data_3KC3
#
_model_server_result.job_id            WV09yVGM3kUe620AA35beg 
_model_server_result.datetime_utc      '2024-12-26 20:10:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kc3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":500}' 
#
_entry.id    3KC3 
#
_exptl.entry_id    3KC3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              342.354 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N~4~-[7-(1-benzofuran-2-yl)-1H-indazol-5-yl]pyrimidine-2,4-diamine 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3KC3 
_cell.length_a            139.351 
_cell.length_b            179.793 
_cell.length_c            214.376 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KC3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 software_defined_assembly 1 
PISA trimeric 3 software_defined_assembly 2 
PISA trimeric 3 software_defined_assembly 3 
PISA trimeric 3 software_defined_assembly 4 
PISA dodecameric 12 software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,F,H,M,R,S,X,BA,DA 1 1 
B,E,J,N,Q,U,AA 2 1 
C,I,L,O,T,W,Y,EA,FA 3 1 
D,G,K,P,V,Z,CA 4 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA 5 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
#
_chem_comp.formula           'C19 H14 N6 O' 
_chem_comp.formula_weight    342.354 
_chem_comp.id                MK2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N~4~-[7-(1-benzofuran-2-yl)-1H-indazol-5-yl]pyrimidine-2,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     N4-[7-(1-benzofuran-2-yl)-1H-indazol-5-yl]pyrimidine-2,4-diamine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 MK2 doub 237 n y 
C1 C3 MK2 sing 238 n y 
C1 H1 MK2 sing 239 n n 
C2 C4 MK2 sing 240 n y 
C2 H2 MK2 sing 241 n n 
C3 C11 MK2 doub 242 n y 
C3 H3 MK2 sing 243 n n 
C4 C12 MK2 doub 244 n y 
C4 H4 MK2 sing 245 n n 
C13 C5 MK2 doub 246 n y 
C5 C6 MK2 sing 247 n y 
C5 H5 MK2 sing 248 n n 
C6 N22 MK2 doub 249 n y 
C6 H6 MK2 sing 250 n n 
C11 C7 MK2 sing 251 n y 
C17 C7 MK2 doub 252 n y 
C7 H7 MK2 sing 253 n n 
C15 C8 MK2 doub 254 n y 
C8 C14 MK2 sing 255 n y 
C8 H8 MK2 sing 256 n n 
C16 C9 MK2 sing 257 n y 
C9 C14 MK2 doub 258 n y 
C9 H9 MK2 sing 259 n n 
N23 C10 MK2 doub 260 n y 
C10 C15 MK2 sing 261 n y 
C10 H10 MK2 sing 262 n n 
C12 C11 MK2 sing 263 n y 
C12 O26 MK2 sing 264 n y 
N25 C13 MK2 sing 265 n n 
C13 N24 MK2 sing 266 n y 
C14 N25 MK2 sing 267 n n 
C18 C15 MK2 sing 268 n y 
C17 C16 MK2 sing 269 n y 
C18 C16 MK2 doub 270 n y 
O26 C17 MK2 sing 271 n y 
N21 C18 MK2 sing 272 n y 
N24 C19 MK2 doub 273 n y 
N20 C19 MK2 sing 274 n n 
C19 N22 MK2 sing 275 n y 
N20 HN20 MK2 sing 276 n n 
N20 HN2A MK2 sing 277 n n 
N21 N23 MK2 sing 278 n y 
N25 HN25 MK2 sing 279 n n 
N21 HN21 MK2 sing 280 n n 
#
_atom_sites.entry_id                     3KC3 
_atom_sites.fract_transf_matrix[1][1]    0.007176 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005562 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004665 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 MK2 A 1 500 500 MK2 MK2 . 
N 2 MK2 B 1 500 500 MK2 MK2 . 
O 2 MK2 C 1 500 500 MK2 MK2 . 
P 2 MK2 D 1 500 500 MK2 MK2 . 
Q 2 MK2 E 1 500 500 MK2 MK2 . 
R 2 MK2 F 1 500 500 MK2 MK2 . 
S 2 MK2 H 1 500 500 MK2 MK2 . 
T 2 MK2 I 1 500 500 MK2 MK2 . 
U 2 MK2 J 1 500 500 MK2 MK2 . 
V 2 MK2 K 1 500 500 MK2 MK2 . 
W 2 MK2 L 1 500 500 MK2 MK2 . 
X 3 HOH A 1 5 5 HOH HOH . 
X 3 HOH A 2 9 9 HOH HOH . 
X 3 HOH A 3 15 15 HOH HOH . 
Y 3 HOH C 1 2 2 HOH HOH . 
Y 3 HOH C 2 4 4 HOH HOH . 
Y 3 HOH C 3 8 8 HOH HOH . 
Y 3 HOH C 4 12 12 HOH HOH . 
Y 3 HOH C 5 13 13 HOH HOH . 
Z 3 HOH D 1 17 17 HOH HOH . 
AA 3 HOH E 1 7 7 HOH HOH . 
AA 3 HOH E 2 14 14 HOH HOH . 
AA 3 HOH E 3 20 20 HOH HOH . 
BA 3 HOH F 1 6 6 HOH HOH . 
BA 3 HOH F 2 11 11 HOH HOH . 
BA 3 HOH F 3 18 18 HOH HOH . 
CA 3 HOH G 1 3 3 HOH HOH . 
DA 3 HOH H 1 1 1 HOH HOH . 
EA 3 HOH I 1 10 10 HOH HOH . 
EA 3 HOH I 2 19 19 HOH HOH . 
FA 3 HOH L 1 16 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MK2 . . . W 2 30.507 -14.639 -22.75 1 74.58 ? C1 MK2 500 L 1 
HETATM 2 C C2 MK2 . . . W 2 30.335 -15.974 -22.439 1 75.75 ? C2 MK2 500 L 1 
HETATM 3 C C3 MK2 . . . W 2 29.452 -13.794 -22.999 1 74.38 ? C3 MK2 500 L 1 
HETATM 4 C C4 MK2 . . . W 2 29.096 -16.572 -22.352 1 74.96 ? C4 MK2 500 L 1 
HETATM 5 C C5 MK2 . . . W 2 19.73 -11.451 -22.769 1 72.58 ? C5 MK2 500 L 1 
HETATM 6 C C6 MK2 . . . W 2 18.376 -11.25 -22.885 1 72.63 ? C6 MK2 500 L 1 
HETATM 7 C C7 MK2 . . . W 2 26.862 -13.888 -23.104 1 75.05 ? C7 MK2 500 L 1 
HETATM 8 C C8 MK2 . . . W 2 21.581 -15.253 -23.353 1 67.63 ? C8 MK2 500 L 1 
HETATM 9 C C9 MK2 . . . W 2 23.664 -13.996 -22.968 1 71.02 ? C9 MK2 500 L 1 
HETATM 10 C C10 MK2 . . . W 2 22.053 -17.583 -23.634 1 70.52 ? C10 MK2 500 L 1 
HETATM 11 C C11 MK2 . . . W 2 28.19 -14.367 -22.912 1 75.08 ? C11 MK2 500 L 1 
HETATM 12 C C12 MK2 . . . W 2 28.061 -15.706 -22.604 1 74.47 ? C12 MK2 500 L 1 
HETATM 13 C C13 MK2 . . . W 2 20.199 -12.69 -23.137 1 72.92 ? C13 MK2 500 L 1 
HETATM 14 C C14 MK2 . . . W 2 22.282 -14.078 -23.114 1 70.48 ? C14 MK2 500 L 1 
HETATM 15 C C15 MK2 . . . W 2 22.465 -16.294 -23.404 1 69.67 ? C15 MK2 500 L 1 
HETATM 16 C C16 MK2 . . . W 2 24.537 -15.072 -23.017 1 73.12 ? C16 MK2 500 L 1 
HETATM 17 C C17 MK2 . . . W 2 25.999 -14.949 -22.904 1 75.1 ? C17 MK2 500 L 1 
HETATM 18 C C18 MK2 . . . W 2 23.874 -16.272 -23.248 1 71.46 ? C18 MK2 500 L 1 
HETATM 19 C C19 MK2 . . . W 2 18.06 -13.362 -23.673 1 73.07 ? C19 MK2 500 L 1 
HETATM 20 N N20 MK2 . . . W 2 17.165 -14.339 -24.151 1 73.6 ? N20 MK2 500 L 1 
HETATM 21 N N21 MK2 . . . W 2 24.325 -17.53 -23.382 1 71.54 ? N21 MK2 500 L 1 
HETATM 22 N N22 MK2 . . . W 2 17.528 -12.18 -23.329 1 73.08 ? N22 MK2 500 L 1 
HETATM 23 N N23 MK2 . . . W 2 23.227 -18.287 -23.606 1 72.81 ? N23 MK2 500 L 1 
HETATM 24 N N24 MK2 . . . W 2 19.371 -13.653 -23.59 1 72.75 ? N24 MK2 500 L 1 
HETATM 25 N N25 MK2 . . . W 2 21.599 -12.856 -23.011 1 72.16 ? N25 MK2 500 L 1 
HETATM 26 O O26 MK2 . . . W 2 26.746 -16.056 -22.589 1 75.89 ? O26 MK2 500 L 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    67 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           26 
#