data_3KEH # _model_server_result.job_id pU6qL1TSqEZdzXbo-kqJyw _model_server_result.datetime_utc '2024-11-09 02:10:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3keh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1502}' # _entry.id 3KEH # _exptl.entry_id 3KEH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KEH _cell.length_a 107.83 _cell.length_b 285.92 _cell.length_c 92 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KEH _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 1 1 B,C,L,M,N,O,P,R 2 1 A,D,E,F,G,H,I,J,K,Q 2 2 B,C,L,M,N,O,P,R 3 1,3 A,D,E,F,G,H,I,J,K,Q 3 4,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_455 x-1/2,-y+1/2,-z 1 0 0 0 -1 0 0 0 -1 -53.915 142.96 0 3 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 46 4 'crystal symmetry operation' 6_555 -x+1/2,-y+1/2,z+1/2 -1 0 0 0 -1 0 0 0 1 53.915 142.96 46 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 L N N ? 4 M N N ? 4 N N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG B 1503 NAG 2 n C NAG 2 C 2 NAG B 1504 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 16 A CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf2 A SG CYS 18 A CYS 18 1_555 A SG CYS 23 A CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf3 B SG CYS 4 B CYS 4 1_555 B SG CYS 16 B CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? disulf ? disulf4 B SG CYS 18 B CYS 18 1_555 B SG CYS 23 B CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? covale ? covale1 B ND2 ASN 19 B ASN 19 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale2 B ND2 ASN 146 B ASN 146 1_555 O C1 NAG . B NAG 1505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 363 n n S O2 SO4 doub 364 n n S O3 SO4 sing 365 n n S O4 SO4 sing 366 n n # _atom_sites.entry_id 3KEH _atom_sites.fract_transf_matrix[1][1] 0.009274 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NDG A 1 1997 1997 NDG NDG . E 4 SO4 A 1 1501 1501 SO4 SO4 . F 4 SO4 A 1 1502 1502 SO4 SO4 . G 4 SO4 A 1 1504 1504 SO4 SO4 . H 4 SO4 A 1 1506 1506 SO4 SO4 . I 4 SO4 A 1 1507 1507 SO4 SO4 . J 5 GOL A 1 1509 1509 GOL GOL . K 6 NAG A 1 1998 1998 NAG NAG . L 4 SO4 B 1 1499 1499 SO4 SO4 . M 4 SO4 B 1 1500 1500 SO4 SO4 . N 4 SO4 B 1 1502 1502 SO4 SO4 . O 6 NAG B 1 1505 1505 NAG NAG . P 5 GOL B 1 498 1503 GOL GOL . Q 7 HOH A 1 498 1 HOH HOH . Q 7 HOH A 2 499 15 HOH HOH . Q 7 HOH A 3 500 40 HOH HOH . Q 7 HOH A 4 501 42 HOH HOH . Q 7 HOH A 5 502 44 HOH HOH . Q 7 HOH A 6 503 63 HOH HOH . Q 7 HOH A 7 504 112 HOH HOH . Q 7 HOH A 8 505 201 HOH HOH . Q 7 HOH A 9 506 230 HOH HOH . Q 7 HOH A 10 507 246 HOH HOH . Q 7 HOH A 11 508 10 HOH HOH . Q 7 HOH A 12 509 65 HOH HOH . Q 7 HOH A 13 510 67 HOH HOH . Q 7 HOH A 14 511 119 HOH HOH . Q 7 HOH A 15 512 35 HOH HOH . Q 7 HOH A 16 513 57 HOH HOH . R 7 HOH B 1 499 3 HOH HOH . R 7 HOH B 2 500 4 HOH HOH . R 7 HOH B 3 501 17 HOH HOH . R 7 HOH B 4 502 21 HOH HOH . R 7 HOH B 5 503 50 HOH HOH . R 7 HOH B 6 504 51 HOH HOH . R 7 HOH B 7 505 90 HOH HOH . R 7 HOH B 8 506 104 HOH HOH . R 7 HOH B 9 507 116 HOH HOH . R 7 HOH B 10 508 122 HOH HOH . R 7 HOH B 11 509 123 HOH HOH . R 7 HOH B 12 510 124 HOH HOH . R 7 HOH B 13 511 128 HOH HOH . R 7 HOH B 14 512 167 HOH HOH . R 7 HOH B 15 513 212 HOH HOH . R 7 HOH B 16 514 215 HOH HOH . R 7 HOH B 17 515 229 HOH HOH . R 7 HOH B 18 516 236 HOH HOH . R 7 HOH B 19 517 101 HOH HOH . R 7 HOH B 20 518 139 HOH HOH . R 7 HOH B 21 519 164 HOH HOH . R 7 HOH B 22 520 177 HOH HOH . R 7 HOH B 23 521 2 HOH HOH . R 7 HOH B 24 522 46 HOH HOH . R 7 HOH B 25 523 115 HOH HOH . R 7 HOH B 26 524 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . F 4 26.631 80.461 9.15 1 126.02 ? S SO4 1502 A 1 HETATM 2 O O1 SO4 . . . F 4 26.767 81.914 9.109 1 126.44 ? O1 SO4 1502 A 1 HETATM 3 O O2 SO4 . . . F 4 27.902 79.83 9.52 1 125.75 ? O2 SO4 1502 A 1 HETATM 4 O O3 SO4 . . . F 4 25.607 80.115 10.13 1 126.17 ? O3 SO4 1502 A 1 HETATM 5 O O4 SO4 . . . F 4 26.205 80 7.829 1 126.45 ? O4 SO4 1502 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 5 #