data_3KFI
#
_model_server_result.job_id            n337SKhGP9DH-aWtAa6yeg 
_model_server_result.datetime_utc      '2024-12-26 18:18:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kfi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    3KFI 
#
_exptl.entry_id    3KFI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              108.141 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,5-dimethylpyrazine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3KFI 
_cell.length_a            47.838 
_cell.length_b            53.444 
_cell.length_c            61.479 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KFI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             64 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              64 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             157 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              157 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.054 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C6 H8 N2' 
_chem_comp.formula_weight    108.141 
_chem_comp.id                25R 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,5-dimethylpyrazine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 25R doub 1 n y 
N1 C6 25R sing 2 n y 
C2 C3 25R sing 3 n y 
C2 C7 25R sing 4 n n 
C3 N4 25R doub 5 n y 
N4 C5 25R sing 6 n y 
C5 C6 25R doub 7 n y 
C5 C8 25R sing 8 n n 
C3 H3 25R sing 9 n n 
C6 H6 25R sing 10 n n 
C7 H7 25R sing 11 n n 
C7 H7A 25R sing 12 n n 
C7 H7B 25R sing 13 n n 
C8 H8 25R sing 14 n n 
C8 H8A 25R sing 15 n n 
C8 H8B 25R sing 16 n n 
#
_atom_sites.entry_id                     3KFI 
_atom_sites.fract_transf_matrix[1][1]    0.020904 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018711 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016266 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 201 201 CL CL . 
C 2 CL A 1 202 202 CL CL . 
D 3 25R A 1 301 301 25R 25R . 
E 4 HOH A 1 501 501 HOH HOH . 
E 4 HOH A 2 502 502 HOH HOH . 
E 4 HOH A 3 503 503 HOH HOH . 
E 4 HOH A 4 504 504 HOH HOH . 
E 4 HOH A 5 505 505 HOH HOH . 
E 4 HOH A 6 506 506 HOH HOH . 
E 4 HOH A 7 507 507 HOH HOH . 
E 4 HOH A 8 508 508 HOH HOH . 
E 4 HOH A 9 509 509 HOH HOH . 
E 4 HOH A 10 510 510 HOH HOH . 
E 4 HOH A 11 511 511 HOH HOH . 
E 4 HOH A 12 512 512 HOH HOH . 
E 4 HOH A 13 513 513 HOH HOH . 
E 4 HOH A 14 514 514 HOH HOH . 
E 4 HOH A 15 515 515 HOH HOH . 
E 4 HOH A 16 516 516 HOH HOH . 
E 4 HOH A 17 517 517 HOH HOH . 
E 4 HOH A 18 518 518 HOH HOH . 
E 4 HOH A 19 519 519 HOH HOH . 
E 4 HOH A 20 520 520 HOH HOH . 
E 4 HOH A 21 521 521 HOH HOH . 
E 4 HOH A 22 522 522 HOH HOH . 
E 4 HOH A 23 523 523 HOH HOH . 
E 4 HOH A 24 524 524 HOH HOH . 
E 4 HOH A 25 525 525 HOH HOH . 
E 4 HOH A 26 526 526 HOH HOH . 
E 4 HOH A 27 527 527 HOH HOH . 
E 4 HOH A 28 528 528 HOH HOH . 
E 4 HOH A 29 529 529 HOH HOH . 
E 4 HOH A 30 530 530 HOH HOH . 
E 4 HOH A 31 531 531 HOH HOH . 
E 4 HOH A 32 532 532 HOH HOH . 
E 4 HOH A 33 533 533 HOH HOH . 
E 4 HOH A 34 534 534 HOH HOH . 
E 4 HOH A 35 535 535 HOH HOH . 
E 4 HOH A 36 536 536 HOH HOH . 
E 4 HOH A 37 537 537 HOH HOH . 
E 4 HOH A 38 538 538 HOH HOH . 
E 4 HOH A 39 539 539 HOH HOH . 
E 4 HOH A 40 540 540 HOH HOH . 
E 4 HOH A 41 541 541 HOH HOH . 
E 4 HOH A 42 542 542 HOH HOH . 
E 4 HOH A 43 543 543 HOH HOH . 
E 4 HOH A 44 544 544 HOH HOH . 
E 4 HOH A 45 545 545 HOH HOH . 
E 4 HOH A 46 546 546 HOH HOH . 
E 4 HOH A 47 547 547 HOH HOH . 
E 4 HOH A 48 548 548 HOH HOH . 
E 4 HOH A 49 549 549 HOH HOH . 
E 4 HOH A 50 550 550 HOH HOH . 
E 4 HOH A 51 551 551 HOH HOH . 
E 4 HOH A 52 552 552 HOH HOH . 
E 4 HOH A 53 553 553 HOH HOH . 
E 4 HOH A 54 554 554 HOH HOH . 
E 4 HOH A 55 555 555 HOH HOH . 
E 4 HOH A 56 556 556 HOH HOH . 
E 4 HOH A 57 557 557 HOH HOH . 
E 4 HOH A 58 558 558 HOH HOH . 
E 4 HOH A 59 559 559 HOH HOH . 
E 4 HOH A 60 560 560 HOH HOH . 
E 4 HOH A 61 561 561 HOH HOH . 
E 4 HOH A 62 562 562 HOH HOH . 
E 4 HOH A 63 563 563 HOH HOH . 
E 4 HOH A 64 564 564 HOH HOH . 
E 4 HOH A 65 565 565 HOH HOH . 
E 4 HOH A 66 566 566 HOH HOH . 
E 4 HOH A 67 567 567 HOH HOH . 
E 4 HOH A 68 568 568 HOH HOH . 
E 4 HOH A 69 569 569 HOH HOH . 
E 4 HOH A 70 570 570 HOH HOH . 
E 4 HOH A 71 571 571 HOH HOH . 
E 4 HOH A 72 572 572 HOH HOH . 
E 4 HOH A 73 573 573 HOH HOH . 
E 4 HOH A 74 574 574 HOH HOH . 
E 4 HOH A 75 575 575 HOH HOH . 
E 4 HOH A 76 576 576 HOH HOH . 
E 4 HOH A 77 577 577 HOH HOH . 
E 4 HOH A 78 578 578 HOH HOH . 
E 4 HOH A 79 579 579 HOH HOH . 
E 4 HOH A 80 580 580 HOH HOH . 
E 4 HOH A 81 581 581 HOH HOH . 
E 4 HOH A 82 582 582 HOH HOH . 
E 4 HOH A 83 583 583 HOH HOH . 
E 4 HOH A 84 584 584 HOH HOH . 
E 4 HOH A 85 585 585 HOH HOH . 
E 4 HOH A 86 586 586 HOH HOH . 
E 4 HOH A 87 587 587 HOH HOH . 
E 4 HOH A 88 588 588 HOH HOH . 
E 4 HOH A 89 589 589 HOH HOH . 
E 4 HOH A 90 590 590 HOH HOH . 
E 4 HOH A 91 591 591 HOH HOH . 
E 4 HOH A 92 592 592 HOH HOH . 
E 4 HOH A 93 593 593 HOH HOH . 
E 4 HOH A 94 594 594 HOH HOH . 
E 4 HOH A 95 595 595 HOH HOH . 
E 4 HOH A 96 596 596 HOH HOH . 
E 4 HOH A 97 597 597 HOH HOH . 
E 4 HOH A 98 598 598 HOH HOH . 
E 4 HOH A 99 599 599 HOH HOH . 
E 4 HOH A 100 600 600 HOH HOH . 
E 4 HOH A 101 601 601 HOH HOH . 
E 4 HOH A 102 602 602 HOH HOH . 
E 4 HOH A 103 603 603 HOH HOH . 
E 4 HOH A 104 604 604 HOH HOH . 
E 4 HOH A 105 605 605 HOH HOH . 
E 4 HOH A 106 606 606 HOH HOH . 
E 4 HOH A 107 607 607 HOH HOH . 
E 4 HOH A 108 608 608 HOH HOH . 
E 4 HOH A 109 609 609 HOH HOH . 
E 4 HOH A 110 610 610 HOH HOH . 
E 4 HOH A 111 611 611 HOH HOH . 
E 4 HOH A 112 612 612 HOH HOH . 
E 4 HOH A 113 613 613 HOH HOH . 
E 4 HOH A 114 614 614 HOH HOH . 
E 4 HOH A 115 615 615 HOH HOH . 
E 4 HOH A 116 616 616 HOH HOH . 
E 4 HOH A 117 617 617 HOH HOH . 
E 4 HOH A 118 618 618 HOH HOH . 
E 4 HOH A 119 619 619 HOH HOH . 
E 4 HOH A 120 620 620 HOH HOH . 
E 4 HOH A 121 621 621 HOH HOH . 
E 4 HOH A 122 622 622 HOH HOH . 
E 4 HOH A 123 623 623 HOH HOH . 
E 4 HOH A 124 624 624 HOH HOH . 
E 4 HOH A 125 625 625 HOH HOH . 
E 4 HOH A 126 626 626 HOH HOH . 
E 4 HOH A 127 628 628 HOH HOH . 
E 4 HOH A 128 629 629 HOH HOH . 
E 4 HOH A 129 630 630 HOH HOH . 
E 4 HOH A 130 631 631 HOH HOH . 
E 4 HOH A 131 632 632 HOH HOH . 
E 4 HOH A 132 633 633 HOH HOH . 
E 4 HOH A 133 634 634 HOH HOH . 
E 4 HOH A 134 635 635 HOH HOH . 
E 4 HOH A 135 636 636 HOH HOH . 
E 4 HOH A 136 637 637 HOH HOH . 
E 4 HOH A 137 638 638 HOH HOH . 
E 4 HOH A 138 639 639 HOH HOH . 
E 4 HOH A 139 640 640 HOH HOH . 
E 4 HOH A 140 641 641 HOH HOH . 
E 4 HOH A 141 642 642 HOH HOH . 
E 4 HOH A 142 643 643 HOH HOH . 
E 4 HOH A 143 644 644 HOH HOH . 
E 4 HOH A 144 645 645 HOH HOH . 
E 4 HOH A 145 646 646 HOH HOH . 
E 4 HOH A 146 647 647 HOH HOH . 
E 4 HOH A 147 648 648 HOH HOH . 
E 4 HOH A 148 649 649 HOH HOH . 
E 4 HOH A 149 650 650 HOH HOH . 
E 4 HOH A 150 651 651 HOH HOH . 
E 4 HOH A 151 652 652 HOH HOH . 
E 4 HOH A 152 653 653 HOH HOH . 
E 4 HOH A 153 654 654 HOH HOH . 
E 4 HOH A 154 655 655 HOH HOH . 
E 4 HOH A 155 656 656 HOH HOH . 
E 4 HOH A 156 657 657 HOH HOH . 
E 4 HOH A 157 658 658 HOH HOH . 
E 4 HOH A 158 659 659 HOH HOH . 
E 4 HOH A 159 660 660 HOH HOH . 
E 4 HOH A 160 661 661 HOH HOH . 
E 4 HOH A 161 662 662 HOH HOH . 
E 4 HOH A 162 663 663 HOH HOH . 
E 4 HOH A 163 664 664 HOH HOH . 
E 4 HOH A 164 665 665 HOH HOH . 
E 4 HOH A 165 666 666 HOH HOH . 
E 4 HOH A 166 667 667 HOH HOH . 
E 4 HOH A 167 668 668 HOH HOH . 
E 4 HOH A 168 669 669 HOH HOH . 
E 4 HOH A 169 670 670 HOH HOH . 
E 4 HOH A 170 671 671 HOH HOH . 
E 4 HOH A 171 672 672 HOH HOH . 
E 4 HOH A 172 673 673 HOH HOH . 
E 4 HOH A 173 674 674 HOH HOH . 
E 4 HOH A 174 675 675 HOH HOH . 
E 4 HOH A 175 676 676 HOH HOH . 
E 4 HOH A 176 677 677 HOH HOH . 
E 4 HOH A 177 678 678 HOH HOH . 
E 4 HOH A 178 679 679 HOH HOH . 
E 4 HOH A 179 680 680 HOH HOH . 
E 4 HOH A 180 681 681 HOH HOH . 
E 4 HOH A 181 682 682 HOH HOH . 
E 4 HOH A 182 683 683 HOH HOH . 
E 4 HOH A 183 684 684 HOH HOH . 
E 4 HOH A 184 685 685 HOH HOH . 
E 4 HOH A 185 686 686 HOH HOH . 
E 4 HOH A 186 687 687 HOH HOH . 
E 4 HOH A 187 688 688 HOH HOH . 
E 4 HOH A 188 689 689 HOH HOH . 
E 4 HOH A 189 690 690 HOH HOH . 
E 4 HOH A 190 691 691 HOH HOH . 
E 4 HOH A 191 692 692 HOH HOH . 
E 4 HOH A 192 693 693 HOH HOH . 
E 4 HOH A 193 694 694 HOH HOH . 
E 4 HOH A 194 695 695 HOH HOH . 
E 4 HOH A 195 696 696 HOH HOH . 
E 4 HOH A 196 697 697 HOH HOH . 
E 4 HOH A 197 698 698 HOH HOH . 
E 4 HOH A 198 699 699 HOH HOH . 
E 4 HOH A 199 700 700 HOH HOH . 
E 4 HOH A 200 701 701 HOH HOH . 
E 4 HOH A 201 702 702 HOH HOH . 
E 4 HOH A 202 703 703 HOH HOH . 
E 4 HOH A 203 704 704 HOH HOH . 
E 4 HOH A 204 705 705 HOH HOH . 
E 4 HOH A 205 706 706 HOH HOH . 
E 4 HOH A 206 707 707 HOH HOH . 
E 4 HOH A 207 708 708 HOH HOH . 
E 4 HOH A 208 709 709 HOH HOH . 
E 4 HOH A 209 710 710 HOH HOH . 
E 4 HOH A 210 711 711 HOH HOH . 
E 4 HOH A 211 712 712 HOH HOH . 
E 4 HOH A 212 713 713 HOH HOH . 
E 4 HOH A 213 714 714 HOH HOH . 
E 4 HOH A 214 715 715 HOH HOH . 
E 4 HOH A 215 716 716 HOH HOH . 
E 4 HOH A 216 717 717 HOH HOH . 
E 4 HOH A 217 718 718 HOH HOH . 
E 4 HOH A 218 719 719 HOH HOH . 
E 4 HOH A 219 720 720 HOH HOH . 
E 4 HOH A 220 721 721 HOH HOH . 
E 4 HOH A 221 722 722 HOH HOH . 
E 4 HOH A 222 723 723 HOH HOH . 
E 4 HOH A 223 724 724 HOH HOH . 
E 4 HOH A 224 725 725 HOH HOH . 
E 4 HOH A 225 726 726 HOH HOH . 
E 4 HOH A 226 727 727 HOH HOH . 
E 4 HOH A 227 728 728 HOH HOH . 
E 4 HOH A 228 729 729 HOH HOH . 
E 4 HOH A 229 730 730 HOH HOH . 
E 4 HOH A 230 731 731 HOH HOH . 
E 4 HOH A 231 732 732 HOH HOH . 
E 4 HOH A 232 733 733 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 25R . . . D 3 12.293 -30.532 6.717 1 22.93 ? N1 25R 301 A 1 
HETATM 2 C C2 25R . . . D 3 11.084 -31.117 6.699 1 22.86 ? C2 25R 301 A 1 
HETATM 3 C C3 25R . . . D 3 10.403 -31.33 7.902 1 22.1 ? C3 25R 301 A 1 
HETATM 4 N N4 25R . . . D 3 10.945 -30.924 9.074 1 23.5 ? N4 25R 301 A 1 
HETATM 5 C C5 25R . . . D 3 12.152 -30.328 9.078 1 21.57 ? C5 25R 301 A 1 
HETATM 6 C C6 25R . . . D 3 12.848 -30.13 7.891 1 21.49 ? C6 25R 301 A 1 
HETATM 7 C C7 25R . . . D 3 10.411 -31.578 5.427 1 24.13 ? C7 25R 301 A 1 
HETATM 8 C C8 25R . . . D 3 12.7 -29.903 10.385 1 23.56 ? C8 25R 301 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           8 
#