data_3KDJ
#
_model_server_result.job_id            ZJFRIldzbIUzNxIfUIiC1Q 
_model_server_result.datetime_utc      '2024-11-08 16:34:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kdj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":222}' 
#
_entry.id    3KDJ 
#
_exptl.entry_id    3KDJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              264.317 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3KDJ 
_cell.length_a            61.61 
_cell.length_b            86.788 
_cell.length_c            110.701 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KDJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 149 B CYS 267 1_555 B SG CYS 241 B CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc1 B OD2 ASP 59 B ASP 177 1_555 D MN MN . B MN 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc2 B OD1 ASP 229 B ASP 347 1_555 D MN MN . B MN 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc3 B OD2 ASP 295 B ASP 413 1_555 D MN MN . B MN 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc4 D MN MN . B MN 435 1_555 F O HOH . B HOH 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? 
metalc ? metalc5 D MN MN . B MN 435 1_555 F O HOH . B HOH 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
#
_chem_comp.formula           'C15 H20 O4' 
_chem_comp.formula_weight    264.317 
_chem_comp.id                A8S 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(+)-abscisic acid;(2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxo-2-cyclohexen-1-yl]-3-methyl-2,4-pentadienoic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O11 C1 A8S sing 1 n n 
O12 C1 A8S doub 2 z n 
C1 C2 A8S sing 3 n n 
C2 C3 A8S doub 4 n n 
C2 H2 A8S sing 5 n n 
C3 C4 A8S sing 6 e n 
C3 C6 A8S sing 7 n n 
C4 C5 A8S doub 8 n n 
C4 H4 A8S sing 9 n n 
C5 C7 A8S sing 10 n n 
C5 H5 A8S sing 11 n n 
C6 H6 A8S sing 12 n n 
C6 H6A A8S sing 13 n n 
C6 H6B A8S sing 14 n n 
O7 C7 A8S sing 15 n n 
C7 C12 A8S sing 16 n n 
C7 C8 A8S sing 17 n n 
O7 HO7 A8S sing 18 n n 
C8 C13 A8S sing 19 n n 
C8 C9 A8S doub 20 n n 
C9 C10 A8S sing 21 n n 
C9 H9 A8S sing 22 n n 
C11 C10 A8S sing 23 n n 
C10 O10 A8S doub 24 n n 
C12 C11 A8S sing 25 n n 
C11 H11 A8S sing 26 n n 
C11 H11A A8S sing 27 n n 
C15 C12 A8S sing 28 n n 
C14 C12 A8S sing 29 n n 
O11 HO11 A8S sing 30 n n 
C13 H13 A8S sing 31 n n 
C13 H13A A8S sing 32 n n 
C14 H14 A8S sing 33 n n 
C14 H14A A8S sing 34 n n 
C14 H14B A8S sing 35 n n 
C15 H15 A8S sing 36 n n 
C15 H15A A8S sing 37 n n 
C15 H15B A8S sing 38 n n 
C13 H13B A8S sing 39 n n 
#
_atom_sites.entry_id                     3KDJ 
_atom_sites.fract_transf_matrix[1][1]    0.016231 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011522 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009033 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 A8S A 1 222 222 A8S A8S . 
D 4 MN B 1 435 435 MN MN . 
E 5 HOH A 1 223 223 HOH HOH . 
E 5 HOH A 2 224 224 HOH HOH . 
E 5 HOH A 3 225 225 HOH HOH . 
E 5 HOH A 4 226 226 HOH HOH . 
E 5 HOH A 5 227 227 HOH HOH . 
E 5 HOH A 6 228 228 HOH HOH . 
E 5 HOH A 7 229 229 HOH HOH . 
E 5 HOH A 8 230 230 HOH HOH . 
E 5 HOH A 9 231 231 HOH HOH . 
E 5 HOH A 10 232 232 HOH HOH . 
E 5 HOH A 11 233 233 HOH HOH . 
E 5 HOH A 12 234 234 HOH HOH . 
E 5 HOH A 13 235 235 HOH HOH . 
E 5 HOH A 14 236 236 HOH HOH . 
E 5 HOH A 15 237 237 HOH HOH . 
E 5 HOH A 16 238 238 HOH HOH . 
E 5 HOH A 17 239 239 HOH HOH . 
E 5 HOH A 18 240 240 HOH HOH . 
E 5 HOH A 19 241 241 HOH HOH . 
E 5 HOH A 20 242 242 HOH HOH . 
E 5 HOH A 21 243 243 HOH HOH . 
E 5 HOH A 22 244 244 HOH HOH . 
E 5 HOH A 23 245 245 HOH HOH . 
E 5 HOH A 24 246 246 HOH HOH . 
E 5 HOH A 25 247 247 HOH HOH . 
E 5 HOH A 26 248 248 HOH HOH . 
E 5 HOH A 27 249 249 HOH HOH . 
E 5 HOH A 28 250 250 HOH HOH . 
E 5 HOH A 29 251 251 HOH HOH . 
E 5 HOH A 30 252 252 HOH HOH . 
E 5 HOH A 31 253 253 HOH HOH . 
E 5 HOH A 32 254 254 HOH HOH . 
E 5 HOH A 33 255 255 HOH HOH . 
E 5 HOH A 34 256 256 HOH HOH . 
E 5 HOH A 35 257 257 HOH HOH . 
E 5 HOH A 36 258 258 HOH HOH . 
E 5 HOH A 37 259 259 HOH HOH . 
E 5 HOH A 38 260 260 HOH HOH . 
E 5 HOH A 39 261 261 HOH HOH . 
E 5 HOH A 40 262 262 HOH HOH . 
E 5 HOH A 41 263 263 HOH HOH . 
E 5 HOH A 42 264 264 HOH HOH . 
E 5 HOH A 43 265 265 HOH HOH . 
E 5 HOH A 44 266 266 HOH HOH . 
E 5 HOH A 45 267 267 HOH HOH . 
E 5 HOH A 46 268 268 HOH HOH . 
E 5 HOH A 47 269 269 HOH HOH . 
E 5 HOH A 48 270 270 HOH HOH . 
E 5 HOH A 49 271 271 HOH HOH . 
E 5 HOH A 50 272 272 HOH HOH . 
E 5 HOH A 51 273 273 HOH HOH . 
E 5 HOH A 52 274 274 HOH HOH . 
E 5 HOH A 53 275 275 HOH HOH . 
E 5 HOH A 54 276 276 HOH HOH . 
E 5 HOH A 55 277 277 HOH HOH . 
E 5 HOH A 56 278 278 HOH HOH . 
E 5 HOH A 57 279 279 HOH HOH . 
E 5 HOH A 58 280 280 HOH HOH . 
E 5 HOH A 59 281 281 HOH HOH . 
E 5 HOH A 60 282 282 HOH HOH . 
E 5 HOH A 61 283 283 HOH HOH . 
E 5 HOH A 62 284 284 HOH HOH . 
E 5 HOH A 63 285 285 HOH HOH . 
E 5 HOH A 64 286 286 HOH HOH . 
E 5 HOH A 65 287 287 HOH HOH . 
E 5 HOH A 66 288 288 HOH HOH . 
E 5 HOH A 67 289 289 HOH HOH . 
E 5 HOH A 68 290 290 HOH HOH . 
E 5 HOH A 69 291 291 HOH HOH . 
E 5 HOH A 70 292 292 HOH HOH . 
E 5 HOH A 71 293 293 HOH HOH . 
E 5 HOH A 72 294 294 HOH HOH . 
E 5 HOH A 73 295 295 HOH HOH . 
E 5 HOH A 74 296 296 HOH HOH . 
E 5 HOH A 75 297 297 HOH HOH . 
E 5 HOH A 76 298 298 HOH HOH . 
E 5 HOH A 77 299 299 HOH HOH . 
E 5 HOH A 78 300 300 HOH HOH . 
E 5 HOH A 79 301 301 HOH HOH . 
E 5 HOH A 80 302 302 HOH HOH . 
E 5 HOH A 81 303 303 HOH HOH . 
E 5 HOH A 82 304 304 HOH HOH . 
E 5 HOH A 83 305 305 HOH HOH . 
E 5 HOH A 84 306 306 HOH HOH . 
E 5 HOH A 85 307 307 HOH HOH . 
E 5 HOH A 86 308 308 HOH HOH . 
E 5 HOH A 87 309 309 HOH HOH . 
E 5 HOH A 88 472 472 HOH HOH . 
F 5 HOH B 1 436 436 HOH HOH . 
F 5 HOH B 2 437 437 HOH HOH . 
F 5 HOH B 3 438 438 HOH HOH . 
F 5 HOH B 4 439 439 HOH HOH . 
F 5 HOH B 5 440 440 HOH HOH . 
F 5 HOH B 6 441 441 HOH HOH . 
F 5 HOH B 7 442 442 HOH HOH . 
F 5 HOH B 8 443 443 HOH HOH . 
F 5 HOH B 9 444 444 HOH HOH . 
F 5 HOH B 10 445 445 HOH HOH . 
F 5 HOH B 11 446 446 HOH HOH . 
F 5 HOH B 12 447 447 HOH HOH . 
F 5 HOH B 13 448 448 HOH HOH . 
F 5 HOH B 14 449 449 HOH HOH . 
F 5 HOH B 15 450 450 HOH HOH . 
F 5 HOH B 16 451 451 HOH HOH . 
F 5 HOH B 17 452 452 HOH HOH . 
F 5 HOH B 18 453 453 HOH HOH . 
F 5 HOH B 19 454 454 HOH HOH . 
F 5 HOH B 20 455 455 HOH HOH . 
F 5 HOH B 21 456 456 HOH HOH . 
F 5 HOH B 22 457 457 HOH HOH . 
F 5 HOH B 23 458 458 HOH HOH . 
F 5 HOH B 24 459 459 HOH HOH . 
F 5 HOH B 25 460 460 HOH HOH . 
F 5 HOH B 26 461 461 HOH HOH . 
F 5 HOH B 27 462 462 HOH HOH . 
F 5 HOH B 28 463 463 HOH HOH . 
F 5 HOH B 29 464 464 HOH HOH . 
F 5 HOH B 30 465 465 HOH HOH . 
F 5 HOH B 31 466 466 HOH HOH . 
F 5 HOH B 32 467 467 HOH HOH . 
F 5 HOH B 33 468 468 HOH HOH . 
F 5 HOH B 34 469 469 HOH HOH . 
F 5 HOH B 35 470 470 HOH HOH . 
F 5 HOH B 36 471 471 HOH HOH . 
F 5 HOH B 37 473 473 HOH HOH . 
F 5 HOH B 38 474 474 HOH HOH . 
F 5 HOH B 39 475 475 HOH HOH . 
F 5 HOH B 40 476 476 HOH HOH . 
F 5 HOH B 41 477 477 HOH HOH . 
F 5 HOH B 42 478 478 HOH HOH . 
F 5 HOH B 43 479 479 HOH HOH . 
F 5 HOH B 44 480 480 HOH HOH . 
F 5 HOH B 45 481 481 HOH HOH . 
F 5 HOH B 46 482 482 HOH HOH . 
F 5 HOH B 47 483 483 HOH HOH . 
F 5 HOH B 48 484 484 HOH HOH . 
F 5 HOH B 49 485 485 HOH HOH . 
F 5 HOH B 50 486 486 HOH HOH . 
F 5 HOH B 51 487 487 HOH HOH . 
F 5 HOH B 52 488 488 HOH HOH . 
F 5 HOH B 53 489 489 HOH HOH . 
F 5 HOH B 54 490 490 HOH HOH . 
F 5 HOH B 55 491 491 HOH HOH . 
F 5 HOH B 56 492 492 HOH HOH . 
F 5 HOH B 57 493 493 HOH HOH . 
F 5 HOH B 58 494 494 HOH HOH . 
F 5 HOH B 59 495 495 HOH HOH . 
F 5 HOH B 60 496 496 HOH HOH . 
F 5 HOH B 61 497 497 HOH HOH . 
F 5 HOH B 62 498 498 HOH HOH . 
F 5 HOH B 63 499 499 HOH HOH . 
F 5 HOH B 64 500 500 HOH HOH . 
F 5 HOH B 65 501 501 HOH HOH . 
F 5 HOH B 66 502 502 HOH HOH . 
F 5 HOH B 67 503 503 HOH HOH . 
F 5 HOH B 68 504 504 HOH HOH . 
F 5 HOH B 69 505 505 HOH HOH . 
F 5 HOH B 70 506 506 HOH HOH . 
F 5 HOH B 71 507 507 HOH HOH . 
F 5 HOH B 72 508 508 HOH HOH . 
F 5 HOH B 73 509 509 HOH HOH . 
F 5 HOH B 74 510 510 HOH HOH . 
F 5 HOH B 75 511 511 HOH HOH . 
F 5 HOH B 76 512 512 HOH HOH . 
F 5 HOH B 77 513 513 HOH HOH . 
F 5 HOH B 78 514 514 HOH HOH . 
F 5 HOH B 79 515 515 HOH HOH . 
F 5 HOH B 80 516 516 HOH HOH . 
F 5 HOH B 81 517 517 HOH HOH . 
F 5 HOH B 82 518 518 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 A8S . . . C 3 3.968 14.386 13.039 1 63.95 ? C1 A8S 222 A 1 
HETATM 2 C C2 A8S . . . C 3 4.902 13.228 12.945 1 55.72 ? C2 A8S 222 A 1 
HETATM 3 C C3 A8S . . . C 3 4.699 11.994 13.455 1 54.45 ? C3 A8S 222 A 1 
HETATM 4 C C4 A8S . . . C 3 3.469 11.625 14.199 1 50.81 ? C4 A8S 222 A 1 
HETATM 5 C C5 A8S . . . C 3 3.478 10.531 14.963 1 51.03 ? C5 A8S 222 A 1 
HETATM 6 C C6 A8S . . . C 3 5.765 10.948 13.271 1 52.15 ? C6 A8S 222 A 1 
HETATM 7 C C7 A8S . . . C 3 2.259 10.128 15.756 1 50.96 ? C7 A8S 222 A 1 
HETATM 8 O O7 A8S . . . C 3 1.449 11.299 15.86 1 51.51 ? O7 A8S 222 A 1 
HETATM 9 C C8 A8S . . . C 3 1.496 9.052 15.035 1 48.66 ? C8 A8S 222 A 1 
HETATM 10 C C9 A8S . . . C 3 1.766 7.757 15.278 1 48.59 ? C9 A8S 222 A 1 
HETATM 11 C C10 A8S . . . C 3 2.738 7.347 16.315 1 51.5 ? C10 A8S 222 A 1 
HETATM 12 O O10 A8S . . . C 3 3.026 6.166 16.484 1 59.17 ? O10 A8S 222 A 1 
HETATM 13 C C11 A8S . . . C 3 3.394 8.37 17.208 1 53.16 ? C11 A8S 222 A 1 
HETATM 14 O O11 A8S . . . C 3 2.789 14.235 13.434 1 68.47 ? O11 A8S 222 A 1 
HETATM 15 C C12 A8S . . . C 3 2.659 9.704 17.17 1 56.84 ? C12 A8S 222 A 1 
HETATM 16 O O12 A8S . . . C 3 4.388 15.526 12.713 1 63.73 ? O12 A8S 222 A 1 
HETATM 17 C C13 A8S . . . C 3 0.437 9.44 14.048 1 46.2 ? C13 A8S 222 A 1 
HETATM 18 C C14 A8S . . . C 3 3.557 10.768 17.79 1 58.38 ? C14 A8S 222 A 1 
HETATM 19 C C15 A8S . . . C 3 1.402 9.548 18.015 1 57.1 ? C15 A8S 222 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           350 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           19 
#