data_3KE6 # _model_server_result.job_id 6vFOeL-eMujq7_4l_o9v4g _model_server_result.datetime_utc '2024-12-21 11:38:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ke6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":541}' # _entry.id 3KE6 # _exptl.entry_id 3KE6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KE6 _cell.length_a 100.118 _cell.length_b 100.118 _cell.length_c 169.653 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KE6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 A,C,D,E,F,I 3 1 B,G,H,J 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_544 -y+1/2,x-1/2,z-1/4 0 -1 0 1 0 0 0 0 1 50.059 -50.059 -42.41325 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F MN MN . A MN 2 1_555 I O HOH . A HOH 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc2 F MN MN . A MN 2 1_555 I O HOH . A HOH 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc3 F MN MN . A MN 2 1_555 I O HOH . A HOH 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc4 F MN MN . A MN 2 1_555 A OD2 ASP 71 A ASP 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc5 F MN MN . A MN 2 1_555 A OD1 ASP 188 A ASP 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc6 F MN MN . A MN 2 1_555 A OD2 ASP 247 A ASP 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc7 I O HOH . A HOH 97 1_555 E MN MN . A MN 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc8 I O HOH . A HOH 98 1_555 E MN MN . A MN 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc9 I O HOH . A HOH 100 1_555 E MN MN . A MN 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc10 A OD1 ASP 71 A ASP 211 1_555 E MN MN . A MN 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc11 A O VAL 72 A VAL 212 1_555 E MN MN . A MN 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc12 G MN MN . B MN 3 1_555 J O HOH . B HOH 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc13 G MN MN . B MN 3 1_555 J O HOH . B HOH 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc14 G MN MN . B MN 3 1_555 J O HOH . B HOH 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc15 G MN MN . B MN 3 1_555 J O HOH . B HOH 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc16 G MN MN . B MN 3 1_555 B OD1 ASP 71 B ASP 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc17 G MN MN . B MN 3 1_555 B O VAL 72 B VAL 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc18 H MN MN . B MN 4 1_555 J O HOH . B HOH 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc19 H MN MN . B MN 4 1_555 J O HOH . B HOH 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc20 H MN MN . B MN 4 1_555 B OD2 ASP 71 B ASP 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc21 H MN MN . B MN 4 1_555 B OD1 ASP 188 B ASP 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc22 H MN MN . B MN 4 1_555 B OD2 ASP 247 B ASP 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3KE6 _atom_sites.fract_transf_matrix[1][1] 0.009988 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005894 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1 1 SO4 SO4 . D 3 GOL A 1 540 1 GOL GOL . E 4 MN A 1 541 1 MN MN . F 4 MN A 1 2 2 MN MN . G 4 MN B 1 3 3 MN MN . H 4 MN B 1 4 4 MN MN . I 5 HOH A 1 3 3 HOH HOH . I 5 HOH A 2 6 6 HOH HOH . I 5 HOH A 3 7 7 HOH HOH . I 5 HOH A 4 8 8 HOH HOH . I 5 HOH A 5 45 45 HOH HOH . I 5 HOH A 6 46 46 HOH HOH . I 5 HOH A 7 47 47 HOH HOH . I 5 HOH A 8 48 48 HOH HOH . I 5 HOH A 9 49 49 HOH HOH . I 5 HOH A 10 50 50 HOH HOH . I 5 HOH A 11 51 51 HOH HOH . I 5 HOH A 12 52 52 HOH HOH . I 5 HOH A 13 53 53 HOH HOH . I 5 HOH A 14 54 54 HOH HOH . I 5 HOH A 15 55 55 HOH HOH . I 5 HOH A 16 56 56 HOH HOH . I 5 HOH A 17 57 57 HOH HOH . I 5 HOH A 18 58 58 HOH HOH . I 5 HOH A 19 59 59 HOH HOH . I 5 HOH A 20 60 60 HOH HOH . I 5 HOH A 21 61 61 HOH HOH . I 5 HOH A 22 62 62 HOH HOH . I 5 HOH A 23 63 63 HOH HOH . I 5 HOH A 24 64 64 HOH HOH . I 5 HOH A 25 65 65 HOH HOH . I 5 HOH A 26 66 66 HOH HOH . I 5 HOH A 27 68 68 HOH HOH . I 5 HOH A 28 69 69 HOH HOH . I 5 HOH A 29 70 70 HOH HOH . I 5 HOH A 30 71 71 HOH HOH . I 5 HOH A 31 72 72 HOH HOH . I 5 HOH A 32 73 73 HOH HOH . I 5 HOH A 33 74 74 HOH HOH . I 5 HOH A 34 75 75 HOH HOH . I 5 HOH A 35 76 76 HOH HOH . I 5 HOH A 36 77 77 HOH HOH . I 5 HOH A 37 78 78 HOH HOH . I 5 HOH A 38 92 92 HOH HOH . I 5 HOH A 39 93 93 HOH HOH . I 5 HOH A 40 94 94 HOH HOH . I 5 HOH A 41 95 95 HOH HOH . I 5 HOH A 42 96 96 HOH HOH . I 5 HOH A 43 97 97 HOH HOH . I 5 HOH A 44 98 98 HOH HOH . I 5 HOH A 45 99 99 HOH HOH . I 5 HOH A 46 100 100 HOH HOH . I 5 HOH A 47 101 101 HOH HOH . I 5 HOH A 48 102 102 HOH HOH . I 5 HOH A 49 103 103 HOH HOH . I 5 HOH A 50 542 1 HOH HOH . I 5 HOH A 51 543 2 HOH HOH . J 5 HOH B 1 5 5 HOH HOH . J 5 HOH B 2 9 9 HOH HOH . J 5 HOH B 3 10 10 HOH HOH . J 5 HOH B 4 11 11 HOH HOH . J 5 HOH B 5 12 12 HOH HOH . J 5 HOH B 6 13 13 HOH HOH . J 5 HOH B 7 14 14 HOH HOH . J 5 HOH B 8 15 15 HOH HOH . J 5 HOH B 9 16 16 HOH HOH . J 5 HOH B 10 17 17 HOH HOH . J 5 HOH B 11 18 18 HOH HOH . J 5 HOH B 12 19 19 HOH HOH . J 5 HOH B 13 20 20 HOH HOH . J 5 HOH B 14 21 21 HOH HOH . J 5 HOH B 15 22 22 HOH HOH . J 5 HOH B 16 23 23 HOH HOH . J 5 HOH B 17 24 24 HOH HOH . J 5 HOH B 18 25 25 HOH HOH . J 5 HOH B 19 26 26 HOH HOH . J 5 HOH B 20 27 27 HOH HOH . J 5 HOH B 21 28 28 HOH HOH . J 5 HOH B 22 29 29 HOH HOH . J 5 HOH B 23 30 30 HOH HOH . J 5 HOH B 24 31 31 HOH HOH . J 5 HOH B 25 32 32 HOH HOH . J 5 HOH B 26 33 33 HOH HOH . J 5 HOH B 27 34 34 HOH HOH . J 5 HOH B 28 35 35 HOH HOH . J 5 HOH B 29 36 36 HOH HOH . J 5 HOH B 30 37 37 HOH HOH . J 5 HOH B 31 38 38 HOH HOH . J 5 HOH B 32 39 39 HOH HOH . J 5 HOH B 33 40 40 HOH HOH . J 5 HOH B 34 41 41 HOH HOH . J 5 HOH B 35 42 42 HOH HOH . J 5 HOH B 36 43 43 HOH HOH . J 5 HOH B 37 44 44 HOH HOH . J 5 HOH B 38 67 67 HOH HOH . J 5 HOH B 39 79 79 HOH HOH . J 5 HOH B 40 80 80 HOH HOH . J 5 HOH B 41 81 81 HOH HOH . J 5 HOH B 42 82 82 HOH HOH . J 5 HOH B 43 83 83 HOH HOH . J 5 HOH B 44 84 84 HOH HOH . J 5 HOH B 45 85 85 HOH HOH . J 5 HOH B 46 86 86 HOH HOH . J 5 HOH B 47 87 87 HOH HOH . J 5 HOH B 48 88 88 HOH HOH . J 5 HOH B 49 89 89 HOH HOH . J 5 HOH B 50 90 90 HOH HOH . J 5 HOH B 51 91 91 HOH HOH . J 5 HOH B 52 540 4 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 88.083 _atom_site.Cartn_y 21.091 _atom_site.Cartn_z 18.473 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 69.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 541 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #