data_3KC3
#
_model_server_result.job_id            6U2ohbYVeiyvr3krt3zFSA 
_model_server_result.datetime_utc      '2024-12-26 20:28:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kc3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":500}' 
#
_entry.id    3KC3 
#
_exptl.entry_id    3KC3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              342.354 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N~4~-[7-(1-benzofuran-2-yl)-1H-indazol-5-yl]pyrimidine-2,4-diamine 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3KC3 
_cell.length_a            139.351 
_cell.length_b            179.793 
_cell.length_c            214.376 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KC3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 software_defined_assembly 1 
PISA trimeric 3 software_defined_assembly 2 
PISA trimeric 3 software_defined_assembly 3 
PISA trimeric 3 software_defined_assembly 4 
PISA dodecameric 12 software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,F,H,M,R,S,X,BA,DA 1 1 
B,E,J,N,Q,U,AA 2 1 
C,I,L,O,T,W,Y,EA,FA 3 1 
D,G,K,P,V,Z,CA 4 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA 5 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
#
_chem_comp.formula           'C19 H14 N6 O' 
_chem_comp.formula_weight    342.354 
_chem_comp.id                MK2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N~4~-[7-(1-benzofuran-2-yl)-1H-indazol-5-yl]pyrimidine-2,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     N4-[7-(1-benzofuran-2-yl)-1H-indazol-5-yl]pyrimidine-2,4-diamine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 MK2 doub 237 n y 
C1 C3 MK2 sing 238 n y 
C1 H1 MK2 sing 239 n n 
C2 C4 MK2 sing 240 n y 
C2 H2 MK2 sing 241 n n 
C3 C11 MK2 doub 242 n y 
C3 H3 MK2 sing 243 n n 
C4 C12 MK2 doub 244 n y 
C4 H4 MK2 sing 245 n n 
C13 C5 MK2 doub 246 n y 
C5 C6 MK2 sing 247 n y 
C5 H5 MK2 sing 248 n n 
C6 N22 MK2 doub 249 n y 
C6 H6 MK2 sing 250 n n 
C11 C7 MK2 sing 251 n y 
C17 C7 MK2 doub 252 n y 
C7 H7 MK2 sing 253 n n 
C15 C8 MK2 doub 254 n y 
C8 C14 MK2 sing 255 n y 
C8 H8 MK2 sing 256 n n 
C16 C9 MK2 sing 257 n y 
C9 C14 MK2 doub 258 n y 
C9 H9 MK2 sing 259 n n 
N23 C10 MK2 doub 260 n y 
C10 C15 MK2 sing 261 n y 
C10 H10 MK2 sing 262 n n 
C12 C11 MK2 sing 263 n y 
C12 O26 MK2 sing 264 n y 
N25 C13 MK2 sing 265 n n 
C13 N24 MK2 sing 266 n y 
C14 N25 MK2 sing 267 n n 
C18 C15 MK2 sing 268 n y 
C17 C16 MK2 sing 269 n y 
C18 C16 MK2 doub 270 n y 
O26 C17 MK2 sing 271 n y 
N21 C18 MK2 sing 272 n y 
N24 C19 MK2 doub 273 n y 
N20 C19 MK2 sing 274 n n 
C19 N22 MK2 sing 275 n y 
N20 HN20 MK2 sing 276 n n 
N20 HN2A MK2 sing 277 n n 
N21 N23 MK2 sing 278 n y 
N25 HN25 MK2 sing 279 n n 
N21 HN21 MK2 sing 280 n n 
#
_atom_sites.entry_id                     3KC3 
_atom_sites.fract_transf_matrix[1][1]    0.007176 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005562 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004665 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 MK2 A 1 500 500 MK2 MK2 . 
N 2 MK2 B 1 500 500 MK2 MK2 . 
O 2 MK2 C 1 500 500 MK2 MK2 . 
P 2 MK2 D 1 500 500 MK2 MK2 . 
Q 2 MK2 E 1 500 500 MK2 MK2 . 
R 2 MK2 F 1 500 500 MK2 MK2 . 
S 2 MK2 H 1 500 500 MK2 MK2 . 
T 2 MK2 I 1 500 500 MK2 MK2 . 
U 2 MK2 J 1 500 500 MK2 MK2 . 
V 2 MK2 K 1 500 500 MK2 MK2 . 
W 2 MK2 L 1 500 500 MK2 MK2 . 
X 3 HOH A 1 5 5 HOH HOH . 
X 3 HOH A 2 9 9 HOH HOH . 
X 3 HOH A 3 15 15 HOH HOH . 
Y 3 HOH C 1 2 2 HOH HOH . 
Y 3 HOH C 2 4 4 HOH HOH . 
Y 3 HOH C 3 8 8 HOH HOH . 
Y 3 HOH C 4 12 12 HOH HOH . 
Y 3 HOH C 5 13 13 HOH HOH . 
Z 3 HOH D 1 17 17 HOH HOH . 
AA 3 HOH E 1 7 7 HOH HOH . 
AA 3 HOH E 2 14 14 HOH HOH . 
AA 3 HOH E 3 20 20 HOH HOH . 
BA 3 HOH F 1 6 6 HOH HOH . 
BA 3 HOH F 2 11 11 HOH HOH . 
BA 3 HOH F 3 18 18 HOH HOH . 
CA 3 HOH G 1 3 3 HOH HOH . 
DA 3 HOH H 1 1 1 HOH HOH . 
EA 3 HOH I 1 10 10 HOH HOH . 
EA 3 HOH I 2 19 19 HOH HOH . 
FA 3 HOH L 1 16 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MK2 . . . S 2 -19.048 42.035 -72.14 1 75.04 ? C1 MK2 500 H 1 
HETATM 2 C C2 MK2 . . . S 2 -19.966 41.599 -73.072 1 75.89 ? C2 MK2 500 H 1 
HETATM 3 C C3 MK2 . . . S 2 -18.893 41.384 -70.938 1 76.18 ? C3 MK2 500 H 1 
HETATM 4 C C4 MK2 . . . S 2 -20.785 40.504 -72.892 1 75.04 ? C4 MK2 500 H 1 
HETATM 5 C C5 MK2 . . . S 2 -19.873 34.122 -64.407 1 59.32 ? C5 MK2 500 H 1 
HETATM 6 C C6 MK2 . . . S 2 -20.171 33.145 -63.488 1 58.21 ? C6 MK2 500 H 1 
HETATM 7 C C7 MK2 . . . S 2 -19.856 39.356 -69.647 1 74.81 ? C7 MK2 500 H 1 
HETATM 8 C C8 MK2 . . . S 2 -22.518 35.072 -67.722 1 60.62 ? C8 MK2 500 H 1 
HETATM 9 C C9 MK2 . . . S 2 -20.867 36.81 -68.148 1 64.09 ? C9 MK2 500 H 1 
HETATM 10 C C10 MK2 . . . S 2 -24.182 35.1 -69.478 1 62.74 ? C10 MK2 500 H 1 
HETATM 11 C C11 MK2 . . . S 2 -19.702 40.275 -70.72 1 75.81 ? C11 MK2 500 H 1 
HETATM 12 C C12 MK2 . . . S 2 -20.609 39.872 -71.686 1 74.94 ? C12 MK2 500 H 1 
HETATM 13 C C13 MK2 . . . S 2 -20.863 34.468 -65.306 1 61.57 ? C13 MK2 500 H 1 
HETATM 14 C C14 MK2 . . . S 2 -21.368 35.76 -67.392 1 62.43 ? C14 MK2 500 H 1 
HETATM 15 C C15 MK2 . . . S 2 -23.036 35.587 -68.891 1 63.4 ? C15 MK2 500 H 1 
HETATM 16 C C16 MK2 . . . S 2 -21.406 37.311 -69.315 1 67.84 ? C16 MK2 500 H 1 
HETATM 17 C C17 MK2 . . . S 2 -20.834 38.449 -70.02 1 72.99 ? C17 MK2 500 H 1 
HETATM 18 C C18 MK2 . . . S 2 -22.556 36.647 -69.698 1 65.69 ? C18 MK2 500 H 1 
HETATM 19 C C19 MK2 . . . S 2 -22.264 32.956 -64.372 1 62.39 ? C19 MK2 500 H 1 
HETATM 20 N N20 MK2 . . . S 2 -23.546 32.41 -64.421 1 61.96 ? N20 MK2 500 H 1 
HETATM 21 N N21 MK2 . . . S 2 -23.381 36.821 -70.748 1 64.83 ? N21 MK2 500 H 1 
HETATM 22 N N22 MK2 . . . S 2 -21.365 32.543 -63.449 1 60.58 ? N22 MK2 500 H 1 
HETATM 23 N N23 MK2 . . . S 2 -24.34 35.883 -70.589 1 64.45 ? N23 MK2 500 H 1 
HETATM 24 N N24 MK2 . . . S 2 -22.067 33.894 -65.306 1 61.93 ? N24 MK2 500 H 1 
HETATM 25 N N25 MK2 . . . S 2 -20.6 35.463 -66.249 1 63.31 ? N25 MK2 500 H 1 
HETATM 26 O O26 MK2 . . . S 2 -21.301 38.767 -71.271 1 75.01 ? O26 MK2 500 H 1 
#
_model_server_stats.io_time_ms              74 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    61 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           26 
#