data_3KCX # _model_server_result.job_id eGccTfNrkrIJv7b3rL5Qaw _model_server_result.datetime_utc '2024-11-05 00:18:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kcx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":351}' # _entry.id 3KCX # _exptl.entry_id 3KCX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KCX _cell.length_a 86.746 _cell.length_b 86.746 _cell.length_c 146.525 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KCX _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_465 y-1,x+1,-z 0 1 0 1 0 0 0 0 -1 -86.746 86.746 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 H OAA CQL . A CQL 1 1_555 B FE FE2 . A FE2 1350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc2 H NAH CQL . A CQL 1 1_555 B FE FE2 . A FE2 1350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc3 A NE2 HIS 185 A HIS 199 1_555 B FE FE2 . A FE2 1350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc4 A OD2 ASP 187 A ASP 201 1_555 B FE FE2 . A FE2 1350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc5 A NE2 HIS 265 A HIS 279 1_555 B FE FE2 . A FE2 1350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 148 n n C1 C2 GOL sing 149 n n C1 H11 GOL sing 150 n n C1 H12 GOL sing 151 n n O1 HO1 GOL sing 152 n n C2 O2 GOL sing 153 n n C2 C3 GOL sing 154 n n C2 H2 GOL sing 155 n n O2 HO2 GOL sing 156 n n C3 O3 GOL sing 157 n n C3 H31 GOL sing 158 n n C3 H32 GOL sing 159 n n O3 HO3 GOL sing 160 n n # _atom_sites.entry_id 3KCX _atom_sites.fract_transf_matrix[1][1] 0.011528 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011528 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006825 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE2 A 1 1350 1350 FE2 FE2 . C 3 SO4 A 1 1352 1352 SO4 SO4 . D 3 SO4 A 1 1353 1353 SO4 SO4 . E 4 GOL A 1 350 310 GOL GOL . F 4 GOL A 1 351 311 GOL GOL . G 4 GOL A 1 352 312 GOL GOL . H 5 CQL A 1 1 1 CQL CQL . I 6 HOH A 1 2 2 HOH HOH . I 6 HOH A 2 3 3 HOH HOH . I 6 HOH A 3 4 4 HOH HOH . I 6 HOH A 4 5 5 HOH HOH . I 6 HOH A 5 6 6 HOH HOH . I 6 HOH A 6 7 7 HOH HOH . I 6 HOH A 7 8 8 HOH HOH . I 6 HOH A 8 9 9 HOH HOH . I 6 HOH A 9 10 10 HOH HOH . I 6 HOH A 10 11 11 HOH HOH . I 6 HOH A 11 12 12 HOH HOH . I 6 HOH A 12 13 13 HOH HOH . I 6 HOH A 13 14 14 HOH HOH . I 6 HOH A 14 353 1 HOH HOH . I 6 HOH A 15 354 15 HOH HOH . I 6 HOH A 16 355 16 HOH HOH . I 6 HOH A 17 356 17 HOH HOH . I 6 HOH A 18 357 18 HOH HOH . I 6 HOH A 19 358 19 HOH HOH . I 6 HOH A 20 359 20 HOH HOH . I 6 HOH A 21 360 21 HOH HOH . I 6 HOH A 22 361 22 HOH HOH . I 6 HOH A 23 362 23 HOH HOH . I 6 HOH A 24 363 24 HOH HOH . I 6 HOH A 25 364 25 HOH HOH . I 6 HOH A 26 365 26 HOH HOH . I 6 HOH A 27 366 27 HOH HOH . I 6 HOH A 28 367 28 HOH HOH . I 6 HOH A 29 368 29 HOH HOH . I 6 HOH A 30 369 30 HOH HOH . I 6 HOH A 31 370 31 HOH HOH . I 6 HOH A 32 371 32 HOH HOH . I 6 HOH A 33 372 33 HOH HOH . I 6 HOH A 34 373 34 HOH HOH . I 6 HOH A 35 374 35 HOH HOH . I 6 HOH A 36 375 36 HOH HOH . I 6 HOH A 37 376 37 HOH HOH . I 6 HOH A 38 377 38 HOH HOH . I 6 HOH A 39 378 39 HOH HOH . I 6 HOH A 40 379 40 HOH HOH . I 6 HOH A 41 380 41 HOH HOH . I 6 HOH A 42 381 42 HOH HOH . I 6 HOH A 43 382 43 HOH HOH . I 6 HOH A 44 383 44 HOH HOH . I 6 HOH A 45 384 45 HOH HOH . I 6 HOH A 46 385 46 HOH HOH . I 6 HOH A 47 386 47 HOH HOH . I 6 HOH A 48 387 48 HOH HOH . I 6 HOH A 49 388 49 HOH HOH . I 6 HOH A 50 389 50 HOH HOH . I 6 HOH A 51 390 51 HOH HOH . I 6 HOH A 52 391 52 HOH HOH . I 6 HOH A 53 392 53 HOH HOH . I 6 HOH A 54 393 54 HOH HOH . I 6 HOH A 55 394 55 HOH HOH . I 6 HOH A 56 395 56 HOH HOH . I 6 HOH A 57 396 57 HOH HOH . I 6 HOH A 58 397 58 HOH HOH . I 6 HOH A 59 398 59 HOH HOH . I 6 HOH A 60 399 60 HOH HOH . I 6 HOH A 61 400 61 HOH HOH . I 6 HOH A 62 401 62 HOH HOH . I 6 HOH A 63 402 63 HOH HOH . I 6 HOH A 64 403 64 HOH HOH . I 6 HOH A 65 404 65 HOH HOH . I 6 HOH A 66 405 66 HOH HOH . I 6 HOH A 67 406 67 HOH HOH . I 6 HOH A 68 407 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 -33.222 43.13 11.935 1 80.2 ? C1 GOL 351 A 1 HETATM 2 O O1 GOL . . . F 4 -34.534 43.391 12.37 1 80.46 ? O1 GOL 351 A 1 HETATM 3 C C2 GOL . . . F 4 -32.623 44.462 11.524 1 81.16 ? C2 GOL 351 A 1 HETATM 4 O O2 GOL . . . F 4 -33.638 45.442 11.657 1 80.56 ? O2 GOL 351 A 1 HETATM 5 C C3 GOL . . . F 4 -31.432 44.767 12.431 1 81.24 ? C3 GOL 351 A 1 HETATM 6 O O3 GOL . . . F 4 -30.214 44.679 11.718 1 80.19 ? O3 GOL 351 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #