data_3KDJ # _model_server_result.job_id 7W-3mmScPR5CB1d71Wtp3A _model_server_result.datetime_utc '2024-11-08 16:44:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kdj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":435}' # _entry.id 3KDJ # _exptl.entry_id 3KDJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KDJ _cell.length_a 61.61 _cell.length_b 86.788 _cell.length_c 110.701 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KDJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 149 B CYS 267 1_555 B SG CYS 241 B CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc1 B OD2 ASP 59 B ASP 177 1_555 D MN MN . B MN 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc2 B OD1 ASP 229 B ASP 347 1_555 D MN MN . B MN 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc3 B OD2 ASP 295 B ASP 413 1_555 D MN MN . B MN 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc4 D MN MN . B MN 435 1_555 F O HOH . B HOH 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc5 D MN MN . B MN 435 1_555 F O HOH . B HOH 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3KDJ _atom_sites.fract_transf_matrix[1][1] 0.016231 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011522 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009033 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A8S A 1 222 222 A8S A8S . D 4 MN B 1 435 435 MN MN . E 5 HOH A 1 223 223 HOH HOH . E 5 HOH A 2 224 224 HOH HOH . E 5 HOH A 3 225 225 HOH HOH . E 5 HOH A 4 226 226 HOH HOH . E 5 HOH A 5 227 227 HOH HOH . E 5 HOH A 6 228 228 HOH HOH . E 5 HOH A 7 229 229 HOH HOH . E 5 HOH A 8 230 230 HOH HOH . E 5 HOH A 9 231 231 HOH HOH . E 5 HOH A 10 232 232 HOH HOH . E 5 HOH A 11 233 233 HOH HOH . E 5 HOH A 12 234 234 HOH HOH . E 5 HOH A 13 235 235 HOH HOH . E 5 HOH A 14 236 236 HOH HOH . E 5 HOH A 15 237 237 HOH HOH . E 5 HOH A 16 238 238 HOH HOH . E 5 HOH A 17 239 239 HOH HOH . E 5 HOH A 18 240 240 HOH HOH . E 5 HOH A 19 241 241 HOH HOH . E 5 HOH A 20 242 242 HOH HOH . E 5 HOH A 21 243 243 HOH HOH . E 5 HOH A 22 244 244 HOH HOH . E 5 HOH A 23 245 245 HOH HOH . E 5 HOH A 24 246 246 HOH HOH . E 5 HOH A 25 247 247 HOH HOH . E 5 HOH A 26 248 248 HOH HOH . E 5 HOH A 27 249 249 HOH HOH . E 5 HOH A 28 250 250 HOH HOH . E 5 HOH A 29 251 251 HOH HOH . E 5 HOH A 30 252 252 HOH HOH . E 5 HOH A 31 253 253 HOH HOH . E 5 HOH A 32 254 254 HOH HOH . E 5 HOH A 33 255 255 HOH HOH . E 5 HOH A 34 256 256 HOH HOH . E 5 HOH A 35 257 257 HOH HOH . E 5 HOH A 36 258 258 HOH HOH . E 5 HOH A 37 259 259 HOH HOH . E 5 HOH A 38 260 260 HOH HOH . E 5 HOH A 39 261 261 HOH HOH . E 5 HOH A 40 262 262 HOH HOH . E 5 HOH A 41 263 263 HOH HOH . E 5 HOH A 42 264 264 HOH HOH . E 5 HOH A 43 265 265 HOH HOH . E 5 HOH A 44 266 266 HOH HOH . E 5 HOH A 45 267 267 HOH HOH . E 5 HOH A 46 268 268 HOH HOH . E 5 HOH A 47 269 269 HOH HOH . E 5 HOH A 48 270 270 HOH HOH . E 5 HOH A 49 271 271 HOH HOH . E 5 HOH A 50 272 272 HOH HOH . E 5 HOH A 51 273 273 HOH HOH . E 5 HOH A 52 274 274 HOH HOH . E 5 HOH A 53 275 275 HOH HOH . E 5 HOH A 54 276 276 HOH HOH . E 5 HOH A 55 277 277 HOH HOH . E 5 HOH A 56 278 278 HOH HOH . E 5 HOH A 57 279 279 HOH HOH . E 5 HOH A 58 280 280 HOH HOH . E 5 HOH A 59 281 281 HOH HOH . E 5 HOH A 60 282 282 HOH HOH . E 5 HOH A 61 283 283 HOH HOH . E 5 HOH A 62 284 284 HOH HOH . E 5 HOH A 63 285 285 HOH HOH . E 5 HOH A 64 286 286 HOH HOH . E 5 HOH A 65 287 287 HOH HOH . E 5 HOH A 66 288 288 HOH HOH . E 5 HOH A 67 289 289 HOH HOH . E 5 HOH A 68 290 290 HOH HOH . E 5 HOH A 69 291 291 HOH HOH . E 5 HOH A 70 292 292 HOH HOH . E 5 HOH A 71 293 293 HOH HOH . E 5 HOH A 72 294 294 HOH HOH . E 5 HOH A 73 295 295 HOH HOH . E 5 HOH A 74 296 296 HOH HOH . E 5 HOH A 75 297 297 HOH HOH . E 5 HOH A 76 298 298 HOH HOH . E 5 HOH A 77 299 299 HOH HOH . E 5 HOH A 78 300 300 HOH HOH . E 5 HOH A 79 301 301 HOH HOH . E 5 HOH A 80 302 302 HOH HOH . E 5 HOH A 81 303 303 HOH HOH . E 5 HOH A 82 304 304 HOH HOH . E 5 HOH A 83 305 305 HOH HOH . E 5 HOH A 84 306 306 HOH HOH . E 5 HOH A 85 307 307 HOH HOH . E 5 HOH A 86 308 308 HOH HOH . E 5 HOH A 87 309 309 HOH HOH . E 5 HOH A 88 472 472 HOH HOH . F 5 HOH B 1 436 436 HOH HOH . F 5 HOH B 2 437 437 HOH HOH . F 5 HOH B 3 438 438 HOH HOH . F 5 HOH B 4 439 439 HOH HOH . F 5 HOH B 5 440 440 HOH HOH . F 5 HOH B 6 441 441 HOH HOH . F 5 HOH B 7 442 442 HOH HOH . F 5 HOH B 8 443 443 HOH HOH . F 5 HOH B 9 444 444 HOH HOH . F 5 HOH B 10 445 445 HOH HOH . F 5 HOH B 11 446 446 HOH HOH . F 5 HOH B 12 447 447 HOH HOH . F 5 HOH B 13 448 448 HOH HOH . F 5 HOH B 14 449 449 HOH HOH . F 5 HOH B 15 450 450 HOH HOH . F 5 HOH B 16 451 451 HOH HOH . F 5 HOH B 17 452 452 HOH HOH . F 5 HOH B 18 453 453 HOH HOH . F 5 HOH B 19 454 454 HOH HOH . F 5 HOH B 20 455 455 HOH HOH . F 5 HOH B 21 456 456 HOH HOH . F 5 HOH B 22 457 457 HOH HOH . F 5 HOH B 23 458 458 HOH HOH . F 5 HOH B 24 459 459 HOH HOH . F 5 HOH B 25 460 460 HOH HOH . F 5 HOH B 26 461 461 HOH HOH . F 5 HOH B 27 462 462 HOH HOH . F 5 HOH B 28 463 463 HOH HOH . F 5 HOH B 29 464 464 HOH HOH . F 5 HOH B 30 465 465 HOH HOH . F 5 HOH B 31 466 466 HOH HOH . F 5 HOH B 32 467 467 HOH HOH . F 5 HOH B 33 468 468 HOH HOH . F 5 HOH B 34 469 469 HOH HOH . F 5 HOH B 35 470 470 HOH HOH . F 5 HOH B 36 471 471 HOH HOH . F 5 HOH B 37 473 473 HOH HOH . F 5 HOH B 38 474 474 HOH HOH . F 5 HOH B 39 475 475 HOH HOH . F 5 HOH B 40 476 476 HOH HOH . F 5 HOH B 41 477 477 HOH HOH . F 5 HOH B 42 478 478 HOH HOH . F 5 HOH B 43 479 479 HOH HOH . F 5 HOH B 44 480 480 HOH HOH . F 5 HOH B 45 481 481 HOH HOH . F 5 HOH B 46 482 482 HOH HOH . F 5 HOH B 47 483 483 HOH HOH . F 5 HOH B 48 484 484 HOH HOH . F 5 HOH B 49 485 485 HOH HOH . F 5 HOH B 50 486 486 HOH HOH . F 5 HOH B 51 487 487 HOH HOH . F 5 HOH B 52 488 488 HOH HOH . F 5 HOH B 53 489 489 HOH HOH . F 5 HOH B 54 490 490 HOH HOH . F 5 HOH B 55 491 491 HOH HOH . F 5 HOH B 56 492 492 HOH HOH . F 5 HOH B 57 493 493 HOH HOH . F 5 HOH B 58 494 494 HOH HOH . F 5 HOH B 59 495 495 HOH HOH . F 5 HOH B 60 496 496 HOH HOH . F 5 HOH B 61 497 497 HOH HOH . F 5 HOH B 62 498 498 HOH HOH . F 5 HOH B 63 499 499 HOH HOH . F 5 HOH B 64 500 500 HOH HOH . F 5 HOH B 65 501 501 HOH HOH . F 5 HOH B 66 502 502 HOH HOH . F 5 HOH B 67 503 503 HOH HOH . F 5 HOH B 68 504 504 HOH HOH . F 5 HOH B 69 505 505 HOH HOH . F 5 HOH B 70 506 506 HOH HOH . F 5 HOH B 71 507 507 HOH HOH . F 5 HOH B 72 508 508 HOH HOH . F 5 HOH B 73 509 509 HOH HOH . F 5 HOH B 74 510 510 HOH HOH . F 5 HOH B 75 511 511 HOH HOH . F 5 HOH B 76 512 512 HOH HOH . F 5 HOH B 77 513 513 HOH HOH . F 5 HOH B 78 514 514 HOH HOH . F 5 HOH B 79 515 515 HOH HOH . F 5 HOH B 80 516 516 HOH HOH . F 5 HOH B 81 517 517 HOH HOH . F 5 HOH B 82 518 518 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -10.959 _atom_site.Cartn_y -4.296 _atom_site.Cartn_z 16.77 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 201.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 435 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #