data_3KEG # _model_server_result.job_id -kT6QaVXWK_OKTXi-uua1A _model_server_result.datetime_utc '2024-11-15 06:02:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3keg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":216}' # _entry.id 3KEG # _exptl.entry_id 3KEG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KEG _cell.length_a 82.81 _cell.length_b 82.81 _cell.length_c 108.91 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KEG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 183 n n C1 C2 GOL sing 184 n n C1 H11 GOL sing 185 n n C1 H12 GOL sing 186 n n O1 HO1 GOL sing 187 n n C2 O2 GOL sing 188 n n C2 C3 GOL sing 189 n n C2 H2 GOL sing 190 n n O2 HO2 GOL sing 191 n n C3 O3 GOL sing 192 n n C3 H31 GOL sing 193 n n C3 H32 GOL sing 194 n n O3 HO3 GOL sing 195 n n # _atom_sites.entry_id 3KEG _atom_sites.fract_transf_matrix[1][1] 0.012076 _atom_sites.fract_transf_matrix[1][2] 0.006972 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013944 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 213 1 FMN FMN . D 3 MRE A 1 214 1 MRE MRE . E 3 MRE A 1 215 1 MRE MRE . F 4 GOL A 1 216 1 GOL GOL . G 2 FMN B 1 213 1 FMN FMN . H 5 HOH A 1 217 217 HOH HOH . H 5 HOH A 2 218 1 HOH HOH . H 5 HOH A 3 219 2 HOH HOH . H 5 HOH A 4 220 3 HOH HOH . H 5 HOH A 5 221 5 HOH HOH . H 5 HOH A 6 222 6 HOH HOH . H 5 HOH A 7 223 7 HOH HOH . H 5 HOH A 8 224 8 HOH HOH . H 5 HOH A 9 225 9 HOH HOH . H 5 HOH A 10 226 11 HOH HOH . H 5 HOH A 11 227 15 HOH HOH . H 5 HOH A 12 228 17 HOH HOH . H 5 HOH A 13 229 18 HOH HOH . H 5 HOH A 14 230 19 HOH HOH . H 5 HOH A 15 231 20 HOH HOH . H 5 HOH A 16 232 26 HOH HOH . H 5 HOH A 17 233 27 HOH HOH . H 5 HOH A 18 234 30 HOH HOH . H 5 HOH A 19 235 32 HOH HOH . H 5 HOH A 20 236 36 HOH HOH . H 5 HOH A 21 237 38 HOH HOH . H 5 HOH A 22 238 40 HOH HOH . H 5 HOH A 23 239 41 HOH HOH . H 5 HOH A 24 240 47 HOH HOH . H 5 HOH A 25 241 48 HOH HOH . H 5 HOH A 26 242 49 HOH HOH . H 5 HOH A 27 243 1 HOH HOH . H 5 HOH A 28 244 2 HOH HOH . H 5 HOH A 29 245 3 HOH HOH . H 5 HOH A 30 246 4 HOH HOH . H 5 HOH A 31 247 5 HOH HOH . H 5 HOH A 32 248 6 HOH HOH . H 5 HOH A 33 249 7 HOH HOH . H 5 HOH A 34 250 11 HOH HOH . H 5 HOH A 35 251 12 HOH HOH . H 5 HOH A 36 252 17 HOH HOH . H 5 HOH A 37 253 21 HOH HOH . H 5 HOH A 38 254 22 HOH HOH . H 5 HOH A 39 255 23 HOH HOH . H 5 HOH A 40 256 24 HOH HOH . H 5 HOH A 41 257 26 HOH HOH . H 5 HOH A 42 258 27 HOH HOH . H 5 HOH A 43 259 29 HOH HOH . H 5 HOH A 44 260 31 HOH HOH . H 5 HOH A 45 261 33 HOH HOH . H 5 HOH A 46 262 34 HOH HOH . H 5 HOH A 47 263 37 HOH HOH . H 5 HOH A 48 264 38 HOH HOH . H 5 HOH A 49 265 40 HOH HOH . H 5 HOH A 50 266 41 HOH HOH . H 5 HOH A 51 267 42 HOH HOH . H 5 HOH A 52 268 43 HOH HOH . H 5 HOH A 53 269 45 HOH HOH . H 5 HOH A 54 270 47 HOH HOH . H 5 HOH A 55 271 49 HOH HOH . H 5 HOH A 56 272 51 HOH HOH . H 5 HOH A 57 273 53 HOH HOH . H 5 HOH A 58 274 56 HOH HOH . H 5 HOH A 59 275 57 HOH HOH . H 5 HOH A 60 276 58 HOH HOH . H 5 HOH A 61 277 59 HOH HOH . H 5 HOH A 62 278 63 HOH HOH . H 5 HOH A 63 279 66 HOH HOH . H 5 HOH A 64 280 68 HOH HOH . H 5 HOH A 65 281 70 HOH HOH . H 5 HOH A 66 282 72 HOH HOH . H 5 HOH A 67 283 73 HOH HOH . H 5 HOH A 68 284 74 HOH HOH . H 5 HOH A 69 285 75 HOH HOH . H 5 HOH A 70 286 76 HOH HOH . H 5 HOH A 71 287 77 HOH HOH . H 5 HOH A 72 288 78 HOH HOH . H 5 HOH A 73 289 79 HOH HOH . H 5 HOH A 74 290 80 HOH HOH . H 5 HOH A 75 291 84 HOH HOH . H 5 HOH A 76 292 87 HOH HOH . H 5 HOH A 77 293 89 HOH HOH . H 5 HOH A 78 294 91 HOH HOH . H 5 HOH A 79 295 94 HOH HOH . H 5 HOH A 80 296 95 HOH HOH . H 5 HOH A 81 297 99 HOH HOH . H 5 HOH A 82 298 100 HOH HOH . H 5 HOH A 83 299 101 HOH HOH . H 5 HOH A 84 300 102 HOH HOH . H 5 HOH A 85 301 103 HOH HOH . H 5 HOH A 86 302 104 HOH HOH . H 5 HOH A 87 303 105 HOH HOH . H 5 HOH A 88 304 106 HOH HOH . H 5 HOH A 89 305 111 HOH HOH . H 5 HOH A 90 306 112 HOH HOH . H 5 HOH A 91 307 113 HOH HOH . H 5 HOH A 92 308 114 HOH HOH . H 5 HOH A 93 309 115 HOH HOH . H 5 HOH A 94 310 116 HOH HOH . H 5 HOH A 95 311 117 HOH HOH . H 5 HOH A 96 312 118 HOH HOH . H 5 HOH A 97 313 119 HOH HOH . H 5 HOH A 98 314 120 HOH HOH . H 5 HOH A 99 315 121 HOH HOH . H 5 HOH A 100 316 122 HOH HOH . H 5 HOH A 101 317 123 HOH HOH . H 5 HOH A 102 318 125 HOH HOH . H 5 HOH A 103 319 127 HOH HOH . H 5 HOH A 104 320 133 HOH HOH . H 5 HOH A 105 321 135 HOH HOH . H 5 HOH A 106 322 136 HOH HOH . H 5 HOH A 107 323 146 HOH HOH . H 5 HOH A 108 324 147 HOH HOH . H 5 HOH A 109 325 148 HOH HOH . H 5 HOH A 110 326 149 HOH HOH . H 5 HOH A 111 327 150 HOH HOH . H 5 HOH A 112 328 153 HOH HOH . H 5 HOH A 113 329 155 HOH HOH . H 5 HOH A 114 330 158 HOH HOH . H 5 HOH A 115 331 159 HOH HOH . H 5 HOH A 116 332 161 HOH HOH . H 5 HOH A 117 333 162 HOH HOH . H 5 HOH A 118 334 165 HOH HOH . H 5 HOH A 119 335 168 HOH HOH . H 5 HOH A 120 336 170 HOH HOH . H 5 HOH A 121 337 171 HOH HOH . H 5 HOH A 122 338 172 HOH HOH . H 5 HOH A 123 339 176 HOH HOH . H 5 HOH A 124 340 178 HOH HOH . H 5 HOH A 125 341 179 HOH HOH . H 5 HOH A 126 342 180 HOH HOH . H 5 HOH A 127 343 181 HOH HOH . H 5 HOH A 128 344 182 HOH HOH . H 5 HOH A 129 345 185 HOH HOH . H 5 HOH A 130 346 187 HOH HOH . H 5 HOH A 131 347 190 HOH HOH . H 5 HOH A 132 348 191 HOH HOH . H 5 HOH A 133 349 195 HOH HOH . H 5 HOH A 134 350 196 HOH HOH . H 5 HOH A 135 351 198 HOH HOH . H 5 HOH A 136 352 199 HOH HOH . H 5 HOH A 137 353 200 HOH HOH . H 5 HOH A 138 354 202 HOH HOH . H 5 HOH A 139 355 204 HOH HOH . H 5 HOH A 140 356 206 HOH HOH . H 5 HOH A 141 357 207 HOH HOH . H 5 HOH A 142 358 208 HOH HOH . H 5 HOH A 143 359 209 HOH HOH . H 5 HOH A 144 360 211 HOH HOH . H 5 HOH A 145 361 213 HOH HOH . H 5 HOH A 146 362 214 HOH HOH . H 5 HOH A 147 363 215 HOH HOH . H 5 HOH A 148 364 216 HOH HOH . H 5 HOH A 149 365 1 HOH HOH . I 5 HOH B 1 214 4 HOH HOH . I 5 HOH B 2 215 10 HOH HOH . I 5 HOH B 3 216 12 HOH HOH . I 5 HOH B 4 217 13 HOH HOH . I 5 HOH B 5 218 14 HOH HOH . I 5 HOH B 6 219 16 HOH HOH . I 5 HOH B 7 220 21 HOH HOH . I 5 HOH B 8 221 22 HOH HOH . I 5 HOH B 9 222 23 HOH HOH . I 5 HOH B 10 223 24 HOH HOH . I 5 HOH B 11 224 25 HOH HOH . I 5 HOH B 12 225 28 HOH HOH . I 5 HOH B 13 226 29 HOH HOH . I 5 HOH B 14 227 31 HOH HOH . I 5 HOH B 15 228 33 HOH HOH . I 5 HOH B 16 229 34 HOH HOH . I 5 HOH B 17 230 35 HOH HOH . I 5 HOH B 18 231 37 HOH HOH . I 5 HOH B 19 232 39 HOH HOH . I 5 HOH B 20 233 42 HOH HOH . I 5 HOH B 21 234 43 HOH HOH . I 5 HOH B 22 235 44 HOH HOH . I 5 HOH B 23 236 45 HOH HOH . I 5 HOH B 24 237 46 HOH HOH . I 5 HOH B 25 238 50 HOH HOH . I 5 HOH B 26 239 51 HOH HOH . I 5 HOH B 27 240 8 HOH HOH . I 5 HOH B 28 241 9 HOH HOH . I 5 HOH B 29 242 10 HOH HOH . I 5 HOH B 30 243 13 HOH HOH . I 5 HOH B 31 244 14 HOH HOH . I 5 HOH B 32 245 15 HOH HOH . I 5 HOH B 33 246 16 HOH HOH . I 5 HOH B 34 247 18 HOH HOH . I 5 HOH B 35 248 19 HOH HOH . I 5 HOH B 36 249 20 HOH HOH . I 5 HOH B 37 250 25 HOH HOH . I 5 HOH B 38 251 28 HOH HOH . I 5 HOH B 39 252 30 HOH HOH . I 5 HOH B 40 253 32 HOH HOH . I 5 HOH B 41 254 35 HOH HOH . I 5 HOH B 42 255 36 HOH HOH . I 5 HOH B 43 256 39 HOH HOH . I 5 HOH B 44 257 44 HOH HOH . I 5 HOH B 45 258 46 HOH HOH . I 5 HOH B 46 259 48 HOH HOH . I 5 HOH B 47 260 50 HOH HOH . I 5 HOH B 48 261 52 HOH HOH . I 5 HOH B 49 262 54 HOH HOH . I 5 HOH B 50 263 55 HOH HOH . I 5 HOH B 51 264 60 HOH HOH . I 5 HOH B 52 265 61 HOH HOH . I 5 HOH B 53 266 62 HOH HOH . I 5 HOH B 54 267 64 HOH HOH . I 5 HOH B 55 268 65 HOH HOH . I 5 HOH B 56 269 67 HOH HOH . I 5 HOH B 57 270 69 HOH HOH . I 5 HOH B 58 271 71 HOH HOH . I 5 HOH B 59 272 81 HOH HOH . I 5 HOH B 60 273 82 HOH HOH . I 5 HOH B 61 274 83 HOH HOH . I 5 HOH B 62 275 85 HOH HOH . I 5 HOH B 63 276 86 HOH HOH . I 5 HOH B 64 277 88 HOH HOH . I 5 HOH B 65 278 90 HOH HOH . I 5 HOH B 66 279 92 HOH HOH . I 5 HOH B 67 280 93 HOH HOH . I 5 HOH B 68 281 96 HOH HOH . I 5 HOH B 69 282 97 HOH HOH . I 5 HOH B 70 283 98 HOH HOH . I 5 HOH B 71 284 107 HOH HOH . I 5 HOH B 72 285 108 HOH HOH . I 5 HOH B 73 286 109 HOH HOH . I 5 HOH B 74 287 110 HOH HOH . I 5 HOH B 75 288 124 HOH HOH . I 5 HOH B 76 289 126 HOH HOH . I 5 HOH B 77 290 128 HOH HOH . I 5 HOH B 78 291 129 HOH HOH . I 5 HOH B 79 292 130 HOH HOH . I 5 HOH B 80 293 131 HOH HOH . I 5 HOH B 81 294 132 HOH HOH . I 5 HOH B 82 295 134 HOH HOH . I 5 HOH B 83 296 137 HOH HOH . I 5 HOH B 84 297 138 HOH HOH . I 5 HOH B 85 298 139 HOH HOH . I 5 HOH B 86 299 140 HOH HOH . I 5 HOH B 87 300 141 HOH HOH . I 5 HOH B 88 301 142 HOH HOH . I 5 HOH B 89 302 143 HOH HOH . I 5 HOH B 90 303 144 HOH HOH . I 5 HOH B 91 304 145 HOH HOH . I 5 HOH B 92 305 151 HOH HOH . I 5 HOH B 93 306 152 HOH HOH . I 5 HOH B 94 307 154 HOH HOH . I 5 HOH B 95 308 156 HOH HOH . I 5 HOH B 96 309 157 HOH HOH . I 5 HOH B 97 310 160 HOH HOH . I 5 HOH B 98 311 163 HOH HOH . I 5 HOH B 99 312 164 HOH HOH . I 5 HOH B 100 313 166 HOH HOH . I 5 HOH B 101 314 167 HOH HOH . I 5 HOH B 102 315 169 HOH HOH . I 5 HOH B 103 316 173 HOH HOH . I 5 HOH B 104 317 174 HOH HOH . I 5 HOH B 105 318 175 HOH HOH . I 5 HOH B 106 319 177 HOH HOH . I 5 HOH B 107 320 183 HOH HOH . I 5 HOH B 108 321 184 HOH HOH . I 5 HOH B 109 322 186 HOH HOH . I 5 HOH B 110 323 188 HOH HOH . I 5 HOH B 111 324 189 HOH HOH . I 5 HOH B 112 325 192 HOH HOH . I 5 HOH B 113 326 193 HOH HOH . I 5 HOH B 114 327 194 HOH HOH . I 5 HOH B 115 328 197 HOH HOH . I 5 HOH B 116 329 201 HOH HOH . I 5 HOH B 117 330 203 HOH HOH . I 5 HOH B 118 331 205 HOH HOH . I 5 HOH B 119 332 210 HOH HOH . I 5 HOH B 120 333 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 -6.791 -12.627 -1.643 0.5 63.41 ? C1 GOL 216 A 1 HETATM 2 O O1 GOL . . . F 4 -8.052 -12.853 -2.295 0.5 64.2 ? O1 GOL 216 A 1 HETATM 3 C C2 GOL . . . F 4 -6.259 -13.648 -0.588 0.5 57.89 ? C2 GOL 216 A 1 HETATM 4 O O2 GOL . . . F 4 -6.677 -14.975 -0.294 0.5 56.17 ? O2 GOL 216 A 1 HETATM 5 C C3 GOL . . . F 4 -4.861 -13.221 -0.185 0.5 59.51 ? C3 GOL 216 A 1 HETATM 6 O O3 GOL . . . F 4 -3.962 -14.222 -0.536 0.5 66.94 ? O3 GOL 216 A 1 HETATM 7 H H11 GOL . . . F 4 -6.845 -11.653 -1.157 0.5 76.09 ? H11 GOL 216 A 1 HETATM 8 H H12 GOL . . . F 4 -6.033 -12.537 -2.421 0.5 76.09 ? H12 GOL 216 A 1 HETATM 9 H HO1 GOL . . . F 4 -8.262 -12.089 -2.872 0.5 77.04 ? HO1 GOL 216 A 1 HETATM 10 H H2 GOL . . . F 4 -6.782 -13.195 0.254 0.5 69.47 ? H2 GOL 216 A 1 HETATM 11 H HO2 GOL . . . F 4 -6.075 -15.612 -0.733 0.5 67.4 ? HO2 GOL 216 A 1 HETATM 12 H H31 GOL . . . F 4 -4.822 -13.048 0.89 0.5 71.41 ? H31 GOL 216 A 1 HETATM 13 H H32 GOL . . . F 4 -4.597 -12.293 -0.691 0.5 71.41 ? H32 GOL 216 A 1 HETATM 14 H HO3 GOL . . . F 4 -3.451 -14.494 0.256 0.5 80.33 ? HO3 GOL 216 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #