data_3KF0
#
_model_server_result.job_id            6tY5jTczQx7FW28I-U7vuA 
_model_server_result.datetime_utc      '2024-11-08 05:52:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kf0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":304}' 
#
_entry.id    3KF0 
#
_exptl.entry_id    3KF0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3KF0 
_cell.length_a            59.518 
_cell.length_b            85.91 
_cell.length_c            46.44 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KF0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 94 A GLY 94 1_555 H K K . A K 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? 
metalc ? metalc2 A OG1 THR 96 A THR 96 1_555 H K K . A K 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.978 ? 
metalc ? metalc3 A O ASN 98 A ASN 98 1_555 J K K . B K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? 
metalc ? metalc4 H K K . A K 307 1_555 B O ASN 98 B ASN 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.195 ? 
metalc ? metalc5 B O GLY 94 B GLY 94 1_555 J K K . B K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? 
metalc ? metalc6 B OG1 THR 96 B THR 96 1_555 J K K . B K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.065 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 247 n n 
S C1 DMS sing 248 n n 
S C2 DMS sing 249 n n 
C1 H11 DMS sing 250 n n 
C1 H12 DMS sing 251 n n 
C1 H13 DMS sing 252 n n 
C2 H21 DMS sing 253 n n 
C2 H22 DMS sing 254 n n 
C2 H23 DMS sing 255 n n 
#
_atom_sites.entry_id                     3KF0 
_atom_sites.fract_transf_matrix[1][1]    0.016802 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01164 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021533 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 3TL A 1 200 200 3TL 3TL . 
D 3 4DX A 1 201 201 4DX 4DX . 
E 4 DMS A 1 301 301 DMS DMS . 
F 4 DMS A 1 304 304 DMS DMS . 
G 4 DMS A 1 305 305 DMS DMS . 
H 5 K A 1 307 307 K K . 
I 6 BME B 1 300 300 BME BME . 
J 5 K B 1 306 306 K K . 
K 7 HOH A 1 206 206 HOH HOH . 
K 7 HOH A 2 207 207 HOH HOH . 
K 7 HOH A 3 208 337 HOH HOH . 
K 7 HOH A 4 210 210 HOH HOH . 
K 7 HOH A 5 211 211 HOH HOH . 
K 7 HOH A 6 215 215 HOH HOH . 
K 7 HOH A 7 221 221 HOH HOH . 
K 7 HOH A 8 230 230 HOH HOH . 
K 7 HOH A 9 231 231 HOH HOH . 
K 7 HOH A 10 236 236 HOH HOH . 
K 7 HOH A 11 237 237 HOH HOH . 
K 7 HOH A 12 244 244 HOH HOH . 
K 7 HOH A 13 248 248 HOH HOH . 
K 7 HOH A 14 250 250 HOH HOH . 
K 7 HOH A 15 251 251 HOH HOH . 
K 7 HOH A 16 253 253 HOH HOH . 
K 7 HOH A 17 256 256 HOH HOH . 
K 7 HOH A 18 260 260 HOH HOH . 
K 7 HOH A 19 262 262 HOH HOH . 
K 7 HOH A 20 263 263 HOH HOH . 
K 7 HOH A 21 264 264 HOH HOH . 
K 7 HOH A 22 270 270 HOH HOH . 
K 7 HOH A 23 271 271 HOH HOH . 
K 7 HOH A 24 274 274 HOH HOH . 
K 7 HOH A 25 279 279 HOH HOH . 
K 7 HOH A 26 281 281 HOH HOH . 
K 7 HOH A 27 284 284 HOH HOH . 
K 7 HOH A 28 286 286 HOH HOH . 
K 7 HOH A 29 287 287 HOH HOH . 
K 7 HOH A 30 288 288 HOH HOH . 
K 7 HOH A 31 289 289 HOH HOH . 
K 7 HOH A 32 292 292 HOH HOH . 
K 7 HOH A 33 294 294 HOH HOH . 
K 7 HOH A 34 296 296 HOH HOH . 
K 7 HOH A 35 300 300 HOH HOH . 
K 7 HOH A 36 306 306 HOH HOH . 
K 7 HOH A 37 308 308 HOH HOH . 
K 7 HOH A 38 318 318 HOH HOH . 
K 7 HOH A 39 319 319 HOH HOH . 
K 7 HOH A 40 320 320 HOH HOH . 
K 7 HOH A 41 321 321 HOH HOH . 
K 7 HOH A 42 324 324 HOH HOH . 
K 7 HOH A 43 333 333 HOH HOH . 
K 7 HOH A 44 334 334 HOH HOH . 
K 7 HOH A 45 335 335 HOH HOH . 
K 7 HOH A 46 336 336 HOH HOH . 
K 7 HOH A 47 337 305 HOH HOH . 
K 7 HOH A 48 339 339 HOH HOH . 
K 7 HOH A 49 342 342 HOH HOH . 
K 7 HOH A 50 346 346 HOH HOH . 
K 7 HOH A 51 347 347 HOH HOH . 
K 7 HOH A 52 349 349 HOH HOH . 
K 7 HOH A 53 350 350 HOH HOH . 
K 7 HOH A 54 351 351 HOH HOH . 
K 7 HOH A 55 352 352 HOH HOH . 
K 7 HOH A 56 354 354 HOH HOH . 
K 7 HOH A 57 356 356 HOH HOH . 
K 7 HOH A 58 361 361 HOH HOH . 
K 7 HOH A 59 362 362 HOH HOH . 
K 7 HOH A 60 363 363 HOH HOH . 
K 7 HOH A 61 364 364 HOH HOH . 
K 7 HOH A 62 365 365 HOH HOH . 
K 7 HOH A 63 366 366 HOH HOH . 
K 7 HOH A 64 368 368 HOH HOH . 
K 7 HOH A 65 370 370 HOH HOH . 
K 7 HOH A 66 373 373 HOH HOH . 
K 7 HOH A 67 374 374 HOH HOH . 
K 7 HOH A 68 376 376 HOH HOH . 
K 7 HOH A 69 379 379 HOH HOH . 
K 7 HOH A 70 383 383 HOH HOH . 
K 7 HOH A 71 385 385 HOH HOH . 
K 7 HOH A 72 388 388 HOH HOH . 
K 7 HOH A 73 392 392 HOH HOH . 
K 7 HOH A 74 394 394 HOH HOH . 
K 7 HOH A 75 396 396 HOH HOH . 
K 7 HOH A 76 398 398 HOH HOH . 
K 7 HOH A 77 399 399 HOH HOH . 
K 7 HOH A 78 403 403 HOH HOH . 
K 7 HOH A 79 405 405 HOH HOH . 
K 7 HOH A 80 406 406 HOH HOH . 
K 7 HOH A 81 409 409 HOH HOH . 
K 7 HOH A 82 410 410 HOH HOH . 
K 7 HOH A 83 411 411 HOH HOH . 
K 7 HOH A 84 412 412 HOH HOH . 
K 7 HOH A 85 413 413 HOH HOH . 
K 7 HOH A 86 415 415 HOH HOH . 
K 7 HOH A 87 416 416 HOH HOH . 
K 7 HOH A 88 417 417 HOH HOH . 
K 7 HOH A 89 418 418 HOH HOH . 
K 7 HOH A 90 419 419 HOH HOH . 
K 7 HOH A 91 420 420 HOH HOH . 
K 7 HOH A 92 421 421 HOH HOH . 
K 7 HOH A 93 423 423 HOH HOH . 
K 7 HOH A 94 430 430 HOH HOH . 
K 7 HOH A 95 432 432 HOH HOH . 
K 7 HOH A 96 433 433 HOH HOH . 
L 7 HOH B 1 201 201 HOH HOH . 
L 7 HOH B 2 203 203 HOH HOH . 
L 7 HOH B 3 204 204 HOH HOH . 
L 7 HOH B 4 205 205 HOH HOH . 
L 7 HOH B 5 208 208 HOH HOH . 
L 7 HOH B 6 212 212 HOH HOH . 
L 7 HOH B 7 213 213 HOH HOH . 
L 7 HOH B 8 214 214 HOH HOH . 
L 7 HOH B 9 218 218 HOH HOH . 
L 7 HOH B 10 220 220 HOH HOH . 
L 7 HOH B 11 223 223 HOH HOH . 
L 7 HOH B 12 224 224 HOH HOH . 
L 7 HOH B 13 225 225 HOH HOH . 
L 7 HOH B 14 226 226 HOH HOH . 
L 7 HOH B 15 227 227 HOH HOH . 
L 7 HOH B 16 232 232 HOH HOH . 
L 7 HOH B 17 233 233 HOH HOH . 
L 7 HOH B 18 234 234 HOH HOH . 
L 7 HOH B 19 235 235 HOH HOH . 
L 7 HOH B 20 238 238 HOH HOH . 
L 7 HOH B 21 239 239 HOH HOH . 
L 7 HOH B 22 240 240 HOH HOH . 
L 7 HOH B 23 242 242 HOH HOH . 
L 7 HOH B 24 243 243 HOH HOH . 
L 7 HOH B 25 245 245 HOH HOH . 
L 7 HOH B 26 246 246 HOH HOH . 
L 7 HOH B 27 247 247 HOH HOH . 
L 7 HOH B 28 249 249 HOH HOH . 
L 7 HOH B 29 254 254 HOH HOH . 
L 7 HOH B 30 257 257 HOH HOH . 
L 7 HOH B 31 258 258 HOH HOH . 
L 7 HOH B 32 259 259 HOH HOH . 
L 7 HOH B 33 265 265 HOH HOH . 
L 7 HOH B 34 266 266 HOH HOH . 
L 7 HOH B 35 267 267 HOH HOH . 
L 7 HOH B 36 269 269 HOH HOH . 
L 7 HOH B 37 272 272 HOH HOH . 
L 7 HOH B 38 273 273 HOH HOH . 
L 7 HOH B 39 277 277 HOH HOH . 
L 7 HOH B 40 278 278 HOH HOH . 
L 7 HOH B 41 280 280 HOH HOH . 
L 7 HOH B 42 282 282 HOH HOH . 
L 7 HOH B 43 283 283 HOH HOH . 
L 7 HOH B 44 285 285 HOH HOH . 
L 7 HOH B 45 290 290 HOH HOH . 
L 7 HOH B 46 291 291 HOH HOH . 
L 7 HOH B 47 293 293 HOH HOH . 
L 7 HOH B 48 297 297 HOH HOH . 
L 7 HOH B 49 298 298 HOH HOH . 
L 7 HOH B 50 299 299 HOH HOH . 
L 7 HOH B 51 301 301 HOH HOH . 
L 7 HOH B 52 303 303 HOH HOH . 
L 7 HOH B 53 304 304 HOH HOH . 
L 7 HOH B 54 307 307 HOH HOH . 
L 7 HOH B 55 309 309 HOH HOH . 
L 7 HOH B 56 310 310 HOH HOH . 
L 7 HOH B 57 311 311 HOH HOH . 
L 7 HOH B 58 313 313 HOH HOH . 
L 7 HOH B 59 322 322 HOH HOH . 
L 7 HOH B 60 323 323 HOH HOH . 
L 7 HOH B 61 325 325 HOH HOH . 
L 7 HOH B 62 326 326 HOH HOH . 
L 7 HOH B 63 327 327 HOH HOH . 
L 7 HOH B 64 328 328 HOH HOH . 
L 7 HOH B 65 329 329 HOH HOH . 
L 7 HOH B 66 330 330 HOH HOH . 
L 7 HOH B 67 331 331 HOH HOH . 
L 7 HOH B 68 332 332 HOH HOH . 
L 7 HOH B 69 338 338 HOH HOH . 
L 7 HOH B 70 340 340 HOH HOH . 
L 7 HOH B 71 341 341 HOH HOH . 
L 7 HOH B 72 343 343 HOH HOH . 
L 7 HOH B 73 344 344 HOH HOH . 
L 7 HOH B 74 345 345 HOH HOH . 
L 7 HOH B 75 348 348 HOH HOH . 
L 7 HOH B 76 353 353 HOH HOH . 
L 7 HOH B 77 355 355 HOH HOH . 
L 7 HOH B 78 357 357 HOH HOH . 
L 7 HOH B 79 358 358 HOH HOH . 
L 7 HOH B 80 359 359 HOH HOH . 
L 7 HOH B 81 360 360 HOH HOH . 
L 7 HOH B 82 367 367 HOH HOH . 
L 7 HOH B 83 369 369 HOH HOH . 
L 7 HOH B 84 371 371 HOH HOH . 
L 7 HOH B 85 372 372 HOH HOH . 
L 7 HOH B 86 375 375 HOH HOH . 
L 7 HOH B 87 377 377 HOH HOH . 
L 7 HOH B 88 378 378 HOH HOH . 
L 7 HOH B 89 380 380 HOH HOH . 
L 7 HOH B 90 381 381 HOH HOH . 
L 7 HOH B 91 382 382 HOH HOH . 
L 7 HOH B 92 384 384 HOH HOH . 
L 7 HOH B 93 386 386 HOH HOH . 
L 7 HOH B 94 387 387 HOH HOH . 
L 7 HOH B 95 389 389 HOH HOH . 
L 7 HOH B 96 390 390 HOH HOH . 
L 7 HOH B 97 391 391 HOH HOH . 
L 7 HOH B 98 393 393 HOH HOH . 
L 7 HOH B 99 395 395 HOH HOH . 
L 7 HOH B 100 397 397 HOH HOH . 
L 7 HOH B 101 400 400 HOH HOH . 
L 7 HOH B 102 401 401 HOH HOH . 
L 7 HOH B 103 402 402 HOH HOH . 
L 7 HOH B 104 404 404 HOH HOH . 
L 7 HOH B 105 407 407 HOH HOH . 
L 7 HOH B 106 408 408 HOH HOH . 
L 7 HOH B 107 414 414 HOH HOH . 
L 7 HOH B 108 422 422 HOH HOH . 
L 7 HOH B 109 424 424 HOH HOH . 
L 7 HOH B 110 425 425 HOH HOH . 
L 7 HOH B 111 426 426 HOH HOH . 
L 7 HOH B 112 427 427 HOH HOH . 
L 7 HOH B 113 428 428 HOH HOH . 
L 7 HOH B 114 429 429 HOH HOH . 
L 7 HOH B 115 431 431 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . F 4 23.051 38.861 12.303 1 48.97 ? S DMS 304 A 1 
HETATM 2 O O DMS . . . F 4 21.65 38.404 11.466 1 48.26 ? O DMS 304 A 1 
HETATM 3 C C1 DMS . . . F 4 24.116 37.43 12.518 1 48.48 ? C1 DMS 304 A 1 
HETATM 4 C C2 DMS . . . F 4 24.091 39.95 11.328 1 48.53 ? C2 DMS 304 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           224 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#