data_3KFG # _model_server_result.job_id CTad8Zy3JmYy2Bf-FJXH7Q _model_server_result.datetime_utc '2024-10-19 09:27:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kfg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 3KFG # _exptl.entry_id 3KFG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 114.185 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description heptan-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KFG _cell.length_a 47.697 _cell.length_b 53.743 _cell.length_c 60.946 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KFG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 64 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 64 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 157 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 157 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.089 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C7 H14 O' _chem_comp.formula_weight 114.185 _chem_comp.id HTX _chem_comp.mon_nstd_flag . _chem_comp.name heptan-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-heptanone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 HTX sing 178 n n C2 O2 HTX doub 179 n n C2 C3 HTX sing 180 n n C3 C5 HTX sing 181 n n C5 C11 HTX sing 182 n n C11 C12 HTX sing 183 n n C12 C13 HTX sing 184 n n C1 H1 HTX sing 185 n n C1 H1A HTX sing 186 n n C1 H1B HTX sing 187 n n C3 H3 HTX sing 188 n n C3 H3A HTX sing 189 n n C5 H5 HTX sing 190 n n C5 H5A HTX sing 191 n n C11 H11 HTX sing 192 n n C11 H11A HTX sing 193 n n C12 H12 HTX sing 194 n n C12 H12A HTX sing 195 n n C13 H13 HTX sing 196 n n C13 H13A HTX sing 197 n n C13 H13B HTX sing 198 n n # _atom_sites.entry_id 3KFG _atom_sites.fract_transf_matrix[1][1] 0.020966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016408 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 201 201 CL CL . C 2 CL A 1 202 202 CL CL . D 3 2EH A 1 301 301 2EH 2EH . E 4 HTX A 1 302 302 HTX HTX . F 5 HOH A 1 501 501 HOH HOH . F 5 HOH A 2 502 502 HOH HOH . F 5 HOH A 3 503 503 HOH HOH . F 5 HOH A 4 504 504 HOH HOH . F 5 HOH A 5 505 505 HOH HOH . F 5 HOH A 6 506 506 HOH HOH . F 5 HOH A 7 507 507 HOH HOH . F 5 HOH A 8 508 508 HOH HOH . F 5 HOH A 9 509 509 HOH HOH . F 5 HOH A 10 510 510 HOH HOH . F 5 HOH A 11 511 511 HOH HOH . F 5 HOH A 12 512 512 HOH HOH . F 5 HOH A 13 513 513 HOH HOH . F 5 HOH A 14 514 514 HOH HOH . F 5 HOH A 15 515 515 HOH HOH . F 5 HOH A 16 516 516 HOH HOH . F 5 HOH A 17 517 517 HOH HOH . F 5 HOH A 18 518 518 HOH HOH . F 5 HOH A 19 519 519 HOH HOH . F 5 HOH A 20 520 520 HOH HOH . F 5 HOH A 21 521 521 HOH HOH . F 5 HOH A 22 522 522 HOH HOH . F 5 HOH A 23 523 523 HOH HOH . F 5 HOH A 24 524 524 HOH HOH . F 5 HOH A 25 525 525 HOH HOH . F 5 HOH A 26 526 526 HOH HOH . F 5 HOH A 27 527 527 HOH HOH . F 5 HOH A 28 528 528 HOH HOH . F 5 HOH A 29 529 529 HOH HOH . F 5 HOH A 30 530 530 HOH HOH . F 5 HOH A 31 531 531 HOH HOH . F 5 HOH A 32 532 532 HOH HOH . F 5 HOH A 33 533 533 HOH HOH . F 5 HOH A 34 534 534 HOH HOH . F 5 HOH A 35 535 535 HOH HOH . F 5 HOH A 36 536 536 HOH HOH . F 5 HOH A 37 537 537 HOH HOH . F 5 HOH A 38 538 538 HOH HOH . F 5 HOH A 39 539 539 HOH HOH . F 5 HOH A 40 540 540 HOH HOH . F 5 HOH A 41 541 541 HOH HOH . F 5 HOH A 42 542 542 HOH HOH . F 5 HOH A 43 543 543 HOH HOH . F 5 HOH A 44 544 544 HOH HOH . F 5 HOH A 45 545 545 HOH HOH . F 5 HOH A 46 546 546 HOH HOH . F 5 HOH A 47 547 547 HOH HOH . F 5 HOH A 48 548 548 HOH HOH . F 5 HOH A 49 549 549 HOH HOH . F 5 HOH A 50 550 550 HOH HOH . F 5 HOH A 51 551 551 HOH HOH . F 5 HOH A 52 552 552 HOH HOH . F 5 HOH A 53 553 553 HOH HOH . F 5 HOH A 54 554 554 HOH HOH . F 5 HOH A 55 555 555 HOH HOH . F 5 HOH A 56 556 556 HOH HOH . F 5 HOH A 57 557 557 HOH HOH . F 5 HOH A 58 558 558 HOH HOH . F 5 HOH A 59 559 559 HOH HOH . F 5 HOH A 60 560 560 HOH HOH . F 5 HOH A 61 561 561 HOH HOH . F 5 HOH A 62 562 562 HOH HOH . F 5 HOH A 63 563 563 HOH HOH . F 5 HOH A 64 564 564 HOH HOH . F 5 HOH A 65 565 565 HOH HOH . F 5 HOH A 66 566 566 HOH HOH . F 5 HOH A 67 567 567 HOH HOH . F 5 HOH A 68 568 568 HOH HOH . F 5 HOH A 69 569 569 HOH HOH . F 5 HOH A 70 570 570 HOH HOH . F 5 HOH A 71 571 571 HOH HOH . F 5 HOH A 72 572 572 HOH HOH . F 5 HOH A 73 573 573 HOH HOH . F 5 HOH A 74 574 574 HOH HOH . F 5 HOH A 75 575 575 HOH HOH . F 5 HOH A 76 576 576 HOH HOH . F 5 HOH A 77 577 577 HOH HOH . F 5 HOH A 78 578 578 HOH HOH . F 5 HOH A 79 579 579 HOH HOH . F 5 HOH A 80 580 580 HOH HOH . F 5 HOH A 81 581 581 HOH HOH . F 5 HOH A 82 582 582 HOH HOH . F 5 HOH A 83 583 583 HOH HOH . F 5 HOH A 84 584 584 HOH HOH . F 5 HOH A 85 585 585 HOH HOH . F 5 HOH A 86 586 586 HOH HOH . F 5 HOH A 87 587 587 HOH HOH . F 5 HOH A 88 588 588 HOH HOH . F 5 HOH A 89 589 589 HOH HOH . F 5 HOH A 90 590 590 HOH HOH . F 5 HOH A 91 591 591 HOH HOH . F 5 HOH A 92 592 592 HOH HOH . F 5 HOH A 93 593 593 HOH HOH . F 5 HOH A 94 594 594 HOH HOH . F 5 HOH A 95 595 595 HOH HOH . F 5 HOH A 96 596 596 HOH HOH . F 5 HOH A 97 597 597 HOH HOH . F 5 HOH A 98 598 598 HOH HOH . F 5 HOH A 99 599 599 HOH HOH . F 5 HOH A 100 600 600 HOH HOH . F 5 HOH A 101 601 601 HOH HOH . F 5 HOH A 102 602 602 HOH HOH . F 5 HOH A 103 603 603 HOH HOH . F 5 HOH A 104 604 604 HOH HOH . F 5 HOH A 105 605 605 HOH HOH . F 5 HOH A 106 606 606 HOH HOH . F 5 HOH A 107 607 607 HOH HOH . F 5 HOH A 108 609 609 HOH HOH . F 5 HOH A 109 610 610 HOH HOH . F 5 HOH A 110 611 611 HOH HOH . F 5 HOH A 111 612 612 HOH HOH . F 5 HOH A 112 613 613 HOH HOH . F 5 HOH A 113 614 614 HOH HOH . F 5 HOH A 114 615 615 HOH HOH . F 5 HOH A 115 616 616 HOH HOH . F 5 HOH A 116 617 617 HOH HOH . F 5 HOH A 117 618 618 HOH HOH . F 5 HOH A 118 619 619 HOH HOH . F 5 HOH A 119 620 620 HOH HOH . F 5 HOH A 120 621 621 HOH HOH . F 5 HOH A 121 622 622 HOH HOH . F 5 HOH A 122 623 623 HOH HOH . F 5 HOH A 123 624 624 HOH HOH . F 5 HOH A 124 625 625 HOH HOH . F 5 HOH A 125 626 626 HOH HOH . F 5 HOH A 126 627 627 HOH HOH . F 5 HOH A 127 628 628 HOH HOH . F 5 HOH A 128 629 629 HOH HOH . F 5 HOH A 129 630 630 HOH HOH . F 5 HOH A 130 631 631 HOH HOH . F 5 HOH A 131 632 632 HOH HOH . F 5 HOH A 132 633 633 HOH HOH . F 5 HOH A 133 634 634 HOH HOH . F 5 HOH A 134 635 635 HOH HOH . F 5 HOH A 135 636 636 HOH HOH . F 5 HOH A 136 637 637 HOH HOH . F 5 HOH A 137 638 638 HOH HOH . F 5 HOH A 138 639 639 HOH HOH . F 5 HOH A 139 640 640 HOH HOH . F 5 HOH A 140 641 641 HOH HOH . F 5 HOH A 141 642 642 HOH HOH . F 5 HOH A 142 643 643 HOH HOH . F 5 HOH A 143 644 644 HOH HOH . F 5 HOH A 144 645 645 HOH HOH . F 5 HOH A 145 646 646 HOH HOH . F 5 HOH A 146 647 647 HOH HOH . F 5 HOH A 147 648 648 HOH HOH . F 5 HOH A 148 649 649 HOH HOH . F 5 HOH A 149 650 650 HOH HOH . F 5 HOH A 150 651 651 HOH HOH . F 5 HOH A 151 652 652 HOH HOH . F 5 HOH A 152 653 653 HOH HOH . F 5 HOH A 153 654 654 HOH HOH . F 5 HOH A 154 655 655 HOH HOH . F 5 HOH A 155 656 656 HOH HOH . F 5 HOH A 156 657 657 HOH HOH . F 5 HOH A 157 658 658 HOH HOH . F 5 HOH A 158 659 659 HOH HOH . F 5 HOH A 159 660 660 HOH HOH . F 5 HOH A 160 661 661 HOH HOH . F 5 HOH A 161 662 662 HOH HOH . F 5 HOH A 162 663 663 HOH HOH . F 5 HOH A 163 664 664 HOH HOH . F 5 HOH A 164 665 665 HOH HOH . F 5 HOH A 165 666 666 HOH HOH . F 5 HOH A 166 667 667 HOH HOH . F 5 HOH A 167 668 668 HOH HOH . F 5 HOH A 168 669 669 HOH HOH . F 5 HOH A 169 670 670 HOH HOH . F 5 HOH A 170 671 671 HOH HOH . F 5 HOH A 171 672 672 HOH HOH . F 5 HOH A 172 673 673 HOH HOH . F 5 HOH A 173 674 674 HOH HOH . F 5 HOH A 174 675 675 HOH HOH . F 5 HOH A 175 676 676 HOH HOH . F 5 HOH A 176 677 677 HOH HOH . F 5 HOH A 177 678 678 HOH HOH . F 5 HOH A 178 679 679 HOH HOH . F 5 HOH A 179 680 680 HOH HOH . F 5 HOH A 180 681 681 HOH HOH . F 5 HOH A 181 682 682 HOH HOH . F 5 HOH A 182 683 683 HOH HOH . F 5 HOH A 183 684 684 HOH HOH . F 5 HOH A 184 685 685 HOH HOH . F 5 HOH A 185 686 686 HOH HOH . F 5 HOH A 186 687 687 HOH HOH . F 5 HOH A 187 688 688 HOH HOH . F 5 HOH A 188 689 689 HOH HOH . F 5 HOH A 189 690 690 HOH HOH . F 5 HOH A 190 691 691 HOH HOH . F 5 HOH A 191 692 692 HOH HOH . F 5 HOH A 192 693 693 HOH HOH . F 5 HOH A 193 694 694 HOH HOH . F 5 HOH A 194 695 695 HOH HOH . F 5 HOH A 195 696 696 HOH HOH . F 5 HOH A 196 697 697 HOH HOH . F 5 HOH A 197 698 698 HOH HOH . F 5 HOH A 198 699 699 HOH HOH . F 5 HOH A 199 700 700 HOH HOH . F 5 HOH A 200 701 701 HOH HOH . F 5 HOH A 201 702 702 HOH HOH . F 5 HOH A 202 703 703 HOH HOH . F 5 HOH A 203 704 704 HOH HOH . F 5 HOH A 204 705 705 HOH HOH . F 5 HOH A 205 706 706 HOH HOH . F 5 HOH A 206 707 707 HOH HOH . F 5 HOH A 207 708 708 HOH HOH . F 5 HOH A 208 709 709 HOH HOH . F 5 HOH A 209 710 710 HOH HOH . F 5 HOH A 210 711 711 HOH HOH . F 5 HOH A 211 712 712 HOH HOH . F 5 HOH A 212 713 713 HOH HOH . F 5 HOH A 213 714 714 HOH HOH . F 5 HOH A 214 715 715 HOH HOH . F 5 HOH A 215 716 716 HOH HOH . F 5 HOH A 216 717 717 HOH HOH . F 5 HOH A 217 718 718 HOH HOH . F 5 HOH A 218 719 719 HOH HOH . F 5 HOH A 219 720 720 HOH HOH . F 5 HOH A 220 721 721 HOH HOH . F 5 HOH A 221 722 722 HOH HOH . F 5 HOH A 222 723 723 HOH HOH . F 5 HOH A 223 724 724 HOH HOH . F 5 HOH A 224 725 725 HOH HOH . F 5 HOH A 225 726 726 HOH HOH . F 5 HOH A 226 727 727 HOH HOH . F 5 HOH A 227 728 728 HOH HOH . F 5 HOH A 228 729 729 HOH HOH . F 5 HOH A 229 730 730 HOH HOH . F 5 HOH A 230 731 731 HOH HOH . F 5 HOH A 231 732 732 HOH HOH . F 5 HOH A 232 733 733 HOH HOH . F 5 HOH A 233 734 734 HOH HOH . F 5 HOH A 234 735 735 HOH HOH . F 5 HOH A 235 736 736 HOH HOH . F 5 HOH A 236 737 737 HOH HOH . F 5 HOH A 237 738 738 HOH HOH . F 5 HOH A 238 739 739 HOH HOH . F 5 HOH A 239 740 740 HOH HOH . F 5 HOH A 240 741 741 HOH HOH . F 5 HOH A 241 742 742 HOH HOH . F 5 HOH A 242 743 743 HOH HOH . F 5 HOH A 243 744 744 HOH HOH . F 5 HOH A 244 745 745 HOH HOH . F 5 HOH A 245 746 746 HOH HOH . F 5 HOH A 246 747 747 HOH HOH . F 5 HOH A 247 748 748 HOH HOH . F 5 HOH A 248 749 749 HOH HOH . F 5 HOH A 249 750 750 HOH HOH . F 5 HOH A 250 751 751 HOH HOH . F 5 HOH A 251 752 752 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HTX . A . E 4 12.323 -29.523 10.384 0.5 19.52 ? C1 HTX 302 A 1 HETATM 2 C C2 HTX . A . E 4 12.205 -30.47 9.221 0.5 15.36 ? C2 HTX 302 A 1 HETATM 3 O O2 HTX . A . E 4 11.387 -31.363 9.282 0.5 20.36 ? O2 HTX 302 A 1 HETATM 4 C C3 HTX . A . E 4 13.092 -30.332 7.993 0.5 18.59 ? C3 HTX 302 A 1 HETATM 5 C C5 HTX . A . E 4 12.386 -30.823 6.711 0.5 18.16 ? C5 HTX 302 A 1 HETATM 6 C C11 HTX . A . E 4 11.231 -29.947 6.248 0.5 20.01 ? C11 HTX 302 A 1 HETATM 7 C C12 HTX . A . E 4 10.541 -30.549 5.028 0.5 23.57 ? C12 HTX 302 A 1 HETATM 8 C C13 HTX . A . E 4 9.959 -31.926 5.325 0.5 22.6 ? C13 HTX 302 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #