data_3KFJ # _model_server_result.job_id 6tQOR0lovIkVmf5Ix-EZTA _model_server_result.datetime_utc '2024-11-30 03:12:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kfj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3KFJ # _exptl.entry_id 3KFJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 559.464 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{(2S)-4-(methylamino)-4-oxo-2-[4-(phosphonooxy)benzyl]butanoyl}-L-alpha-glutamyl-L-aspartamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KFJ _cell.length_a 41.873 _cell.length_b 41.873 _cell.length_c 108.811 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KFJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_645 y+1,x-1,-z 0 1 0 1 0 0 0 0 -1 41.873 -41.873 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N5 O11 P' _chem_comp.formula_weight 559.464 _chem_comp.id YEN _chem_comp.mon_nstd_flag . _chem_comp.name N-{(2S)-4-(methylamino)-4-oxo-2-[4-(phosphonooxy)benzyl]butanoyl}-L-alpha-glutamyl-L-aspartamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 YEN sing 363 n y C1 C6 YEN doub 364 n y C1 H1 YEN sing 365 n n C2 C3 YEN doub 366 n y C2 H2 YEN sing 367 n n C3 C4 YEN sing 368 n y C3 O1 YEN sing 369 n n C4 C5 YEN doub 370 n y C4 H3 YEN sing 371 n n C5 C6 YEN sing 372 n y C5 H4 YEN sing 373 n n C6 C7 YEN sing 374 n n O1 P1 YEN sing 375 n n P1 O2 YEN sing 376 n n P1 O3 YEN doub 377 n n P1 O4 YEN sing 378 n n O2 H5 YEN sing 379 n n O4 H6 YEN sing 380 n n C7 C8 YEN sing 381 n n C7 H7 YEN sing 382 n n C7 H8 YEN sing 383 n n C8 C9 YEN sing 384 n n C8 C10 YEN sing 385 n n C8 H9 YEN sing 386 n n C9 O5 YEN doub 387 n n C9 N2 YEN sing 388 n n C10 C11 YEN sing 389 n n C10 H11 YEN sing 390 n n C10 H12 YEN sing 391 n n C11 N1 YEN sing 392 n n C11 O7 YEN doub 393 n n N1 C12 YEN sing 394 n n N1 H13 YEN sing 395 n n C12 H14 YEN sing 396 n n C12 H15 YEN sing 397 n n C12 H16 YEN sing 398 n n N2 C13 YEN sing 399 n n N2 H17 YEN sing 400 n n C13 C14 YEN sing 401 n n C13 C15 YEN sing 402 n n C13 H19 YEN sing 403 n n C14 O8 YEN doub 404 n n C14 N3 YEN sing 405 n n C15 C16 YEN sing 406 n n C15 H20 YEN sing 407 n n C15 H21 YEN sing 408 n n C16 C17 YEN sing 409 n n C16 H22 YEN sing 410 n n C16 H23 YEN sing 411 n n C17 O9 YEN doub 412 n n C17 O10 YEN sing 413 n n O10 H24 YEN sing 414 n n N3 C18 YEN sing 415 n n N3 H26 YEN sing 416 n n C18 C19 YEN sing 417 n n C18 C20 YEN sing 418 n n C18 H28 YEN sing 419 n n C19 O12 YEN doub 420 n n C19 N5 YEN sing 421 n n C20 C21 YEN sing 422 n n C20 H29 YEN sing 423 n n C20 H30 YEN sing 424 n n C21 O13 YEN doub 425 n n C21 N4 YEN sing 426 n n N4 H31 YEN sing 427 n n N4 H32 YEN sing 428 n n N5 H34 YEN sing 429 n n N5 H35 YEN sing 430 n n # _atom_sites.entry_id 3KFJ _atom_sites.fract_transf_matrix[1][1] 0.023882 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023882 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00919 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YEN A 1 1 1 YEN YEN . C 3 CL A 1 164 1 CL CL . D 3 CL A 1 2 2 CL CL . E 4 MG A 1 3 3 MG MG . F 5 HOH A 1 4 4 HOH HOH . F 5 HOH A 2 6 6 HOH HOH . F 5 HOH A 3 7 7 HOH HOH . F 5 HOH A 4 8 8 HOH HOH . F 5 HOH A 5 11 11 HOH HOH . F 5 HOH A 6 12 12 HOH HOH . F 5 HOH A 7 13 13 HOH HOH . F 5 HOH A 8 14 14 HOH HOH . F 5 HOH A 9 15 15 HOH HOH . F 5 HOH A 10 16 16 HOH HOH . F 5 HOH A 11 17 17 HOH HOH . F 5 HOH A 12 18 18 HOH HOH . F 5 HOH A 13 21 21 HOH HOH . F 5 HOH A 14 22 22 HOH HOH . F 5 HOH A 15 25 25 HOH HOH . F 5 HOH A 16 26 26 HOH HOH . F 5 HOH A 17 27 27 HOH HOH . F 5 HOH A 18 28 28 HOH HOH . F 5 HOH A 19 29 29 HOH HOH . F 5 HOH A 20 30 30 HOH HOH . F 5 HOH A 21 31 31 HOH HOH . F 5 HOH A 22 32 32 HOH HOH . F 5 HOH A 23 33 33 HOH HOH . F 5 HOH A 24 34 34 HOH HOH . F 5 HOH A 25 35 35 HOH HOH . F 5 HOH A 26 37 37 HOH HOH . F 5 HOH A 27 38 38 HOH HOH . F 5 HOH A 28 39 39 HOH HOH . F 5 HOH A 29 40 40 HOH HOH . F 5 HOH A 30 41 41 HOH HOH . F 5 HOH A 31 42 42 HOH HOH . F 5 HOH A 32 44 44 HOH HOH . F 5 HOH A 33 45 45 HOH HOH . F 5 HOH A 34 46 46 HOH HOH . F 5 HOH A 35 47 47 HOH HOH . F 5 HOH A 36 48 48 HOH HOH . F 5 HOH A 37 49 49 HOH HOH . F 5 HOH A 38 51 51 HOH HOH . F 5 HOH A 39 52 52 HOH HOH . F 5 HOH A 40 165 3 HOH HOH . F 5 HOH A 41 166 53 HOH HOH . F 5 HOH A 42 167 54 HOH HOH . F 5 HOH A 43 168 55 HOH HOH . F 5 HOH A 44 169 56 HOH HOH . F 5 HOH A 45 170 57 HOH HOH . F 5 HOH A 46 171 58 HOH HOH . F 5 HOH A 47 172 59 HOH HOH . F 5 HOH A 48 173 60 HOH HOH . F 5 HOH A 49 174 61 HOH HOH . F 5 HOH A 50 175 62 HOH HOH . F 5 HOH A 51 176 63 HOH HOH . F 5 HOH A 52 177 64 HOH HOH . F 5 HOH A 53 178 65 HOH HOH . F 5 HOH A 54 179 66 HOH HOH . F 5 HOH A 55 180 67 HOH HOH . F 5 HOH A 56 181 68 HOH HOH . F 5 HOH A 57 182 69 HOH HOH . F 5 HOH A 58 183 70 HOH HOH . F 5 HOH A 59 184 71 HOH HOH . F 5 HOH A 60 185 72 HOH HOH . F 5 HOH A 61 186 74 HOH HOH . F 5 HOH A 62 187 75 HOH HOH . F 5 HOH A 63 188 76 HOH HOH . F 5 HOH A 64 189 77 HOH HOH . F 5 HOH A 65 190 78 HOH HOH . F 5 HOH A 66 191 80 HOH HOH . F 5 HOH A 67 192 85 HOH HOH . F 5 HOH A 68 193 87 HOH HOH . F 5 HOH A 69 194 88 HOH HOH . F 5 HOH A 70 195 93 HOH HOH . F 5 HOH A 71 196 95 HOH HOH . F 5 HOH A 72 197 96 HOH HOH . F 5 HOH A 73 198 97 HOH HOH . F 5 HOH A 74 199 98 HOH HOH . F 5 HOH A 75 200 99 HOH HOH . F 5 HOH A 76 201 100 HOH HOH . F 5 HOH A 77 202 101 HOH HOH . F 5 HOH A 78 203 102 HOH HOH . F 5 HOH A 79 204 104 HOH HOH . F 5 HOH A 80 205 105 HOH HOH . F 5 HOH A 81 206 106 HOH HOH . F 5 HOH A 82 207 107 HOH HOH . F 5 HOH A 83 208 108 HOH HOH . F 5 HOH A 84 209 109 HOH HOH . F 5 HOH A 85 210 110 HOH HOH . F 5 HOH A 86 211 112 HOH HOH . F 5 HOH A 87 212 114 HOH HOH . F 5 HOH A 88 213 115 HOH HOH . F 5 HOH A 89 214 116 HOH HOH . F 5 HOH A 90 215 117 HOH HOH . F 5 HOH A 91 216 119 HOH HOH . F 5 HOH A 92 217 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 YEN . . . B 2 8.379 -11 2.586 1 13.28 ? C1 YEN 1 A 1 HETATM 2 C C2 YEN . . . B 2 8.955 -11.294 3.816 1 14.99 ? C2 YEN 1 A 1 HETATM 3 C C3 YEN . . . B 2 10.271 -10.936 4.087 1 14.29 ? C3 YEN 1 A 1 HETATM 4 C C4 YEN . . . B 2 11.015 -10.288 3.105 1 15.77 ? C4 YEN 1 A 1 HETATM 5 C C5 YEN . . . B 2 10.439 -9.99 1.873 1 13.03 ? C5 YEN 1 A 1 HETATM 6 C C6 YEN . . . B 2 9.118 -10.338 1.612 1 14.05 ? C6 YEN 1 A 1 HETATM 7 O O1 YEN . . . B 2 10.749 -11.192 5.336 1 15.7 ? O1 YEN 1 A 1 HETATM 8 P P1 YEN . . . B 2 12.256 -10.704 5.627 1 13.88 ? P1 YEN 1 A 1 HETATM 9 O O2 YEN . . . B 2 12.349 -9.137 5.271 1 15.32 ? O2 YEN 1 A 1 HETATM 10 O O3 YEN . . . B 2 12.406 -10.79 7.228 1 16.84 ? O3 YEN 1 A 1 HETATM 11 O O4 YEN . . . B 2 13.289 -11.513 4.943 1 16.02 ? O4 YEN 1 A 1 HETATM 12 C C7 YEN . . . B 2 8.424 -9.903 0.318 1 12.81 ? C7 YEN 1 A 1 HETATM 13 C C8 YEN . . . B 2 8.132 -8.402 0.374 1 15.18 ? C8 YEN 1 A 1 HETATM 14 C C9 YEN . . . B 2 7.297 -7.958 -0.831 1 14.33 ? C9 YEN 1 A 1 HETATM 15 O O5 YEN . . . B 2 6.116 -8.283 -0.941 1 12.72 ? O5 YEN 1 A 1 HETATM 16 C C10 YEN . . . B 2 7.365 -8.081 1.659 1 18.78 ? C10 YEN 1 A 1 HETATM 17 C C11 YEN . . . B 2 7.703 -6.67 2.145 1 24.13 ? C11 YEN 1 A 1 HETATM 18 N N1 YEN . . . B 2 6.706 -5.79 2.098 1 26.33 ? N1 YEN 1 A 1 HETATM 19 C C12 YEN . . . B 2 6.999 -4.434 2.585 1 29.97 ? C12 YEN 1 A 1 HETATM 20 O O7 YEN . . . B 2 8.835 -6.403 2.544 1 26.35 ? O7 YEN 1 A 1 HETATM 21 N N2 YEN . . . B 2 7.941 -7.207 -1.72 1 11.86 ? N2 YEN 1 A 1 HETATM 22 C C13 YEN . . . B 2 7.291 -6.667 -2.923 1 10.37 ? C13 YEN 1 A 1 HETATM 23 C C14 YEN . . . B 2 6.735 -7.777 -3.82 1 10.24 ? C14 YEN 1 A 1 HETATM 24 O O8 YEN . . . B 2 5.748 -7.575 -4.525 1 8.08 ? O8 YEN 1 A 1 HETATM 25 C C15 YEN . . . B 2 8.292 -5.826 -3.718 1 11.97 ? C15 YEN 1 A 1 HETATM 26 C C16 YEN . . . B 2 8.849 -4.665 -2.891 1 13.43 ? C16 YEN 1 A 1 HETATM 27 C C17 YEN . . . B 2 7.766 -3.641 -2.544 1 15.16 ? C17 YEN 1 A 1 HETATM 28 O O9 YEN . . . B 2 6.965 -3.327 -3.45 1 15.5 ? O9 YEN 1 A 1 HETATM 29 O O10 YEN . . . B 2 7.771 -3.186 -1.379 1 17.38 ? O10 YEN 1 A 1 HETATM 30 N N3 YEN . . . B 2 7.385 -8.938 -3.788 1 9.71 ? N3 YEN 1 A 1 HETATM 31 C C18 YEN . . . B 2 6.942 -10.071 -4.613 1 9.66 ? C18 YEN 1 A 1 HETATM 32 C C19 YEN . . . B 2 6.222 -11.109 -3.75 1 10.5 ? C19 YEN 1 A 1 HETATM 33 O O12 YEN . . . B 2 6.167 -12.289 -4.093 1 10.47 ? O12 YEN 1 A 1 HETATM 34 C C20 YEN . . . B 2 8.14 -10.71 -5.32 1 8.89 ? C20 YEN 1 A 1 HETATM 35 C C21 YEN . . . B 2 9.166 -11.248 -4.321 1 7.83 ? C21 YEN 1 A 1 HETATM 36 O O13 YEN . . . B 2 9.247 -10.785 -3.185 1 9.98 ? O13 YEN 1 A 1 HETATM 37 N N4 YEN . . . B 2 9.935 -12.232 -4.779 1 6.59 ? N4 YEN 1 A 1 HETATM 38 N N5 YEN . . . B 2 5.669 -10.632 -2.639 1 9.31 ? N5 YEN 1 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 38 #