data_3KC3 # _model_server_result.job_id EPhEvcCZnpCoe_DOZf0zug _model_server_result.datetime_utc '2024-11-01 10:47:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kc3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":500}' # _entry.id 3KC3 # _exptl.entry_id 3KC3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 342.354 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~4~-[7-(1-benzofuran-2-yl)-1H-indazol-5-yl]pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KC3 _cell.length_a 139.351 _cell.length_b 179.793 _cell.length_c 214.376 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KC3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 software_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 PISA trimeric 3 software_defined_assembly 3 PISA trimeric 3 software_defined_assembly 4 PISA dodecameric 12 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,F,H,M,R,S,X,BA,DA 1 1 B,E,J,N,Q,U,AA 2 1 C,I,L,O,T,W,Y,EA,FA 3 1 D,G,K,P,V,Z,CA 4 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA 5 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N # _chem_comp.formula 'C19 H14 N6 O' _chem_comp.formula_weight 342.354 _chem_comp.id MK2 _chem_comp.mon_nstd_flag . _chem_comp.name N~4~-[7-(1-benzofuran-2-yl)-1H-indazol-5-yl]pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N4-[7-(1-benzofuran-2-yl)-1H-indazol-5-yl]pyrimidine-2,4-diamine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 MK2 doub 237 n y C1 C3 MK2 sing 238 n y C1 H1 MK2 sing 239 n n C2 C4 MK2 sing 240 n y C2 H2 MK2 sing 241 n n C3 C11 MK2 doub 242 n y C3 H3 MK2 sing 243 n n C4 C12 MK2 doub 244 n y C4 H4 MK2 sing 245 n n C13 C5 MK2 doub 246 n y C5 C6 MK2 sing 247 n y C5 H5 MK2 sing 248 n n C6 N22 MK2 doub 249 n y C6 H6 MK2 sing 250 n n C11 C7 MK2 sing 251 n y C17 C7 MK2 doub 252 n y C7 H7 MK2 sing 253 n n C15 C8 MK2 doub 254 n y C8 C14 MK2 sing 255 n y C8 H8 MK2 sing 256 n n C16 C9 MK2 sing 257 n y C9 C14 MK2 doub 258 n y C9 H9 MK2 sing 259 n n N23 C10 MK2 doub 260 n y C10 C15 MK2 sing 261 n y C10 H10 MK2 sing 262 n n C12 C11 MK2 sing 263 n y C12 O26 MK2 sing 264 n y N25 C13 MK2 sing 265 n n C13 N24 MK2 sing 266 n y C14 N25 MK2 sing 267 n n C18 C15 MK2 sing 268 n y C17 C16 MK2 sing 269 n y C18 C16 MK2 doub 270 n y O26 C17 MK2 sing 271 n y N21 C18 MK2 sing 272 n y N24 C19 MK2 doub 273 n y N20 C19 MK2 sing 274 n n C19 N22 MK2 sing 275 n y N20 HN20 MK2 sing 276 n n N20 HN2A MK2 sing 277 n n N21 N23 MK2 sing 278 n y N25 HN25 MK2 sing 279 n n N21 HN21 MK2 sing 280 n n # _atom_sites.entry_id 3KC3 _atom_sites.fract_transf_matrix[1][1] 0.007176 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004665 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 MK2 A 1 500 500 MK2 MK2 . N 2 MK2 B 1 500 500 MK2 MK2 . O 2 MK2 C 1 500 500 MK2 MK2 . P 2 MK2 D 1 500 500 MK2 MK2 . Q 2 MK2 E 1 500 500 MK2 MK2 . R 2 MK2 F 1 500 500 MK2 MK2 . S 2 MK2 H 1 500 500 MK2 MK2 . T 2 MK2 I 1 500 500 MK2 MK2 . U 2 MK2 J 1 500 500 MK2 MK2 . V 2 MK2 K 1 500 500 MK2 MK2 . W 2 MK2 L 1 500 500 MK2 MK2 . X 3 HOH A 1 5 5 HOH HOH . X 3 HOH A 2 9 9 HOH HOH . X 3 HOH A 3 15 15 HOH HOH . Y 3 HOH C 1 2 2 HOH HOH . Y 3 HOH C 2 4 4 HOH HOH . Y 3 HOH C 3 8 8 HOH HOH . Y 3 HOH C 4 12 12 HOH HOH . Y 3 HOH C 5 13 13 HOH HOH . Z 3 HOH D 1 17 17 HOH HOH . AA 3 HOH E 1 7 7 HOH HOH . AA 3 HOH E 2 14 14 HOH HOH . AA 3 HOH E 3 20 20 HOH HOH . BA 3 HOH F 1 6 6 HOH HOH . BA 3 HOH F 2 11 11 HOH HOH . BA 3 HOH F 3 18 18 HOH HOH . CA 3 HOH G 1 3 3 HOH HOH . DA 3 HOH H 1 1 1 HOH HOH . EA 3 HOH I 1 10 10 HOH HOH . EA 3 HOH I 2 19 19 HOH HOH . FA 3 HOH L 1 16 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MK2 . . . U 2 -16.786 -25.179 12.446 1 94.94 ? C1 MK2 500 J 1 HETATM 2 C C2 MK2 . . . U 2 -15.886 -26.217 12.397 1 95.29 ? C2 MK2 500 J 1 HETATM 3 C C3 MK2 . . . U 2 -16.922 -24.264 11.431 1 94.3 ? C3 MK2 500 J 1 HETATM 4 C C4 MK2 . . . U 2 -15.042 -26.434 11.333 1 96.13 ? C4 MK2 500 J 1 HETATM 5 C C5 MK2 . . . U 2 -15.59 -20.192 2.792 1 78.28 ? C5 MK2 500 J 1 HETATM 6 C C6 MK2 . . . U 2 -15.21 -19.521 1.655 1 77.8 ? C6 MK2 500 J 1 HETATM 7 C C7 MK2 . . . U 2 -15.892 -23.772 9.135 1 93.45 ? C7 MK2 500 J 1 HETATM 8 C C8 MK2 . . . U 2 -13.12 -23.25 4.618 1 83.2 ? C8 MK2 500 J 1 HETATM 9 C C9 MK2 . . . U 2 -14.802 -23.122 6.365 1 84.96 ? C9 MK2 500 J 1 HETATM 10 C C10 MK2 . . . U 2 -11.477 -24.963 5.166 1 81.32 ? C10 MK2 500 J 1 HETATM 11 C C11 MK2 . . . U 2 -16.089 -24.46 10.351 1 94.13 ? C11 MK2 500 J 1 HETATM 12 C C12 MK2 . . . U 2 -15.188 -25.509 10.327 1 95.71 ? C12 MK2 500 J 1 HETATM 13 C C13 MK2 . . . U 2 -14.62 -20.96 3.398 1 78.91 ? C13 MK2 500 J 1 HETATM 14 C C14 MK2 . . . U 2 -14.277 -22.695 5.157 1 83.66 ? C14 MK2 500 J 1 HETATM 15 C C15 MK2 . . . U 2 -12.619 -24.245 5.441 1 83.35 ? C15 MK2 500 J 1 HETATM 16 C C16 MK2 . . . U 2 -14.287 -24.124 7.166 1 87.35 ? C16 MK2 500 J 1 HETATM 17 C C17 MK2 . . . U 2 -14.903 -24.442 8.442 1 92.29 ? C17 MK2 500 J 1 HETATM 18 C C18 MK2 . . . U 2 -13.132 -24.705 6.671 1 83.97 ? C18 MK2 500 J 1 HETATM 19 C C19 MK2 . . . U 2 -13.091 -20.344 1.8 1 77.54 ? C19 MK2 500 J 1 HETATM 20 N N20 MK2 . . . U 2 -11.788 -20.415 1.283 1 76.71 ? N20 MK2 500 J 1 HETATM 21 N N21 MK2 . . . U 2 -12.329 -25.671 7.144 1 82.1 ? N21 MK2 500 J 1 HETATM 22 N N22 MK2 . . . U 2 -13.975 -19.583 1.143 1 77.17 ? N22 MK2 500 J 1 HETATM 23 N N23 MK2 . . . U 2 -11.355 -25.81 6.23 1 80.99 ? N23 MK2 500 J 1 HETATM 24 N N24 MK2 . . . U 2 -13.374 -21.044 2.913 1 78.04 ? N24 MK2 500 J 1 HETATM 25 N N25 MK2 . . . U 2 -15.005 -21.652 4.55 1 81.15 ? N25 MK2 500 J 1 HETATM 26 O O26 MK2 . . . U 2 -14.463 -25.517 9.166 1 95.21 ? O26 MK2 500 J 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #