HOH A 142 391 142 HOH HOH . L 7 HOH A 143 392 143 HOH HOH . L 7 HOH A 144 393 144 HOH HOH . L 7 HOH A 145 394 145 HOH HOH . L 7 HOH A 146 395 146 HOH HOH . L 7 HOH A 147 396 147 HOH HOH . L 7 HOH A 148 397 148 HOH HOH . L 7 HOH A 149 398 149 HOH HOH . L 7 HOH A 150 399 150 HOH HOH . L 7 HOH A 151 400 151 HOH HOH . L 7 HOH A 152 401 152 HOH HOH . L 7 HOH A 153 402 153 HOH HOH . L 7 HOH A 154 403 154 HOH HOH . L 7 HOH A 155 404 155 HOH HOH . L 7 HOH A 156 405 156 HOH HOH . L 7 HOH A 157 406 157 HOH HOH . L 7 HOH A 158 407 158 HOH HOH . L 7 HOH A 159 408 159 HOH HOH . L 7 HOH A 160 409 160 HOH HOH . L 7 HOH A 161 410 161 HOH HOH . L 7 HOH A 162 411 162 HOH HOH . L 7 HOH A 163 412 163 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . K 6 24.677 8.177 27.878 1 28.68 ? N1 EPE 266 A 1 HETATM 2 C C2 EPE . . . K 6 25.649 8.61 26.867 1 31.32 ? C2 EPE 266 A 1 HETATM 3 C C3 EPE . . . K 6 26.967 7.865 27.108 1 34.97 ? C3 EPE 266 A 1 HETATM 4 N N4 EPE . . . K 6 27.406 7.936 28.494 1 32.61 ? N4 EPE 266 A 1 HETATM 5 C C5 EPE . . . K 6 26.396 7.747 29.516 1 30.63 ? C5 EPE 266 A 1 HETATM 6 C C6 EPE . . . K 6 25.124 8.543 29.222 1 33.34 ? C6 EPE 266 A 1 HETATM 7 C C7 EPE . . . K 6 28.712 7.365 28.82 1 35.4 ? C7 EPE 266 A 1 HETATM 8 C C8 EPE . . . K 6 29.778 7.598 27.751 1 39.01 ? C8 EPE 266 A 1 HETATM 9 O O8 EPE . . . K 6 30.071 8.975 27.653 1 41.23 ? O8 EPE 266 A 1 HETATM 10 C C9 EPE . . . K 6 23.362 8.771 27.609 1 26.74 ? C9 EPE 266 A 1 HETATM 11 C C10 EPE . . . K 6 22.574 7.797 26.737 1 21.03 ? C10 EPE 266 A 1 HETATM 12 S S EPE . . . K 6 21.057 8.637 26.242 1 24.72 ? S EPE 266 A 1 HETATM 13 O O1S EPE . . . K 6 20.466 9.104 27.476 1 26.98 ? O1S EPE 266 A 1 HETATM 14 O O2S EPE . . . K 6 20.238 7.674 25.519 1 26.56 ? O2S EPE 266 A 1 HETATM 15 O O3S EPE . . . K 6 21.368 9.751 25.342 1 25.56 ? O3S EPE 266 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #