data_3KDT
#
_model_server_result.job_id            raeTVqbqIgv4Sztzy1nfiQ 
_model_server_result.datetime_utc      '2025-03-05 02:55:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kdt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    3KDT 
#
_exptl.entry_id    3KDT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              444.865 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(3-{[2-(4-chlorophenyl)-5-methyl-1,3-oxazol-4-yl]methoxy}benzyl)-N-(methoxycarbonyl)glycine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3KDT 
_cell.length_a            64.754 
_cell.length_b            64.754 
_cell.length_c            123.664 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KDT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,C,E 2 1 
B,D 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C22 H21 Cl N2 O6' 
_chem_comp.formula_weight    444.865 
_chem_comp.id                7HA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(3-{[2-(4-chlorophenyl)-5-methyl-1,3-oxazol-4-yl]methoxy}benzyl)-N-(methoxycarbonyl)glycine 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 7HA sing 1 n n 
C1 H1 7HA sing 2 n n 
C1 H1A 7HA sing 3 n n 
C1 H1B 7HA sing 4 n n 
O6 C2 7HA sing 5 n y 
C2 C3 7HA doub 6 n y 
N4 C3 7HA sing 7 n y 
C3 C14 7HA sing 8 n n 
C5 N4 7HA doub 9 n y 
C7 C5 7HA sing 10 n y 
C5 O6 7HA sing 11 n y 
C8 C7 7HA doub 12 n y 
C12 C7 7HA sing 13 n y 
C9 C8 7HA sing 14 n y 
C8 H8 7HA sing 15 n n 
C10 C9 7HA doub 16 n y 
C9 H9 7HA sing 17 n n 
CL13 C10 7HA sing 18 n n 
C10 C11 7HA sing 19 n y 
C11 C12 7HA doub 20 n y 
C11 H11 7HA sing 21 n n 
C12 H12 7HA sing 22 n n 
C14 O15 7HA sing 23 n n 
C14 H14 7HA sing 24 n n 
C14 H14A 7HA sing 25 n n 
O15 C16 7HA sing 26 n n 
C16 C21 7HA doub 27 n y 
C16 C17 7HA sing 28 n y 
C17 C18 7HA doub 29 n y 
C17 H17 7HA sing 30 n n 
C18 C19 7HA sing 31 n y 
C18 H18 7HA sing 32 n n 
C20 C19 7HA doub 33 n y 
C19 H19 7HA sing 34 n n 
C21 C20 7HA sing 35 n y 
C20 C22 7HA sing 36 n n 
C21 H21 7HA sing 37 n n 
N23 C22 7HA sing 38 n n 
C22 H22 7HA sing 39 n n 
C22 H22A 7HA sing 40 n n 
C24 N23 7HA sing 41 n n 
C28 N23 7HA sing 42 n n 
C24 C25 7HA sing 43 n n 
C24 H24 7HA sing 44 n n 
C24 H24A 7HA sing 45 n n 
O26 C25 7HA doub 46 n n 
C25 O27 7HA sing 47 n n 
O27 HO27 7HA sing 48 n n 
O30 C28 7HA sing 49 n n 
C28 O29 7HA doub 50 n n 
C31 O30 7HA sing 51 n n 
C31 H31 7HA sing 52 n n 
C31 H31A 7HA sing 53 n n 
C31 H31B 7HA sing 54 n n 
#
_atom_sites.entry_id                     3KDT 
_atom_sites.fract_transf_matrix[1][1]    0.015443 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015443 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008086 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 7HA A 1 501 501 7HA 7HA . 
D 2 7HA B 1 501 501 7HA 7HA . 
E 3 HOH A 1 1 1 HOH HOH . 
E 3 HOH A 2 2 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 7HA . . . D 2 -15.499 33.218 11.125 1 65.06 ? C1 7HA 501 B 1 
HETATM 2 C C2 7HA . . . D 2 -15.326 34.373 12.085 1 64.58 ? C2 7HA 501 B 1 
HETATM 3 C C3 7HA . . . D 2 -15.855 35.667 11.982 1 63.59 ? C3 7HA 501 B 1 
HETATM 4 N N4 7HA . . . D 2 -15.428 36.341 13.062 1 64.69 ? N4 7HA 501 B 1 
HETATM 5 C C5 7HA . . . D 2 -14.682 35.482 13.79 1 66.87 ? C5 7HA 501 B 1 
HETATM 6 O O6 7HA . . . D 2 -14.643 34.334 13.184 1 65.45 ? O6 7HA 501 B 1 
HETATM 7 C C7 7HA . . . D 2 -14.005 35.887 15.06 1 66.9 ? C7 7HA 501 B 1 
HETATM 8 C C8 7HA . . . D 2 -13.574 34.986 16.043 1 67.83 ? C8 7HA 501 B 1 
HETATM 9 C C9 7HA . . . D 2 -12.935 35.478 17.183 1 67.5 ? C9 7HA 501 B 1 
HETATM 10 C C10 7HA . . . D 2 -12.72 36.851 17.33 1 67.86 ? C10 7HA 501 B 1 
HETATM 11 C C11 7HA . . . D 2 -13.137 37.745 16.351 1 68.05 ? C11 7HA 501 B 1 
HETATM 12 C C12 7HA . . . D 2 -13.771 37.255 15.22 1 68.22 ? C12 7HA 501 B 1 
HETATM 13 CL CL13 7HA . . . D 2 -11.93 37.522 18.721 1 69.02 ? CL13 7HA 501 B 1 
HETATM 14 C C14 7HA . . . D 2 -16.732 36.26 10.913 1 62.24 ? C14 7HA 501 B 1 
HETATM 15 O O15 7HA . . . D 2 -17.197 35.254 9.991 1 57.12 ? O15 7HA 501 B 1 
HETATM 16 C C16 7HA . . . D 2 -18.424 35.225 9.501 1 56.29 ? C16 7HA 501 B 1 
HETATM 17 C C17 7HA . . . D 2 -18.978 36.405 9.003 1 54.86 ? C17 7HA 501 B 1 
HETATM 18 C C18 7HA . . . D 2 -20.271 36.383 8.49 1 54.29 ? C18 7HA 501 B 1 
HETATM 19 C C19 7HA . . . D 2 -21.007 35.206 8.46 1 54.43 ? C19 7HA 501 B 1 
HETATM 20 C C20 7HA . . . D 2 -20.452 34.028 8.946 1 54.21 ? C20 7HA 501 B 1 
HETATM 21 C C21 7HA . . . D 2 -19.165 34.039 9.473 1 54.74 ? C21 7HA 501 B 1 
HETATM 22 C C22 7HA . . . D 2 -21.292 32.79 8.91 1 54.77 ? C22 7HA 501 B 1 
HETATM 23 N N23 7HA . . . D 2 -21.793 32.543 10.259 1 54.45 ? N23 7HA 501 B 1 
HETATM 24 C C24 7HA . . . D 2 -22.645 33.51 10.948 1 53.83 ? C24 7HA 501 B 1 
HETATM 25 C C25 7HA . . . D 2 -24.088 33.274 10.573 1 53.47 ? C25 7HA 501 B 1 
HETATM 26 O O26 7HA . . . D 2 -24.463 32.212 10.095 1 52.11 ? O26 7HA 501 B 1 
HETATM 27 O O27 7HA . . . D 2 -24.95 34.259 10.782 1 54.14 ? O27 7HA 501 B 1 
HETATM 28 C C28 7HA . . . D 2 -21.448 31.415 10.883 1 55.07 ? C28 7HA 501 B 1 
HETATM 29 O O29 7HA . . . D 2 -20.863 30.54 10.266 1 55.82 ? O29 7HA 501 B 1 
HETATM 30 O O30 7HA . . . D 2 -21.738 31.245 12.172 1 55.17 ? O30 7HA 501 B 1 
HETATM 31 C C31 7HA . . . D 2 -22.81 30.34 12.547 1 54.73 ? C31 7HA 501 B 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           31 
#