data_3KCU # _model_server_result.job_id Gjegklmr-mIZQ6rwMEaaUw _model_server_result.datetime_utc '2025-07-31 03:11:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kcu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":286}' # _entry.id 3KCU # _exptl.entry_id 3KCU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 452.493 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(6-(2-CYCLOHEXYLETHOXY)-TETRAHYDRO-4,5-DIHYDROXY-2(HYDROXYMETHYL)-2H-PYRAN-3-YLOXY)-TETRAHYDRO-6(HYDROXYMETHYL)-2H-PY RAN-3,4,5-TRIOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KCU _cell.length_a 101.378 _cell.length_b 107.934 _cell.length_c 163.128 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KCU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H36 O11' _chem_comp.formula_weight 452.493 _chem_comp.id MA5 _chem_comp.mon_nstd_flag . _chem_comp.name '2-(6-(2-CYCLOHEXYLETHOXY)-TETRAHYDRO-4,5-DIHYDROXY-2(HYDROXYMETHYL)-2H-PYRAN-3-YLOXY)-TETRAHYDRO-6(HYDROXYMETHYL)-2H-PY RAN-3,4,5-TRIOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CYCLOHEXYLETHYL-BETA-D-MALTOSIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C42 C32 MA5 sing 218 n n C42 C52 MA5 sing 219 n n C42 H421 MA5 sing 220 n n C42 H422 MA5 sing 221 n n C32 C22 MA5 sing 222 n n C32 H321 MA5 sing 223 n n C32 H322 MA5 sing 224 n n C22 C12 MA5 sing 225 n n C22 H221 MA5 sing 226 n n C22 H222 MA5 sing 227 n n C12 C62 MA5 sing 228 n n C12 H121 MA5 sing 229 n n C12 H122 MA5 sing 230 n n C62 C52 MA5 sing 231 n n C62 H621 MA5 sing 232 n n C62 H622 MA5 sing 233 n n C52 C61 MA5 sing 234 n n C52 H52 MA5 sing 235 n n C61 C11 MA5 sing 236 n n C61 H611 MA5 sing 237 n n C61 H612 MA5 sing 238 n n C11 O10 MA5 sing 239 n n C11 H111 MA5 sing 240 n n C11 H112 MA5 sing 241 n n O10 C10 MA5 sing 242 n n C10 C20 MA5 sing 243 n n C10 O50 MA5 sing 244 n n C10 H10 MA5 sing 245 n n C20 O20 MA5 sing 246 n n C20 C30 MA5 sing 247 n n C20 H20 MA5 sing 248 n n O20 H3 MA5 sing 249 n n C30 O30 MA5 sing 250 n n C30 C40 MA5 sing 251 n n C30 H30 MA5 sing 252 n n O30 H2 MA5 sing 253 n n O50 C50 MA5 sing 254 n n C50 C60 MA5 sing 255 n n C50 C40 MA5 sing 256 n n C50 H50 MA5 sing 257 n n C60 O60 MA5 sing 258 n n C60 H601 MA5 sing 259 n n C60 H602 MA5 sing 260 n n O60 H60 MA5 sing 261 n n C40 O1 MA5 sing 262 n n C40 H40 MA5 sing 263 n n O1 C1 MA5 sing 264 n n C1 O5 MA5 sing 265 n n C1 C2 MA5 sing 266 n n C1 H1 MA5 sing 267 n n O5 C5 MA5 sing 268 n n C5 C6 MA5 sing 269 n n C5 C4 MA5 sing 270 n n C5 H5 MA5 sing 271 n n C6 O6 MA5 sing 272 n n C6 H61 MA5 sing 273 n n C6 H62 MA5 sing 274 n n O6 HO6 MA5 sing 275 n n C4 O4 MA5 sing 276 n n C4 C3 MA5 sing 277 n n C4 H7 MA5 sing 278 n n O4 HO4 MA5 sing 279 n n C3 O3 MA5 sing 280 n n C3 C2 MA5 sing 281 n n C3 H6 MA5 sing 282 n n O3 HO3 MA5 sing 283 n n C2 O2 MA5 sing 284 n n C2 H4 MA5 sing 285 n n O2 HO2 MA5 sing 286 n n # _atom_sites.entry_id 3KCU _atom_sites.fract_transf_matrix[1][1] 0.009864 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009265 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 MA5 A 1 286 1 MA5 MA5 . G 3 HOH A 1 287 2 HOH HOH . G 3 HOH A 2 288 5 HOH HOH . G 3 HOH A 3 289 9 HOH HOH . G 3 HOH A 4 290 17 HOH HOH . G 3 HOH A 5 291 20 HOH HOH . G 3 HOH A 6 292 24 HOH HOH . G 3 HOH A 7 293 28 HOH HOH . G 3 HOH A 8 294 29 HOH HOH . G 3 HOH A 9 295 36 HOH HOH . G 3 HOH A 10 296 37 HOH HOH . G 3 HOH A 11 297 40 HOH HOH . G 3 HOH A 12 298 43 HOH HOH . G 3 HOH A 13 299 46 HOH HOH . G 3 HOH A 14 300 48 HOH HOH . G 3 HOH A 15 301 51 HOH HOH . G 3 HOH A 16 302 53 HOH HOH . G 3 HOH A 17 303 54 HOH HOH . G 3 HOH A 18 304 58 HOH HOH . G 3 HOH A 19 305 63 HOH HOH . G 3 HOH A 20 306 65 HOH HOH . G 3 HOH A 21 307 77 HOH HOH . G 3 HOH A 22 308 80 HOH HOH . G 3 HOH A 23 309 81 HOH HOH . G 3 HOH A 24 310 83 HOH HOH . G 3 HOH A 25 311 86 HOH HOH . G 3 HOH A 26 312 89 HOH HOH . G 3 HOH A 27 313 90 HOH HOH . G 3 HOH A 28 314 93 HOH HOH . G 3 HOH A 29 315 94 HOH HOH . G 3 HOH A 30 316 95 HOH HOH . G 3 HOH A 31 317 96 HOH HOH . G 3 HOH A 32 318 100 HOH HOH . G 3 HOH A 33 319 104 HOH HOH . G 3 HOH A 34 320 107 HOH HOH . G 3 HOH A 35 321 112 HOH HOH . G 3 HOH A 36 322 115 HOH HOH . G 3 HOH A 37 324 122 HOH HOH . H 3 HOH B 1 286 3 HOH HOH . H 3 HOH B 2 287 4 HOH HOH . H 3 HOH B 3 288 6 HOH HOH . H 3 HOH B 4 289 11 HOH HOH . H 3 HOH B 5 290 14 HOH HOH . H 3 HOH B 6 291 15 HOH HOH . H 3 HOH B 7 292 27 HOH HOH . H 3 HOH B 8 293 34 HOH HOH . H 3 HOH B 9 294 39 HOH HOH . H 3 HOH B 10 295 42 HOH HOH . H 3 HOH B 11 296 49 HOH HOH . H 3 HOH B 12 297 50 HOH HOH . H 3 HOH B 13 298 52 HOH HOH . H 3 HOH B 14 299 55 HOH HOH . H 3 HOH B 15 300 61 HOH HOH . H 3 HOH B 16 301 66 HOH HOH . H 3 HOH B 17 302 69 HOH HOH . H 3 HOH B 18 303 72 HOH HOH . H 3 HOH B 19 304 78 HOH HOH . H 3 HOH B 20 305 87 HOH HOH . H 3 HOH B 21 306 88 HOH HOH . H 3 HOH B 22 307 91 HOH HOH . H 3 HOH B 23 308 111 HOH HOH . H 3 HOH B 24 309 116 HOH HOH . H 3 HOH B 25 310 118 HOH HOH . H 3 HOH B 26 311 119 HOH HOH . H 3 HOH B 27 323 120 HOH HOH . I 3 HOH C 1 286 10 HOH HOH . I 3 HOH C 2 287 12 HOH HOH . I 3 HOH C 3 288 16 HOH HOH . I 3 HOH C 4 289 22 HOH HOH . I 3 HOH C 5 290 32 HOH HOH . I 3 HOH C 6 291 47 HOH HOH . I 3 HOH C 7 292 57 HOH HOH . I 3 HOH C 8 293 60 HOH HOH . I 3 HOH C 9 294 67 HOH HOH . I 3 HOH C 10 295 68 HOH HOH . I 3 HOH C 11 296 71 HOH HOH . I 3 HOH C 12 297 74 HOH HOH . I 3 HOH C 13 298 76 HOH HOH . I 3 HOH C 14 299 79 HOH HOH . I 3 HOH C 15 300 82 HOH HOH . I 3 HOH C 16 301 84 HOH HOH . I 3 HOH C 17 302 92 HOH HOH . I 3 HOH C 18 303 97 HOH HOH . I 3 HOH C 19 304 98 HOH HOH . I 3 HOH C 20 305 110 HOH HOH . I 3 HOH C 21 306 113 HOH HOH . I 3 HOH C 22 307 114 HOH HOH . J 3 HOH D 1 286 38 HOH HOH . J 3 HOH D 2 287 44 HOH HOH . J 3 HOH D 3 288 45 HOH HOH . J 3 HOH D 4 289 56 HOH HOH . J 3 HOH D 5 290 62 HOH HOH . J 3 HOH D 6 291 70 HOH HOH . K 3 HOH E 1 286 18 HOH HOH . K 3 HOH E 2 287 41 HOH HOH . K 3 HOH E 3 288 59 HOH HOH . K 3 HOH E 4 289 73 HOH HOH . K 3 HOH E 5 290 75 HOH HOH . K 3 HOH E 6 291 85 HOH HOH . K 3 HOH E 7 292 99 HOH HOH . K 3 HOH E 8 293 102 HOH HOH . K 3 HOH E 9 294 106 HOH HOH . K 3 HOH E 10 295 109 HOH HOH . K 3 HOH E 11 296 117 HOH HOH . K 3 HOH E 12 297 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C42 MA5 . . . F 2 49.025 31.148 139.047 1 74.59 ? C42 MA5 286 A 1 HETATM 2 C C32 MA5 . . . F 2 47.762 30.422 138.602 1 76.31 ? C32 MA5 286 A 1 HETATM 3 C C22 MA5 . . . F 2 46.797 31.405 137.97 1 80.38 ? C22 MA5 286 A 1 HETATM 4 C C12 MA5 . . . F 2 47.468 31.964 136.725 1 86.4 ? C12 MA5 286 A 1 HETATM 5 C C62 MA5 . . . F 2 48.74 32.732 137.076 1 82.92 ? C62 MA5 286 A 1 HETATM 6 C C52 MA5 . . . F 2 49.715 31.952 137.949 1 80.52 ? C52 MA5 286 A 1 HETATM 7 C C61 MA5 . . . F 2 50.622 32.969 138.631 1 81.77 ? C61 MA5 286 A 1 HETATM 8 C C11 MA5 . . . F 2 51.6 33.599 137.643 1 75.21 ? C11 MA5 286 A 1 HETATM 9 O O10 MA5 . . . F 2 52.366 32.583 136.992 1 72.27 ? O10 MA5 286 A 1 HETATM 10 C C10 MA5 . . . F 2 53.758 32.907 137.013 1 72.01 ? C10 MA5 286 A 1 HETATM 11 C C20 MA5 . . . F 2 54.559 31.87 136.228 1 68.7 ? C20 MA5 286 A 1 HETATM 12 O O20 MA5 . . . F 2 54.429 30.577 136.835 1 63.46 ? O20 MA5 286 A 1 HETATM 13 C C30 MA5 . . . F 2 56.031 32.282 136.194 1 68.03 ? C30 MA5 286 A 1 HETATM 14 O O30 MA5 . . . F 2 56.807 31.295 135.493 1 61.22 ? O30 MA5 286 A 1 HETATM 15 O O50 MA5 . . . F 2 53.916 34.203 136.43 1 75.85 ? O50 MA5 286 A 1 HETATM 16 C C50 MA5 . . . F 2 55.261 34.668 136.282 1 70.68 ? C50 MA5 286 A 1 HETATM 17 C C60 MA5 . . . F 2 55.224 35.992 135.525 1 76.65 ? C60 MA5 286 A 1 HETATM 18 O O60 MA5 . . . F 2 54.876 35.767 134.147 1 78.65 ? O60 MA5 286 A 1 HETATM 19 C C40 MA5 . . . F 2 56.139 33.659 135.55 1 69.45 ? C40 MA5 286 A 1 HETATM 20 O O1 MA5 . . . F 2 57.478 34.146 135.593 1 77.78 ? O1 MA5 286 A 1 HETATM 21 C C1 MA5 . . . F 2 58.332 33.637 134.562 1 83.24 ? C1 MA5 286 A 1 HETATM 22 O O5 MA5 . . . F 2 58.014 34.323 133.352 1 87.5 ? O5 MA5 286 A 1 HETATM 23 C C5 MA5 . . . F 2 58.15 35.744 133.457 1 88.95 ? C5 MA5 286 A 1 HETATM 24 C C6 MA5 . . . F 2 57.762 36.387 132.132 1 92.42 ? C6 MA5 286 A 1 HETATM 25 O O6 MA5 . . . F 2 57.079 37.617 132.402 1 98.45 ? O6 MA5 286 A 1 HETATM 26 C C4 MA5 . . . F 2 59.567 36.137 133.867 1 87.79 ? C4 MA5 286 A 1 HETATM 27 O O4 MA5 . . . F 2 59.631 37.552 134.065 1 88.15 ? O4 MA5 286 A 1 HETATM 28 C C3 MA5 . . . F 2 59.939 35.428 135.162 1 84.72 ? C3 MA5 286 A 1 HETATM 29 O O3 MA5 . . . F 2 61.272 35.771 135.557 1 79.74 ? O3 MA5 286 A 1 HETATM 30 C C2 MA5 . . . F 2 59.784 33.93 134.931 1 82.33 ? C2 MA5 286 A 1 HETATM 31 O O2 MA5 . . . F 2 60.173 33.184 136.093 1 79.7 ? O2 MA5 286 A 1 # _model_server_stats.io_time_ms 115 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 31 #