data_3KF0 # _model_server_result.job_id zzxkvsmZfrE7_MHXH37VTQ _model_server_result.datetime_utc '2024-11-25 07:55:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kf0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 3KF0 # _exptl.entry_id 3KF0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 114.185 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S,2S)-2-methylcyclohexanol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KF0 _cell.length_a 59.518 _cell.length_b 85.91 _cell.length_c 46.44 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KF0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 94 A GLY 94 1_555 H K K . A K 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc2 A OG1 THR 96 A THR 96 1_555 H K K . A K 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.978 ? metalc ? metalc3 A O ASN 98 A ASN 98 1_555 J K K . B K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc4 H K K . A K 307 1_555 B O ASN 98 B ASN 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.195 ? metalc ? metalc5 B O GLY 94 B GLY 94 1_555 J K K . B K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc6 B OG1 THR 96 B THR 96 1_555 J K K . B K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.065 ? # _chem_comp.formula 'C7 H14 O' _chem_comp.formula_weight 114.185 _chem_comp.id 4DX _chem_comp.mon_nstd_flag . _chem_comp.name (1S,2S)-2-methylcyclohexanol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms trans-2-methylcyclohexanol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 4DX sing 134 n n C2 C3 4DX sing 135 n n C2 C7 4DX sing 136 n n C3 C4 4DX sing 137 n n C4 C5 4DX sing 138 n n C5 C6 4DX sing 139 n n C6 C7 4DX sing 140 n n C7 O8 4DX sing 141 n n C1 H1 4DX sing 142 n n C1 H1A 4DX sing 143 n n C1 H1B 4DX sing 144 n n C2 H2 4DX sing 145 n n C3 H3 4DX sing 146 n n C3 H3A 4DX sing 147 n n C4 H4 4DX sing 148 n n C4 H4A 4DX sing 149 n n C5 H5 4DX sing 150 n n C5 H5A 4DX sing 151 n n C6 H6 4DX sing 152 n n C6 H6A 4DX sing 153 n n C7 H7 4DX sing 154 n n O8 HO8 4DX sing 155 n n # _atom_sites.entry_id 3KF0 _atom_sites.fract_transf_matrix[1][1] 0.016802 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01164 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021533 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3TL A 1 200 200 3TL 3TL . D 3 4DX A 1 201 201 4DX 4DX . E 4 DMS A 1 301 301 DMS DMS . F 4 DMS A 1 304 304 DMS DMS . G 4 DMS A 1 305 305 DMS DMS . H 5 K A 1 307 307 K K . I 6 BME B 1 300 300 BME BME . J 5 K B 1 306 306 K K . K 7 HOH A 1 206 206 HOH HOH . K 7 HOH A 2 207 207 HOH HOH . K 7 HOH A 3 208 337 HOH HOH . K 7 HOH A 4 210 210 HOH HOH . K 7 HOH A 5 211 211 HOH HOH . K 7 HOH A 6 215 215 HOH HOH . K 7 HOH A 7 221 221 HOH HOH . K 7 HOH A 8 230 230 HOH HOH . K 7 HOH A 9 231 231 HOH HOH . K 7 HOH A 10 236 236 HOH HOH . K 7 HOH A 11 237 237 HOH HOH . K 7 HOH A 12 244 244 HOH HOH . K 7 HOH A 13 248 248 HOH HOH . K 7 HOH A 14 250 250 HOH HOH . K 7 HOH A 15 251 251 HOH HOH . K 7 HOH A 16 253 253 HOH HOH . K 7 HOH A 17 256 256 HOH HOH . K 7 HOH A 18 260 260 HOH HOH . K 7 HOH A 19 262 262 HOH HOH . K 7 HOH A 20 263 263 HOH HOH . K 7 HOH A 21 264 264 HOH HOH . K 7 HOH A 22 270 270 HOH HOH . K 7 HOH A 23 271 271 HOH HOH . K 7 HOH A 24 274 274 HOH HOH . K 7 HOH A 25 279 279 HOH HOH . K 7 HOH A 26 281 281 HOH HOH . K 7 HOH A 27 284 284 HOH HOH . K 7 HOH A 28 286 286 HOH HOH . K 7 HOH A 29 287 287 HOH HOH . K 7 HOH A 30 288 288 HOH HOH . K 7 HOH A 31 289 289 HOH HOH . K 7 HOH A 32 292 292 HOH HOH . K 7 HOH A 33 294 294 HOH HOH . K 7 HOH A 34 296 296 HOH HOH . K 7 HOH A 35 300 300 HOH HOH . K 7 HOH A 36 306 306 HOH HOH . K 7 HOH A 37 308 308 HOH HOH . K 7 HOH A 38 318 318 HOH HOH . K 7 HOH A 39 319 319 HOH HOH . K 7 HOH A 40 320 320 HOH HOH . K 7 HOH A 41 321 321 HOH HOH . K 7 HOH A 42 324 324 HOH HOH . K 7 HOH A 43 333 333 HOH HOH . K 7 HOH A 44 334 334 HOH HOH . K 7 HOH A 45 335 335 HOH HOH . K 7 HOH A 46 336 336 HOH HOH . K 7 HOH A 47 337 305 HOH HOH . K 7 HOH A 48 339 339 HOH HOH . K 7 HOH A 49 342 342 HOH HOH . K 7 HOH A 50 346 346 HOH HOH . K 7 HOH A 51 347 347 HOH HOH . K 7 HOH A 52 349 349 HOH HOH . K 7 HOH A 53 350 350 HOH HOH . K 7 HOH A 54 351 351 HOH HOH . K 7 HOH A 55 352 352 HOH HOH . K 7 HOH A 56 354 354 HOH HOH . K 7 HOH A 57 356 356 HOH HOH . K 7 HOH A 58 361 361 HOH HOH . K 7 HOH A 59 362 362 HOH HOH . K 7 HOH A 60 363 363 HOH HOH . K 7 HOH A 61 364 364 HOH HOH . K 7 HOH A 62 365 365 HOH HOH . K 7 HOH A 63 366 366 HOH HOH . K 7 HOH A 64 368 368 HOH HOH . K 7 HOH A 65 370 370 HOH HOH . K 7 HOH A 66 373 373 HOH HOH . K 7 HOH A 67 374 374 HOH HOH . K 7 HOH A 68 376 376 HOH HOH . K 7 HOH A 69 379 379 HOH HOH . K 7 HOH A 70 383 383 HOH HOH . K 7 HOH A 71 385 385 HOH HOH . K 7 HOH A 72 388 388 HOH HOH . K 7 HOH A 73 392 392 HOH HOH . K 7 HOH A 74 394 394 HOH HOH . K 7 HOH A 75 396 396 HOH HOH . K 7 HOH A 76 398 398 HOH HOH . K 7 HOH A 77 399 399 HOH HOH . K 7 HOH A 78 403 403 HOH HOH . K 7 HOH A 79 405 405 HOH HOH . K 7 HOH A 80 406 406 HOH HOH . K 7 HOH A 81 409 409 HOH HOH . K 7 HOH A 82 410 410 HOH HOH . K 7 HOH A 83 411 411 HOH HOH . K 7 HOH A 84 412 412 HOH HOH . K 7 HOH A 85 413 413 HOH HOH . K 7 HOH A 86 415 415 HOH HOH . K 7 HOH A 87 416 416 HOH HOH . K 7 HOH A 88 417 417 HOH HOH . K 7 HOH A 89 418 418 HOH HOH . K 7 HOH A 90 419 419 HOH HOH . K 7 HOH A 91 420 420 HOH HOH . K 7 HOH A 92 421 421 HOH HOH . K 7 HOH A 93 423 423 HOH HOH . K 7 HOH A 94 430 430 HOH HOH . K 7 HOH A 95 432 432 HOH HOH . K 7 HOH A 96 433 433 HOH HOH . L 7 HOH B 1 201 201 HOH HOH . L 7 HOH B 2 203 203 HOH HOH . L 7 HOH B 3 204 204 HOH HOH . L 7 HOH B 4 205 205 HOH HOH . L 7 HOH B 5 208 208 HOH HOH . L 7 HOH B 6 212 212 HOH HOH . L 7 HOH B 7 213 213 HOH HOH . L 7 HOH B 8 214 214 HOH HOH . L 7 HOH B 9 218 218 HOH HOH . L 7 HOH B 10 220 220 HOH HOH . L 7 HOH B 11 223 223 HOH HOH . L 7 HOH B 12 224 224 HOH HOH . L 7 HOH B 13 225 225 HOH HOH . L 7 HOH B 14 226 226 HOH HOH . L 7 HOH B 15 227 227 HOH HOH . L 7 HOH B 16 232 232 HOH HOH . L 7 HOH B 17 233 233 HOH HOH . L 7 HOH B 18 234 234 HOH HOH . L 7 HOH B 19 235 235 HOH HOH . L 7 HOH B 20 238 238 HOH HOH . L 7 HOH B 21 239 239 HOH HOH . L 7 HOH B 22 240 240 HOH HOH . L 7 HOH B 23 242 242 HOH HOH . L 7 HOH B 24 243 243 HOH HOH . L 7 HOH B 25 245 245 HOH HOH . L 7 HOH B 26 246 246 HOH HOH . L 7 HOH B 27 247 247 HOH HOH . L 7 HOH B 28 249 249 HOH HOH . L 7 HOH B 29 254 254 HOH HOH . L 7 HOH B 30 257 257 HOH HOH . L 7 HOH B 31 258 258 HOH HOH . L 7 HOH B 32 259 259 HOH HOH . L 7 HOH B 33 265 265 HOH HOH . L 7 HOH B 34 266 266 HOH HOH . L 7 HOH B 35 267 267 HOH HOH . L 7 HOH B 36 269 269 HOH HOH . L 7 HOH B 37 272 272 HOH HOH . L 7 HOH B 38 273 273 HOH HOH . L 7 HOH B 39 277 277 HOH HOH . L 7 HOH B 40 278 278 HOH HOH . L 7 HOH B 41 280 280 HOH HOH . L 7 HOH B 42 282 282 HOH HOH . L 7 HOH B 43 283 283 HOH HOH . L 7 HOH B 44 285 285 HOH HOH . L 7 HOH B 45 290 290 HOH HOH . L 7 HOH B 46 291 291 HOH HOH . L 7 HOH B 47 293 293 HOH HOH . L 7 HOH B 48 297 297 HOH HOH . L 7 HOH B 49 298 298 HOH HOH . L 7 HOH B 50 299 299 HOH HOH . L 7 HOH B 51 301 301 HOH HOH . L 7 HOH B 52 303 303 HOH HOH . L 7 HOH B 53 304 304 HOH HOH . L 7 HOH B 54 307 307 HOH HOH . L 7 HOH B 55 309 309 HOH HOH . L 7 HOH B 56 310 310 HOH HOH . L 7 HOH B 57 311 311 HOH HOH . L 7 HOH B 58 313 313 HOH HOH . L 7 HOH B 59 322 322 HOH HOH . L 7 HOH B 60 323 323 HOH HOH . L 7 HOH B 61 325 325 HOH HOH . L 7 HOH B 62 326 326 HOH HOH . L 7 HOH B 63 327 327 HOH HOH . L 7 HOH B 64 328 328 HOH HOH . L 7 HOH B 65 329 329 HOH HOH . L 7 HOH B 66 330 330 HOH HOH . L 7 HOH B 67 331 331 HOH HOH . L 7 HOH B 68 332 332 HOH HOH . L 7 HOH B 69 338 338 HOH HOH . L 7 HOH B 70 340 340 HOH HOH . L 7 HOH B 71 341 341 HOH HOH . L 7 HOH B 72 343 343 HOH HOH . L 7 HOH B 73 344 344 HOH HOH . L 7 HOH B 74 345 345 HOH HOH . L 7 HOH B 75 348 348 HOH HOH . L 7 HOH B 76 353 353 HOH HOH . L 7 HOH B 77 355 355 HOH HOH . L 7 HOH B 78 357 357 HOH HOH . L 7 HOH B 79 358 358 HOH HOH . L 7 HOH B 80 359 359 HOH HOH . L 7 HOH B 81 360 360 HOH HOH . L 7 HOH B 82 367 367 HOH HOH . L 7 HOH B 83 369 369 HOH HOH . L 7 HOH B 84 371 371 HOH HOH . L 7 HOH B 85 372 372 HOH HOH . L 7 HOH B 86 375 375 HOH HOH . L 7 HOH B 87 377 377 HOH HOH . L 7 HOH B 88 378 378 HOH HOH . L 7 HOH B 89 380 380 HOH HOH . L 7 HOH B 90 381 381 HOH HOH . L 7 HOH B 91 382 382 HOH HOH . L 7 HOH B 92 384 384 HOH HOH . L 7 HOH B 93 386 386 HOH HOH . L 7 HOH B 94 387 387 HOH HOH . L 7 HOH B 95 389 389 HOH HOH . L 7 HOH B 96 390 390 HOH HOH . L 7 HOH B 97 391 391 HOH HOH . L 7 HOH B 98 393 393 HOH HOH . L 7 HOH B 99 395 395 HOH HOH . L 7 HOH B 100 397 397 HOH HOH . L 7 HOH B 101 400 400 HOH HOH . L 7 HOH B 102 401 401 HOH HOH . L 7 HOH B 103 402 402 HOH HOH . L 7 HOH B 104 404 404 HOH HOH . L 7 HOH B 105 407 407 HOH HOH . L 7 HOH B 106 408 408 HOH HOH . L 7 HOH B 107 414 414 HOH HOH . L 7 HOH B 108 422 422 HOH HOH . L 7 HOH B 109 424 424 HOH HOH . L 7 HOH B 110 425 425 HOH HOH . L 7 HOH B 111 426 426 HOH HOH . L 7 HOH B 112 427 427 HOH HOH . L 7 HOH B 113 428 428 HOH HOH . L 7 HOH B 114 429 429 HOH HOH . L 7 HOH B 115 431 431 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4DX . . . D 3 12.587 41.407 -0.455 1 61.25 ? C1 4DX 201 A 1 HETATM 2 C C2 4DX . . . D 3 12.241 40.028 0.161 1 61.01 ? C2 4DX 201 A 1 HETATM 3 C C3 4DX . . . D 3 12.514 40.134 1.64 1 60.71 ? C3 4DX 201 A 1 HETATM 4 C C4 4DX . . . D 3 11.299 40.049 2.522 1 60.6 ? C4 4DX 201 A 1 HETATM 5 C C5 4DX . . . D 3 10.105 40.854 2.082 1 60.51 ? C5 4DX 201 A 1 HETATM 6 C C6 4DX . . . D 3 9.763 40.523 0.651 1 60.76 ? C6 4DX 201 A 1 HETATM 7 C C7 4DX . . . D 3 10.785 39.773 -0.154 1 60.86 ? C7 4DX 201 A 1 HETATM 8 O O8 4DX . . . D 3 10.525 38.415 -0.386 1 60.79 ? O8 4DX 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #