data_3KBX # _model_server_result.job_id 3bLdAM9dEubWz8dU1hS11Q _model_server_result.datetime_utc '2024-12-26 11:38:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kbx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":72}' # _entry.id 3KBX # _exptl.entry_id 3KBX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KBX _cell.length_a 178.01 _cell.length_b 178.01 _cell.length_c 77.311 _cell.Z_PDB 60 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KBX _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,F,G,H 1 1,2 B,C,I,J 2 1 D,E,K,L 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 89.005 -154.161182 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 11 1_555 A SG CYS 35 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf2 A SG CYS 12 A CYS 12 1_555 A SG CYS 51 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? disulf ? disulf3 B SG CYS 11 B CYS 11 1_555 B SG CYS 35 B CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf4 B SG CYS 12 B CYS 12 1_555 B SG CYS 51 B CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? disulf ? disulf5 C SG CYS 11 C CYS 11 1_555 C SG CYS 35 C CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf6 C SG CYS 12 C CYS 12 1_555 C SG CYS 51 C CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? disulf ? disulf7 D SG CYS 11 D CYS 11 1_555 D SG CYS 35 D CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf8 D SG CYS 12 D CYS 12 1_555 D SG CYS 51 D CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf9 E SG CYS 11 E CYS 11 1_555 E SG CYS 35 E CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf10 E SG CYS 12 E CYS 12 1_555 E SG CYS 51 E CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? covale ? covale1 A C TYR 62 A TYR 62 1_555 A N MSE 63 A MSE 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale2 A C MSE 63 A MSE 63 1_555 A N SER 64 A SER 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 B C TYR 62 B TYR 62 1_555 B N MSE 63 B MSE 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale4 B C MSE 63 B MSE 63 1_555 B N SER 64 B SER 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 C C TYR 62 C TYR 62 1_555 C N MSE 63 C MSE 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 C C MSE 63 C MSE 63 1_555 C N SER 64 C SER 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 D C TYR 62 D TYR 62 1_555 D N MSE 63 D MSE 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 D C MSE 63 D MSE 63 1_555 D N SER 64 D SER 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale9 E C TYR 62 E TYR 62 1_555 E N MSE 63 E MSE 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 E C MSE 63 E MSE 63 1_555 E N SER 64 E SER 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A O SER 33 A SER 33 1_555 F K K . A K 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? metalc ? metalc2 A O CYS 35 A CYS 35 1_555 F K K . A K 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 3KBX _atom_sites.fract_transf_matrix[1][1] 0.005618 _atom_sites.fract_transf_matrix[1][2] 0.003243 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006487 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 K A 1 71 1 K K . G 3 ACT A 1 72 1 ACT ACT . H 4 HOH A 1 73 1 HOH HOH . H 4 HOH A 2 74 5 HOH HOH . H 4 HOH A 3 75 12 HOH HOH . H 4 HOH A 4 76 23 HOH HOH . H 4 HOH A 5 78 38 HOH HOH . H 4 HOH A 6 79 39 HOH HOH . H 4 HOH A 7 80 43 HOH HOH . I 4 HOH B 1 71 3 HOH HOH . I 4 HOH B 2 72 4 HOH HOH . I 4 HOH B 3 73 8 HOH HOH . I 4 HOH B 4 74 13 HOH HOH . I 4 HOH B 5 75 17 HOH HOH . I 4 HOH B 6 76 19 HOH HOH . I 4 HOH B 7 77 21 HOH HOH . I 4 HOH B 8 78 22 HOH HOH . I 4 HOH B 9 79 24 HOH HOH . I 4 HOH B 10 80 28 HOH HOH . I 4 HOH B 11 81 30 HOH HOH . I 4 HOH B 12 82 34 HOH HOH . I 4 HOH B 13 83 41 HOH HOH . J 4 HOH C 1 71 2 HOH HOH . J 4 HOH C 2 72 6 HOH HOH . J 4 HOH C 3 73 7 HOH HOH . J 4 HOH C 4 74 9 HOH HOH . J 4 HOH C 5 75 10 HOH HOH . J 4 HOH C 6 76 11 HOH HOH . J 4 HOH C 7 77 25 HOH HOH . J 4 HOH C 8 78 16 HOH HOH . J 4 HOH C 9 79 18 HOH HOH . J 4 HOH C 10 80 27 HOH HOH . J 4 HOH C 11 81 32 HOH HOH . J 4 HOH C 12 82 14 HOH HOH . K 4 HOH D 1 71 15 HOH HOH . K 4 HOH D 2 72 20 HOH HOH . K 4 HOH D 3 73 29 HOH HOH . K 4 HOH D 4 74 31 HOH HOH . K 4 HOH D 5 75 35 HOH HOH . K 4 HOH D 6 76 40 HOH HOH . L 4 HOH E 1 71 26 HOH HOH . L 4 HOH E 2 84 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . G 3 38.418 -66.296 -26.123 1 98.82 ? C ACT 72 A 1 HETATM 2 O O ACT . . . G 3 39.543 -65.796 -26.388 1 100.96 ? O ACT 72 A 1 HETATM 3 O OXT ACT . . . G 3 38.211 -67.521 -26.323 1 93.5 ? OXT ACT 72 A 1 HETATM 4 C CH3 ACT . . . G 3 37.331 -65.436 -25.573 1 97.24 ? CH3 ACT 72 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #