data_3KCQ # _model_server_result.job_id SOiP_J7IG7IA-ODZVhXkcw _model_server_result.datetime_utc '2024-12-22 06:27:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kcq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":801}' # _entry.id 3KCQ # _exptl.entry_id 3KCQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.44 _cell.angle_gamma 90 _cell.entry_id 3KCQ _cell.length_a 62.45 _cell.length_b 125.247 _cell.length_c 138.537 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KCQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 C,G,K 1 2 B,F,J 2 1 D,H,L 2 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.45 0 0 3 'crystal symmetry operation' 4_656 -x+3/2,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 80.541232 62.6235 137.913032 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3KCQ _atom_sites.fract_transf_matrix[1][1] 0.016013 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001525 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL A 1 801 801 GOL GOL . F 2 GOL B 1 801 801 GOL GOL . G 2 GOL C 1 801 801 GOL GOL . H 2 GOL D 1 801 801 GOL GOL . I 3 HOH A 1 212 2 HOH HOH . I 3 HOH A 2 213 4 HOH HOH . I 3 HOH A 3 214 8 HOH HOH . I 3 HOH A 4 215 10 HOH HOH . I 3 HOH A 5 216 12 HOH HOH . I 3 HOH A 6 217 14 HOH HOH . I 3 HOH A 7 218 19 HOH HOH . I 3 HOH A 8 219 22 HOH HOH . I 3 HOH A 9 220 23 HOH HOH . I 3 HOH A 10 221 29 HOH HOH . I 3 HOH A 11 222 34 HOH HOH . I 3 HOH A 12 223 37 HOH HOH . I 3 HOH A 13 224 41 HOH HOH . I 3 HOH A 14 225 43 HOH HOH . I 3 HOH A 15 226 45 HOH HOH . I 3 HOH A 16 227 49 HOH HOH . I 3 HOH A 17 228 52 HOH HOH . I 3 HOH A 18 229 54 HOH HOH . I 3 HOH A 19 230 57 HOH HOH . I 3 HOH A 20 231 58 HOH HOH . I 3 HOH A 21 232 59 HOH HOH . I 3 HOH A 22 233 64 HOH HOH . I 3 HOH A 23 234 66 HOH HOH . I 3 HOH A 24 235 67 HOH HOH . I 3 HOH A 25 236 70 HOH HOH . I 3 HOH A 26 237 75 HOH HOH . I 3 HOH A 27 238 79 HOH HOH . I 3 HOH A 28 239 86 HOH HOH . I 3 HOH A 29 240 87 HOH HOH . I 3 HOH A 30 241 89 HOH HOH . I 3 HOH A 31 242 94 HOH HOH . I 3 HOH A 32 243 96 HOH HOH . I 3 HOH A 33 244 100 HOH HOH . I 3 HOH A 34 245 103 HOH HOH . I 3 HOH A 35 246 106 HOH HOH . I 3 HOH A 36 247 108 HOH HOH . I 3 HOH A 37 248 114 HOH HOH . I 3 HOH A 38 249 115 HOH HOH . I 3 HOH A 39 250 126 HOH HOH . I 3 HOH A 40 251 127 HOH HOH . I 3 HOH A 41 252 132 HOH HOH . I 3 HOH A 42 253 138 HOH HOH . I 3 HOH A 43 254 147 HOH HOH . I 3 HOH A 44 255 152 HOH HOH . I 3 HOH A 45 256 158 HOH HOH . I 3 HOH A 46 257 162 HOH HOH . I 3 HOH A 47 258 163 HOH HOH . I 3 HOH A 48 259 172 HOH HOH . I 3 HOH A 49 260 173 HOH HOH . I 3 HOH A 50 261 176 HOH HOH . I 3 HOH A 51 262 178 HOH HOH . I 3 HOH A 52 263 182 HOH HOH . I 3 HOH A 53 264 186 HOH HOH . I 3 HOH A 54 265 198 HOH HOH . I 3 HOH A 55 266 199 HOH HOH . I 3 HOH A 56 267 201 HOH HOH . J 3 HOH B 1 212 11 HOH HOH . J 3 HOH B 2 213 15 HOH HOH . J 3 HOH B 3 214 20 HOH HOH . J 3 HOH B 4 215 24 HOH HOH . J 3 HOH B 5 216 25 HOH HOH . J 3 HOH B 6 217 26 HOH HOH . J 3 HOH B 7 218 32 HOH HOH . J 3 HOH B 8 219 36 HOH HOH . J 3 HOH B 9 220 39 HOH HOH . J 3 HOH B 10 221 47 HOH HOH . J 3 HOH B 11 222 51 HOH HOH . J 3 HOH B 12 223 77 HOH HOH . J 3 HOH B 13 224 78 HOH HOH . J 3 HOH B 14 225 80 HOH HOH . J 3 HOH B 15 226 81 HOH HOH . J 3 HOH B 16 227 83 HOH HOH . J 3 HOH B 17 228 88 HOH HOH . J 3 HOH B 18 229 93 HOH HOH . J 3 HOH B 19 230 97 HOH HOH . J 3 HOH B 20 231 98 HOH HOH . J 3 HOH B 21 232 107 HOH HOH . J 3 HOH B 22 233 116 HOH HOH . J 3 HOH B 23 234 118 HOH HOH . J 3 HOH B 24 235 122 HOH HOH . J 3 HOH B 25 236 124 HOH HOH . J 3 HOH B 26 237 130 HOH HOH . J 3 HOH B 27 238 139 HOH HOH . J 3 HOH B 28 239 140 HOH HOH . J 3 HOH B 29 240 143 HOH HOH . J 3 HOH B 30 241 150 HOH HOH . J 3 HOH B 31 242 154 HOH HOH . J 3 HOH B 32 243 156 HOH HOH . J 3 HOH B 33 244 157 HOH HOH . J 3 HOH B 34 245 164 HOH HOH . J 3 HOH B 35 246 166 HOH HOH . J 3 HOH B 36 247 168 HOH HOH . J 3 HOH B 37 248 169 HOH HOH . J 3 HOH B 38 249 175 HOH HOH . J 3 HOH B 39 250 180 HOH HOH . J 3 HOH B 40 251 188 HOH HOH . J 3 HOH B 41 252 202 HOH HOH . J 3 HOH B 42 253 203 HOH HOH . K 3 HOH C 1 212 1 HOH HOH . K 3 HOH C 2 213 3 HOH HOH . K 3 HOH C 3 214 7 HOH HOH . K 3 HOH C 4 215 9 HOH HOH . K 3 HOH C 5 216 16 HOH HOH . K 3 HOH C 6 217 17 HOH HOH . K 3 HOH C 7 218 18 HOH HOH . K 3 HOH C 8 219 28 HOH HOH . K 3 HOH C 9 220 30 HOH HOH . K 3 HOH C 10 221 33 HOH HOH . K 3 HOH C 11 222 38 HOH HOH . K 3 HOH C 12 223 40 HOH HOH . K 3 HOH C 13 224 42 HOH HOH . K 3 HOH C 14 225 44 HOH HOH . K 3 HOH C 15 226 48 HOH HOH . K 3 HOH C 16 227 50 HOH HOH . K 3 HOH C 17 228 53 HOH HOH . K 3 HOH C 18 229 55 HOH HOH . K 3 HOH C 19 230 56 HOH HOH . K 3 HOH C 20 231 60 HOH HOH . K 3 HOH C 21 232 63 HOH HOH . K 3 HOH C 22 233 68 HOH HOH . K 3 HOH C 23 234 69 HOH HOH . K 3 HOH C 24 235 73 HOH HOH . K 3 HOH C 25 236 76 HOH HOH . K 3 HOH C 26 237 84 HOH HOH . K 3 HOH C 27 238 91 HOH HOH . K 3 HOH C 28 239 92 HOH HOH . K 3 HOH C 29 240 95 HOH HOH . K 3 HOH C 30 241 99 HOH HOH . K 3 HOH C 31 242 101 HOH HOH . K 3 HOH C 32 243 104 HOH HOH . K 3 HOH C 33 244 105 HOH HOH . K 3 HOH C 34 245 109 HOH HOH . K 3 HOH C 35 246 110 HOH HOH . K 3 HOH C 36 247 112 HOH HOH . K 3 HOH C 37 248 113 HOH HOH . K 3 HOH C 38 249 117 HOH HOH . K 3 HOH C 39 250 119 HOH HOH . K 3 HOH C 40 251 121 HOH HOH . K 3 HOH C 41 252 125 HOH HOH . K 3 HOH C 42 253 133 HOH HOH . K 3 HOH C 43 254 135 HOH HOH . K 3 HOH C 44 255 136 HOH HOH . K 3 HOH C 45 256 137 HOH HOH . K 3 HOH C 46 257 141 HOH HOH . K 3 HOH C 47 258 144 HOH HOH . K 3 HOH C 48 259 145 HOH HOH . K 3 HOH C 49 260 151 HOH HOH . K 3 HOH C 50 261 153 HOH HOH . K 3 HOH C 51 262 161 HOH HOH . K 3 HOH C 52 263 167 HOH HOH . K 3 HOH C 53 264 170 HOH HOH . K 3 HOH C 54 265 171 HOH HOH . K 3 HOH C 55 266 174 HOH HOH . K 3 HOH C 56 267 177 HOH HOH . K 3 HOH C 57 268 179 HOH HOH . K 3 HOH C 58 269 181 HOH HOH . K 3 HOH C 59 270 183 HOH HOH . K 3 HOH C 60 271 185 HOH HOH . K 3 HOH C 61 272 189 HOH HOH . K 3 HOH C 62 273 191 HOH HOH . K 3 HOH C 63 274 194 HOH HOH . K 3 HOH C 64 275 197 HOH HOH . K 3 HOH C 65 276 200 HOH HOH . K 3 HOH C 66 277 204 HOH HOH . K 3 HOH C 67 278 205 HOH HOH . L 3 HOH D 1 212 5 HOH HOH . L 3 HOH D 2 213 6 HOH HOH . L 3 HOH D 3 214 13 HOH HOH . L 3 HOH D 4 215 21 HOH HOH . L 3 HOH D 5 216 27 HOH HOH . L 3 HOH D 6 217 31 HOH HOH . L 3 HOH D 7 218 35 HOH HOH . L 3 HOH D 8 219 46 HOH HOH . L 3 HOH D 9 220 61 HOH HOH . L 3 HOH D 10 221 62 HOH HOH . L 3 HOH D 11 222 65 HOH HOH . L 3 HOH D 12 223 71 HOH HOH . L 3 HOH D 13 224 72 HOH HOH . L 3 HOH D 14 225 74 HOH HOH . L 3 HOH D 15 226 82 HOH HOH . L 3 HOH D 16 227 85 HOH HOH . L 3 HOH D 17 228 90 HOH HOH . L 3 HOH D 18 229 102 HOH HOH . L 3 HOH D 19 230 111 HOH HOH . L 3 HOH D 20 231 120 HOH HOH . L 3 HOH D 21 232 123 HOH HOH . L 3 HOH D 22 233 128 HOH HOH . L 3 HOH D 23 234 129 HOH HOH . L 3 HOH D 24 235 131 HOH HOH . L 3 HOH D 25 236 134 HOH HOH . L 3 HOH D 26 237 142 HOH HOH . L 3 HOH D 27 238 146 HOH HOH . L 3 HOH D 28 239 148 HOH HOH . L 3 HOH D 29 240 149 HOH HOH . L 3 HOH D 30 241 155 HOH HOH . L 3 HOH D 31 242 159 HOH HOH . L 3 HOH D 32 243 160 HOH HOH . L 3 HOH D 33 244 165 HOH HOH . L 3 HOH D 34 245 184 HOH HOH . L 3 HOH D 35 246 187 HOH HOH . L 3 HOH D 36 247 190 HOH HOH . L 3 HOH D 37 248 192 HOH HOH . L 3 HOH D 38 249 193 HOH HOH . L 3 HOH D 39 250 195 HOH HOH . L 3 HOH D 40 251 196 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 2 41.49 26.61 60.629 1 20.29 ? C1 GOL 801 D 1 HETATM 2 O O1 GOL . . . H 2 40.127 26.604 60.288 1 21.57 ? O1 GOL 801 D 1 HETATM 3 C C2 GOL . . . H 2 42.277 26.485 59.339 1 20.39 ? C2 GOL 801 D 1 HETATM 4 O O2 GOL . . . H 2 41.824 27.424 58.382 1 19.94 ? O2 GOL 801 D 1 HETATM 5 C C3 GOL . . . H 2 42.112 25.082 58.762 1 19.17 ? C3 GOL 801 D 1 HETATM 6 O O3 GOL . . . H 2 43.124 24.869 57.806 1 16.68 ? O3 GOL 801 D 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 369 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 6 #