data_3KDD
#
_model_server_result.job_id            cQDZdQwC6lt-DUunqN3n2g 
_model_server_result.datetime_utc      '2025-01-11 13:52:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kdd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":101}' 
#
_entry.id    3KDD 
#
_exptl.entry_id    3KDD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3KDD 
_cell.length_a            58.408 
_cell.length_b            85.916 
_cell.length_c            46.438 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KDD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3KDD 
_atom_sites.fract_transf_matrix[1][1]    0.017121 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011639 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021534 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 JZQ A 1 100 1 JZQ JZQ . 
D 3 GOL B 1 100 1 GOL GOL . 
E 3 GOL B 1 101 2 GOL GOL . 
F 4 HOH A 1 101 101 HOH HOH . 
F 4 HOH A 2 102 6 HOH HOH . 
F 4 HOH A 3 103 7 HOH HOH . 
F 4 HOH A 4 104 104 HOH HOH . 
F 4 HOH A 5 105 9 HOH HOH . 
F 4 HOH A 6 106 11 HOH HOH . 
F 4 HOH A 7 107 107 HOH HOH . 
F 4 HOH A 8 108 14 HOH HOH . 
F 4 HOH A 9 109 15 HOH HOH . 
F 4 HOH A 10 110 18 HOH HOH . 
F 4 HOH A 11 111 21 HOH HOH . 
F 4 HOH A 12 112 23 HOH HOH . 
F 4 HOH A 13 113 27 HOH HOH . 
F 4 HOH A 14 114 30 HOH HOH . 
F 4 HOH A 15 115 115 HOH HOH . 
F 4 HOH A 16 116 31 HOH HOH . 
F 4 HOH A 17 117 35 HOH HOH . 
F 4 HOH A 18 118 118 HOH HOH . 
F 4 HOH A 19 119 36 HOH HOH . 
F 4 HOH A 20 120 120 HOH HOH . 
F 4 HOH A 21 121 121 HOH HOH . 
F 4 HOH A 22 122 37 HOH HOH . 
F 4 HOH A 23 123 123 HOH HOH . 
F 4 HOH A 24 124 39 HOH HOH . 
F 4 HOH A 25 125 125 HOH HOH . 
F 4 HOH A 26 126 126 HOH HOH . 
F 4 HOH A 27 127 127 HOH HOH . 
F 4 HOH A 28 128 128 HOH HOH . 
F 4 HOH A 29 129 103 HOH HOH . 
F 4 HOH A 30 130 130 HOH HOH . 
F 4 HOH A 31 131 131 HOH HOH . 
F 4 HOH A 32 132 132 HOH HOH . 
F 4 HOH A 33 133 133 HOH HOH . 
F 4 HOH A 34 134 40 HOH HOH . 
F 4 HOH A 35 135 135 HOH HOH . 
F 4 HOH A 36 136 136 HOH HOH . 
F 4 HOH A 37 137 137 HOH HOH . 
F 4 HOH A 38 138 138 HOH HOH . 
F 4 HOH A 39 139 42 HOH HOH . 
F 4 HOH A 40 140 43 HOH HOH . 
F 4 HOH A 41 141 44 HOH HOH . 
F 4 HOH A 42 142 142 HOH HOH . 
F 4 HOH A 43 143 143 HOH HOH . 
F 4 HOH A 44 144 48 HOH HOH . 
F 4 HOH A 45 145 52 HOH HOH . 
F 4 HOH A 46 146 146 HOH HOH . 
F 4 HOH A 47 147 147 HOH HOH . 
F 4 HOH A 48 148 55 HOH HOH . 
F 4 HOH A 49 149 149 HOH HOH . 
F 4 HOH A 50 150 57 HOH HOH . 
F 4 HOH A 51 151 59 HOH HOH . 
F 4 HOH A 52 152 65 HOH HOH . 
F 4 HOH A 53 153 69 HOH HOH . 
F 4 HOH A 54 154 75 HOH HOH . 
F 4 HOH A 55 155 78 HOH HOH . 
F 4 HOH A 56 156 81 HOH HOH . 
F 4 HOH A 57 157 157 HOH HOH . 
F 4 HOH A 58 158 88 HOH HOH . 
F 4 HOH A 59 159 159 HOH HOH . 
F 4 HOH A 60 160 160 HOH HOH . 
F 4 HOH A 61 161 161 HOH HOH . 
F 4 HOH A 62 162 162 HOH HOH . 
F 4 HOH A 63 163 163 HOH HOH . 
F 4 HOH A 64 164 164 HOH HOH . 
F 4 HOH A 65 165 89 HOH HOH . 
F 4 HOH A 66 166 166 HOH HOH . 
F 4 HOH A 67 167 90 HOH HOH . 
F 4 HOH A 68 168 91 HOH HOH . 
F 4 HOH A 69 169 93 HOH HOH . 
F 4 HOH A 70 170 170 HOH HOH . 
F 4 HOH A 71 171 95 HOH HOH . 
F 4 HOH A 72 172 96 HOH HOH . 
F 4 HOH A 73 173 97 HOH HOH . 
F 4 HOH A 74 174 174 HOH HOH . 
F 4 HOH A 75 175 99 HOH HOH . 
F 4 HOH A 76 176 144 HOH HOH . 
F 4 HOH A 77 177 77 HOH HOH . 
F 4 HOH A 78 178 178 HOH HOH . 
F 4 HOH A 79 179 179 HOH HOH . 
F 4 HOH A 80 180 4 HOH HOH . 
F 4 HOH A 81 184 184 HOH HOH . 
F 4 HOH A 82 186 186 HOH HOH . 
F 4 HOH A 83 188 188 HOH HOH . 
F 4 HOH A 84 192 192 HOH HOH . 
F 4 HOH A 85 193 193 HOH HOH . 
F 4 HOH A 86 195 195 HOH HOH . 
F 4 HOH A 87 196 196 HOH HOH . 
F 4 HOH A 88 197 197 HOH HOH . 
F 4 HOH A 89 198 198 HOH HOH . 
F 4 HOH A 90 199 199 HOH HOH . 
F 4 HOH A 91 201 201 HOH HOH . 
F 4 HOH A 92 203 203 HOH HOH . 
F 4 HOH A 93 204 204 HOH HOH . 
F 4 HOH A 94 205 205 HOH HOH . 
F 4 HOH A 95 206 206 HOH HOH . 
F 4 HOH A 96 210 210 HOH HOH . 
F 4 HOH A 97 211 211 HOH HOH . 
F 4 HOH A 98 212 212 HOH HOH . 
F 4 HOH A 99 213 213 HOH HOH . 
F 4 HOH A 100 214 214 HOH HOH . 
F 4 HOH A 101 215 215 HOH HOH . 
F 4 HOH A 102 217 217 HOH HOH . 
F 4 HOH A 103 218 218 HOH HOH . 
F 4 HOH A 104 221 221 HOH HOH . 
F 4 HOH A 105 222 222 HOH HOH . 
F 4 HOH A 106 225 225 HOH HOH . 
F 4 HOH A 107 229 229 HOH HOH . 
F 4 HOH A 108 231 231 HOH HOH . 
F 4 HOH A 109 232 232 HOH HOH . 
F 4 HOH A 110 233 233 HOH HOH . 
F 4 HOH A 111 235 235 HOH HOH . 
F 4 HOH A 112 236 236 HOH HOH . 
F 4 HOH A 113 243 243 HOH HOH . 
F 4 HOH A 114 244 244 HOH HOH . 
F 4 HOH A 115 245 245 HOH HOH . 
F 4 HOH A 116 246 246 HOH HOH . 
F 4 HOH A 117 247 247 HOH HOH . 
F 4 HOH A 118 248 248 HOH HOH . 
F 4 HOH A 119 256 256 HOH HOH . 
F 4 HOH A 120 257 257 HOH HOH . 
F 4 HOH A 121 258 258 HOH HOH . 
G 4 HOH B 1 102 102 HOH HOH . 
G 4 HOH B 2 104 1 HOH HOH . 
G 4 HOH B 3 105 105 HOH HOH . 
G 4 HOH B 4 106 2 HOH HOH . 
G 4 HOH B 5 107 3 HOH HOH . 
G 4 HOH B 6 109 109 HOH HOH . 
G 4 HOH B 7 110 110 HOH HOH . 
G 4 HOH B 8 111 111 HOH HOH . 
G 4 HOH B 9 112 112 HOH HOH . 
G 4 HOH B 10 113 113 HOH HOH . 
G 4 HOH B 11 114 114 HOH HOH . 
G 4 HOH B 12 115 5 HOH HOH . 
G 4 HOH B 13 116 116 HOH HOH . 
G 4 HOH B 14 117 117 HOH HOH . 
G 4 HOH B 15 118 8 HOH HOH . 
G 4 HOH B 16 119 10 HOH HOH . 
G 4 HOH B 17 120 12 HOH HOH . 
G 4 HOH B 18 121 13 HOH HOH . 
G 4 HOH B 19 122 122 HOH HOH . 
G 4 HOH B 20 123 16 HOH HOH . 
G 4 HOH B 21 124 124 HOH HOH . 
G 4 HOH B 22 125 17 HOH HOH . 
G 4 HOH B 23 126 19 HOH HOH . 
G 4 HOH B 24 127 20 HOH HOH . 
G 4 HOH B 25 128 22 HOH HOH . 
G 4 HOH B 26 129 129 HOH HOH . 
G 4 HOH B 27 130 25 HOH HOH . 
G 4 HOH B 28 131 26 HOH HOH . 
G 4 HOH B 29 132 28 HOH HOH . 
G 4 HOH B 30 133 29 HOH HOH . 
G 4 HOH B 31 134 134 HOH HOH . 
G 4 HOH B 32 135 32 HOH HOH . 
G 4 HOH B 33 136 33 HOH HOH . 
G 4 HOH B 34 137 34 HOH HOH . 
G 4 HOH B 35 138 38 HOH HOH . 
G 4 HOH B 36 139 139 HOH HOH . 
G 4 HOH B 37 140 140 HOH HOH . 
G 4 HOH B 38 141 141 HOH HOH . 
G 4 HOH B 39 142 41 HOH HOH . 
G 4 HOH B 40 143 45 HOH HOH . 
G 4 HOH B 41 144 24 HOH HOH . 
G 4 HOH B 42 145 145 HOH HOH . 
G 4 HOH B 43 146 46 HOH HOH . 
G 4 HOH B 44 147 47 HOH HOH . 
G 4 HOH B 45 148 148 HOH HOH . 
G 4 HOH B 46 149 49 HOH HOH . 
G 4 HOH B 47 150 150 HOH HOH . 
G 4 HOH B 48 151 151 HOH HOH . 
G 4 HOH B 49 152 152 HOH HOH . 
G 4 HOH B 50 153 153 HOH HOH . 
G 4 HOH B 51 154 154 HOH HOH . 
G 4 HOH B 52 155 50 HOH HOH . 
G 4 HOH B 53 156 156 HOH HOH . 
G 4 HOH B 54 157 51 HOH HOH . 
G 4 HOH B 55 158 158 HOH HOH . 
G 4 HOH B 56 159 53 HOH HOH . 
G 4 HOH B 57 160 54 HOH HOH . 
G 4 HOH B 58 161 56 HOH HOH . 
G 4 HOH B 59 162 58 HOH HOH . 
G 4 HOH B 60 163 60 HOH HOH . 
G 4 HOH B 61 164 61 HOH HOH . 
G 4 HOH B 62 165 165 HOH HOH . 
G 4 HOH B 63 166 62 HOH HOH . 
G 4 HOH B 64 167 167 HOH HOH . 
G 4 HOH B 65 168 168 HOH HOH . 
G 4 HOH B 66 169 169 HOH HOH . 
G 4 HOH B 67 170 63 HOH HOH . 
G 4 HOH B 68 171 171 HOH HOH . 
G 4 HOH B 69 172 172 HOH HOH . 
G 4 HOH B 70 173 173 HOH HOH . 
G 4 HOH B 71 174 64 HOH HOH . 
G 4 HOH B 72 175 66 HOH HOH . 
G 4 HOH B 73 176 176 HOH HOH . 
G 4 HOH B 74 177 177 HOH HOH . 
G 4 HOH B 75 178 67 HOH HOH . 
G 4 HOH B 76 179 70 HOH HOH . 
G 4 HOH B 77 180 180 HOH HOH . 
G 4 HOH B 78 181 181 HOH HOH . 
G 4 HOH B 79 182 182 HOH HOH . 
G 4 HOH B 80 183 183 HOH HOH . 
G 4 HOH B 81 184 71 HOH HOH . 
G 4 HOH B 82 185 72 HOH HOH . 
G 4 HOH B 83 186 74 HOH HOH . 
G 4 HOH B 84 187 187 HOH HOH . 
G 4 HOH B 85 188 76 HOH HOH . 
G 4 HOH B 86 189 189 HOH HOH . 
G 4 HOH B 87 190 190 HOH HOH . 
G 4 HOH B 88 191 191 HOH HOH . 
G 4 HOH B 89 193 79 HOH HOH . 
G 4 HOH B 90 194 194 HOH HOH . 
G 4 HOH B 91 195 80 HOH HOH . 
G 4 HOH B 92 196 82 HOH HOH . 
G 4 HOH B 93 197 83 HOH HOH . 
G 4 HOH B 94 198 84 HOH HOH . 
G 4 HOH B 95 199 85 HOH HOH . 
G 4 HOH B 96 200 200 HOH HOH . 
G 4 HOH B 97 201 86 HOH HOH . 
G 4 HOH B 98 202 202 HOH HOH . 
G 4 HOH B 99 203 87 HOH HOH . 
G 4 HOH B 100 204 94 HOH HOH . 
G 4 HOH B 101 205 98 HOH HOH . 
G 4 HOH B 102 206 100 HOH HOH . 
G 4 HOH B 103 207 207 HOH HOH . 
G 4 HOH B 104 208 208 HOH HOH . 
G 4 HOH B 105 209 209 HOH HOH . 
G 4 HOH B 106 216 216 HOH HOH . 
G 4 HOH B 107 219 219 HOH HOH . 
G 4 HOH B 108 220 220 HOH HOH . 
G 4 HOH B 109 223 223 HOH HOH . 
G 4 HOH B 110 226 226 HOH HOH . 
G 4 HOH B 111 227 227 HOH HOH . 
G 4 HOH B 112 230 230 HOH HOH . 
G 4 HOH B 113 234 234 HOH HOH . 
G 4 HOH B 114 237 237 HOH HOH . 
G 4 HOH B 115 239 239 HOH HOH . 
G 4 HOH B 116 240 240 HOH HOH . 
G 4 HOH B 117 241 241 HOH HOH . 
G 4 HOH B 118 249 249 HOH HOH . 
G 4 HOH B 119 250 250 HOH HOH . 
G 4 HOH B 120 251 251 HOH HOH . 
G 4 HOH B 121 252 252 HOH HOH . 
G 4 HOH B 122 253 253 HOH HOH . 
G 4 HOH B 123 254 254 HOH HOH . 
G 4 HOH B 124 255 255 HOH HOH . 
G 4 HOH B 125 259 259 HOH HOH . 
G 4 HOH B 126 260 260 HOH HOH . 
G 4 HOH B 127 261 261 HOH HOH . 
G 4 HOH B 128 262 262 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 23.934 23.504 35.631 1 46.56 ? C1 GOL 101 B 1 
HETATM 2 O O1 GOL . . . E 3 23.284 23.442 34.371 1 44.37 ? O1 GOL 101 B 1 
HETATM 3 C C2 GOL . . . E 3 24.212 24.945 36.056 1 46.52 ? C2 GOL 101 B 1 
HETATM 4 O O2 GOL . . . E 3 25.597 25.072 36.291 1 47.36 ? O2 GOL 101 B 1 
HETATM 5 C C3 GOL . . . E 3 23.459 25.268 37.347 1 47.33 ? C3 GOL 101 B 1 
HETATM 6 O O3 GOL . . . E 3 22.499 26.29 37.139 1 47.46 ? O3 GOL 101 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           6 
#