data_3KES # _model_server_result.job_id xMTY8ot5-uTq4TVz-F57jw _model_server_result.datetime_utc '2024-12-21 17:45:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kes # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2}' # _entry.id 3KES # _exptl.entry_id 3KES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 22 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KES _cell.length_a 135.052 _cell.length_b 135.052 _cell.length_c 56.154 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KES _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,Y 1 1 B,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 97 A PRO 536 1_555 A N MSE 98 A MSE 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale2 A C MSE 98 A MSE 537 1_555 A N ILE 99 A ILE 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C PRO 124 A PRO 563 1_555 A N MSE 125 A MSE 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 125 A MSE 564 1_555 A N LYS 126 A LYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C SER 143 A SER 582 1_555 A N MSE 144 A MSE 583 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C MSE 144 A MSE 583 1_555 A N ARG 145 A ARG 584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C GLU 146 A GLU 585 1_555 A N MSE 147 A MSE 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale8 A C MSE 147 A MSE 586 1_555 A N ASN 148 A ASN 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale9 B C PRO 97 B PRO 536 1_555 B N MSE 98 B MSE 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 B C MSE 98 B MSE 537 1_555 B N ILE 99 B ILE 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale11 B C PRO 124 B PRO 563 1_555 B N MSE 125 B MSE 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 B C MSE 125 B MSE 564 1_555 B N LYS 126 B LYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 B C SER 143 B SER 582 1_555 B N MSE 144 B MSE 583 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale14 B C MSE 144 B MSE 583 1_555 B N ARG 145 B ARG 584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale15 B C GLU 146 B GLU 585 1_555 B N MSE 147 B MSE 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale16 B C MSE 147 B MSE 586 1_555 B N ASN 148 B ASN 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3KES _atom_sites.fract_transf_matrix[1][1] 0.007405 _atom_sites.fract_transf_matrix[1][2] 0.004275 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017808 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 2 2 EDO EDO . D 2 EDO A 1 3 3 EDO EDO . E 2 EDO A 1 4 4 EDO EDO . F 2 EDO A 1 5 5 EDO EDO . G 2 EDO A 1 7 7 EDO EDO . H 2 EDO A 1 16 16 EDO EDO . I 2 EDO B 1 1 1 EDO EDO . J 2 EDO B 1 6 6 EDO EDO . K 2 EDO B 1 8 8 EDO EDO . L 2 EDO B 1 9 9 EDO EDO . M 2 EDO B 1 10 10 EDO EDO . N 2 EDO B 1 11 11 EDO EDO . O 2 EDO B 1 12 12 EDO EDO . P 2 EDO B 1 13 13 EDO EDO . Q 2 EDO B 1 14 14 EDO EDO . R 2 EDO B 1 15 15 EDO EDO . S 2 EDO B 1 17 17 EDO EDO . T 2 EDO B 1 18 18 EDO EDO . U 2 EDO B 1 19 19 EDO EDO . V 2 EDO B 1 20 20 EDO EDO . W 2 EDO B 1 21 21 EDO EDO . X 2 EDO B 1 22 22 EDO EDO . Y 3 HOH A 1 1 1 HOH HOH . Y 3 HOH A 2 6 6 HOH HOH . Y 3 HOH A 3 10 10 HOH HOH . Y 3 HOH A 4 12 12 HOH HOH . Y 3 HOH A 5 13 13 HOH HOH . Y 3 HOH A 6 18 18 HOH HOH . Y 3 HOH A 7 30 30 HOH HOH . Y 3 HOH A 8 31 31 HOH HOH . Y 3 HOH A 9 32 32 HOH HOH . Y 3 HOH A 10 33 33 HOH HOH . Y 3 HOH A 11 36 36 HOH HOH . Y 3 HOH A 12 40 40 HOH HOH . Y 3 HOH A 13 43 43 HOH HOH . Y 3 HOH A 14 44 44 HOH HOH . Y 3 HOH A 15 45 45 HOH HOH . Y 3 HOH A 16 46 46 HOH HOH . Y 3 HOH A 17 47 47 HOH HOH . Y 3 HOH A 18 49 49 HOH HOH . Y 3 HOH A 19 50 50 HOH HOH . Y 3 HOH A 20 52 52 HOH HOH . Y 3 HOH A 21 53 53 HOH HOH . Y 3 HOH A 22 54 54 HOH HOH . Y 3 HOH A 23 55 55 HOH HOH . Y 3 HOH A 24 58 58 HOH HOH . Y 3 HOH A 25 60 60 HOH HOH . Y 3 HOH A 26 61 61 HOH HOH . Y 3 HOH A 27 62 62 HOH HOH . Y 3 HOH A 28 63 63 HOH HOH . Y 3 HOH A 29 64 64 HOH HOH . Y 3 HOH A 30 66 66 HOH HOH . Y 3 HOH A 31 71 71 HOH HOH . Y 3 HOH A 32 72 72 HOH HOH . Y 3 HOH A 33 74 74 HOH HOH . Y 3 HOH A 34 75 75 HOH HOH . Y 3 HOH A 35 77 77 HOH HOH . Y 3 HOH A 36 83 83 HOH HOH . Y 3 HOH A 37 85 85 HOH HOH . Y 3 HOH A 38 86 86 HOH HOH . Y 3 HOH A 39 87 87 HOH HOH . Y 3 HOH A 40 90 90 HOH HOH . Y 3 HOH A 41 94 94 HOH HOH . Y 3 HOH A 42 95 95 HOH HOH . Y 3 HOH A 43 96 96 HOH HOH . Y 3 HOH A 44 102 102 HOH HOH . Y 3 HOH A 45 105 105 HOH HOH . Y 3 HOH A 46 106 106 HOH HOH . Y 3 HOH A 47 109 109 HOH HOH . Y 3 HOH A 48 110 110 HOH HOH . Y 3 HOH A 49 112 112 HOH HOH . Y 3 HOH A 50 113 113 HOH HOH . Y 3 HOH A 51 114 114 HOH HOH . Y 3 HOH A 52 116 116 HOH HOH . Y 3 HOH A 53 117 117 HOH HOH . Y 3 HOH A 54 118 118 HOH HOH . Y 3 HOH A 55 119 119 HOH HOH . Y 3 HOH A 56 120 120 HOH HOH . Y 3 HOH A 57 122 122 HOH HOH . Y 3 HOH A 58 123 123 HOH HOH . Y 3 HOH A 59 124 124 HOH HOH . Y 3 HOH A 60 125 125 HOH HOH . Y 3 HOH A 61 132 132 HOH HOH . Y 3 HOH A 62 133 133 HOH HOH . Y 3 HOH A 63 134 134 HOH HOH . Y 3 HOH A 64 135 135 HOH HOH . Y 3 HOH A 65 138 138 HOH HOH . Y 3 HOH A 66 139 139 HOH HOH . Y 3 HOH A 67 140 140 HOH HOH . Y 3 HOH A 68 141 141 HOH HOH . Y 3 HOH A 69 142 142 HOH HOH . Y 3 HOH A 70 143 143 HOH HOH . Y 3 HOH A 71 144 144 HOH HOH . Y 3 HOH A 72 145 145 HOH HOH . Y 3 HOH A 73 146 146 HOH HOH . Y 3 HOH A 74 147 147 HOH HOH . Y 3 HOH A 75 151 151 HOH HOH . Y 3 HOH A 76 155 155 HOH HOH . Y 3 HOH A 77 156 156 HOH HOH . Y 3 HOH A 78 159 159 HOH HOH . Y 3 HOH A 79 614 2 HOH HOH . Y 3 HOH A 80 615 5 HOH HOH . Y 3 HOH A 81 616 7 HOH HOH . Z 3 HOH B 1 3 3 HOH HOH . Z 3 HOH B 2 4 4 HOH HOH . Z 3 HOH B 3 16 16 HOH HOH . Z 3 HOH B 4 23 23 HOH HOH . Z 3 HOH B 5 24 24 HOH HOH . Z 3 HOH B 6 25 25 HOH HOH . Z 3 HOH B 7 26 26 HOH HOH . Z 3 HOH B 8 27 27 HOH HOH . Z 3 HOH B 9 28 28 HOH HOH . Z 3 HOH B 10 29 29 HOH HOH . Z 3 HOH B 11 34 34 HOH HOH . Z 3 HOH B 12 35 35 HOH HOH . Z 3 HOH B 13 37 37 HOH HOH . Z 3 HOH B 14 38 38 HOH HOH . Z 3 HOH B 15 39 39 HOH HOH . Z 3 HOH B 16 41 41 HOH HOH . Z 3 HOH B 17 42 42 HOH HOH . Z 3 HOH B 18 48 48 HOH HOH . Z 3 HOH B 19 51 51 HOH HOH . Z 3 HOH B 20 56 56 HOH HOH . Z 3 HOH B 21 57 57 HOH HOH . Z 3 HOH B 22 59 59 HOH HOH . Z 3 HOH B 23 65 65 HOH HOH . Z 3 HOH B 24 67 67 HOH HOH . Z 3 HOH B 25 68 68 HOH HOH . Z 3 HOH B 26 69 69 HOH HOH . Z 3 HOH B 27 70 70 HOH HOH . Z 3 HOH B 28 73 73 HOH HOH . Z 3 HOH B 29 76 76 HOH HOH . Z 3 HOH B 30 78 78 HOH HOH . Z 3 HOH B 31 79 79 HOH HOH . Z 3 HOH B 32 80 80 HOH HOH . Z 3 HOH B 33 81 81 HOH HOH . Z 3 HOH B 34 82 82 HOH HOH . Z 3 HOH B 35 84 84 HOH HOH . Z 3 HOH B 36 88 88 HOH HOH . Z 3 HOH B 37 89 89 HOH HOH . Z 3 HOH B 38 91 91 HOH HOH . Z 3 HOH B 39 92 92 HOH HOH . Z 3 HOH B 40 93 93 HOH HOH . Z 3 HOH B 41 97 97 HOH HOH . Z 3 HOH B 42 98 98 HOH HOH . Z 3 HOH B 43 99 99 HOH HOH . Z 3 HOH B 44 100 100 HOH HOH . Z 3 HOH B 45 101 101 HOH HOH . Z 3 HOH B 46 103 103 HOH HOH . Z 3 HOH B 47 104 104 HOH HOH . Z 3 HOH B 48 107 107 HOH HOH . Z 3 HOH B 49 108 108 HOH HOH . Z 3 HOH B 50 111 111 HOH HOH . Z 3 HOH B 51 115 115 HOH HOH . Z 3 HOH B 52 121 121 HOH HOH . Z 3 HOH B 53 126 126 HOH HOH . Z 3 HOH B 54 127 127 HOH HOH . Z 3 HOH B 55 128 128 HOH HOH . Z 3 HOH B 56 129 129 HOH HOH . Z 3 HOH B 57 130 130 HOH HOH . Z 3 HOH B 58 131 131 HOH HOH . Z 3 HOH B 59 136 136 HOH HOH . Z 3 HOH B 60 137 137 HOH HOH . Z 3 HOH B 61 148 148 HOH HOH . Z 3 HOH B 62 149 149 HOH HOH . Z 3 HOH B 63 150 150 HOH HOH . Z 3 HOH B 64 152 152 HOH HOH . Z 3 HOH B 65 153 153 HOH HOH . Z 3 HOH B 66 154 154 HOH HOH . Z 3 HOH B 67 157 157 HOH HOH . Z 3 HOH B 68 158 158 HOH HOH . Z 3 HOH B 69 160 160 HOH HOH . Z 3 HOH B 70 161 161 HOH HOH . Z 3 HOH B 71 614 8 HOH HOH . Z 3 HOH B 72 615 9 HOH HOH . Z 3 HOH B 73 616 11 HOH HOH . Z 3 HOH B 74 617 14 HOH HOH . Z 3 HOH B 75 618 15 HOH HOH . Z 3 HOH B 76 619 17 HOH HOH . Z 3 HOH B 77 620 19 HOH HOH . Z 3 HOH B 78 621 20 HOH HOH . Z 3 HOH B 79 622 21 HOH HOH . Z 3 HOH B 80 623 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 -16.692 106.502 -2.842 1 45.38 ? C1 EDO 2 A 1 HETATM 2 O O1 EDO . . . C 2 -17.974 106.541 -2.251 1 41.71 ? O1 EDO 2 A 1 HETATM 3 C C2 EDO . . . C 2 -16.305 107.896 -3.28 1 49.01 ? C2 EDO 2 A 1 HETATM 4 O O2 EDO . . . C 2 -15.558 107.746 -4.48 1 52.14 ? O2 EDO 2 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #