data_3KDI # _model_server_result.job_id 5HnHrmdYLKbaz1vZMV175w _model_server_result.datetime_utc '2024-11-30 03:37:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kdi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":191}' # _entry.id 3KDI # _exptl.entry_id 3KDI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 264.317 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KDI _cell.length_a 60.922 _cell.length_b 60.922 _cell.length_c 253.382 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KDI _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -30.461 52.76 42.230333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H20 O4' _chem_comp.formula_weight 264.317 _chem_comp.id A8S _chem_comp.mon_nstd_flag . _chem_comp.name '(2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(+)-abscisic acid;(2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxo-2-cyclohexen-1-yl]-3-methyl-2,4-pentadienoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C1 A8S sing 1 n n O12 C1 A8S doub 2 z n C1 C2 A8S sing 3 n n C2 C3 A8S doub 4 n n C2 H2 A8S sing 5 n n C3 C4 A8S sing 6 e n C3 C6 A8S sing 7 n n C4 C5 A8S doub 8 n n C4 H4 A8S sing 9 n n C5 C7 A8S sing 10 n n C5 H5 A8S sing 11 n n C6 H6 A8S sing 12 n n C6 H6A A8S sing 13 n n C6 H6B A8S sing 14 n n O7 C7 A8S sing 15 n n C7 C12 A8S sing 16 n n C7 C8 A8S sing 17 n n O7 HO7 A8S sing 18 n n C8 C13 A8S sing 19 n n C8 C9 A8S doub 20 n n C9 C10 A8S sing 21 n n C9 H9 A8S sing 22 n n C11 C10 A8S sing 23 n n C10 O10 A8S doub 24 n n C12 C11 A8S sing 25 n n C11 H11 A8S sing 26 n n C11 H11A A8S sing 27 n n C15 C12 A8S sing 28 n n C14 C12 A8S sing 29 n n O11 HO11 A8S sing 30 n n C13 H13 A8S sing 31 n n C13 H13A A8S sing 32 n n C14 H14 A8S sing 33 n n C14 H14A A8S sing 34 n n C14 H14B A8S sing 35 n n C15 H15 A8S sing 36 n n C15 H15A A8S sing 37 n n C15 H15B A8S sing 38 n n C13 H13B A8S sing 39 n n # _atom_sites.entry_id 3KDI _atom_sites.fract_transf_matrix[1][1] 0.016414 _atom_sites.fract_transf_matrix[1][2] 0.009477 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003947 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A8S A 1 191 191 A8S A8S . C 3 HOH A 1 192 192 HOH HOH . C 3 HOH A 2 193 193 HOH HOH . C 3 HOH A 3 194 194 HOH HOH . C 3 HOH A 4 195 195 HOH HOH . C 3 HOH A 5 196 196 HOH HOH . C 3 HOH A 6 197 197 HOH HOH . C 3 HOH A 7 198 198 HOH HOH . C 3 HOH A 8 199 199 HOH HOH . C 3 HOH A 9 200 200 HOH HOH . C 3 HOH A 10 201 201 HOH HOH . C 3 HOH A 11 202 202 HOH HOH . C 3 HOH A 12 203 203 HOH HOH . C 3 HOH A 13 204 204 HOH HOH . C 3 HOH A 14 205 205 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A8S . . . B 2 1.857 28.95 11.019 1 64.95 ? C1 A8S 191 A 1 HETATM 2 C C2 A8S . . . B 2 2.585 28.562 12.239 1 56.64 ? C2 A8S 191 A 1 HETATM 3 C C3 A8S . . . B 2 3.268 29.446 12.987 1 55.52 ? C3 A8S 191 A 1 HETATM 4 C C4 A8S . . . B 2 3.315 30.875 12.649 1 53.72 ? C4 A8S 191 A 1 HETATM 5 C C5 A8S . . . B 2 4.188 31.664 13.263 1 52.68 ? C5 A8S 191 A 1 HETATM 6 C C6 A8S . . . B 2 4.002 28.964 14.199 1 63.28 ? C6 A8S 191 A 1 HETATM 7 C C7 A8S . . . B 2 4.299 33.141 12.961 1 47.55 ? C7 A8S 191 A 1 HETATM 8 O O7 A8S . . . B 2 3.55 33.474 11.794 1 52.12 ? O7 A8S 191 A 1 HETATM 9 C C8 A8S . . . B 2 3.735 33.909 14.131 1 61.53 ? C8 A8S 191 A 1 HETATM 10 C C9 A8S . . . B 2 4.536 34.277 15.149 1 68.16 ? C9 A8S 191 A 1 HETATM 11 C C10 A8S . . . B 2 5.991 34.05 15.082 1 68.28 ? C10 A8S 191 A 1 HETATM 12 O O10 A8S . . . B 2 6.693 34.419 16.004 1 73.43 ? O10 A8S 191 A 1 HETATM 13 C C11 A8S . . . B 2 6.63 33.383 13.881 1 61.71 ? C11 A8S 191 A 1 HETATM 14 O O11 A8S . . . B 2 1.773 30.152 10.685 1 77.36 ? O11 A8S 191 A 1 HETATM 15 C C12 A8S . . . B 2 5.749 33.504 12.64 1 55.04 ? C12 A8S 191 A 1 HETATM 16 O O12 A8S . . . B 2 1.346 28.05 10.331 1 57.17 ? O12 A8S 191 A 1 HETATM 17 C C13 A8S . . . B 2 2.272 34.269 14.155 1 46.52 ? C13 A8S 191 A 1 HETATM 18 C C14 A8S . . . B 2 6.282 32.614 11.512 1 43.42 ? C14 A8S 191 A 1 HETATM 19 C C15 A8S . . . B 2 5.768 34.945 12.142 1 45.69 ? C15 A8S 191 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #