data_3KFN
#
_model_server_result.job_id            HByCMZbLDKvZRRzUNDbLXQ 
_model_server_result.datetime_utc      '2024-11-30 23:43:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kfn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":302}' 
#
_entry.id    3KFN 
#
_exptl.entry_id    3KFN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3KFN 
_cell.length_a            58.95 
_cell.length_b            85.57 
_cell.length_c            46.49 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KFN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 94 A GLY 94 1_555 H K K . A K 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? 
metalc ? metalc2 A OG1 THR 96 A THR 96 1_555 H K K . A K 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? 
metalc ? metalc3 A O ASN 98 A ASN 98 1_555 K K K . B K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? 
metalc ? metalc4 H K K . A K 307 1_555 L O HOH . A HOH 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? 
metalc ? metalc5 H K K . A K 307 1_555 B O ASN 98 B ASN 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? 
metalc ? metalc6 H K K . A K 307 1_555 M O HOH . B HOH 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.496 ? 
metalc ? metalc7 H K K . A K 307 1_555 M O HOH . B HOH 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.319 ? 
metalc ? metalc8 B O GLY 94 B GLY 94 1_555 K K K . B K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? 
metalc ? metalc9 B OG1 THR 96 B THR 96 1_555 K K K . B K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.057 ? 
metalc ? metalc10 K K K . B K 306 1_555 M O HOH . B HOH 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? 
metalc ? metalc11 K K K . B K 306 1_555 M O HOH . B HOH 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 247 n n 
S C1 DMS sing 248 n n 
S C2 DMS sing 249 n n 
C1 H11 DMS sing 250 n n 
C1 H12 DMS sing 251 n n 
C1 H13 DMS sing 252 n n 
C2 H21 DMS sing 253 n n 
C2 H22 DMS sing 254 n n 
C2 H23 DMS sing 255 n n 
#
_atom_sites.entry_id                     3KFN 
_atom_sites.fract_transf_matrix[1][1]    0.016964 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011686 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02151 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 3TL A 1 200 200 3TL 3TL . 
D 3 4DX A 1 201 201 4DX 4DX . 
E 4 DMS A 1 303 303 DMS DMS . 
F 4 DMS A 1 304 304 DMS DMS . 
G 4 DMS A 1 305 305 DMS DMS . 
H 5 K A 1 307 307 K K . 
I 6 BME B 1 300 300 BME BME . 
J 4 DMS B 1 302 302 DMS DMS . 
K 5 K B 1 306 306 K K . 
L 7 HOH A 1 204 303 HOH HOH . 
L 7 HOH A 2 205 205 HOH HOH . 
L 7 HOH A 3 206 206 HOH HOH . 
L 7 HOH A 4 207 305 HOH HOH . 
L 7 HOH A 5 209 209 HOH HOH . 
L 7 HOH A 6 213 213 HOH HOH . 
L 7 HOH A 7 214 214 HOH HOH . 
L 7 HOH A 8 215 215 HOH HOH . 
L 7 HOH A 9 217 217 HOH HOH . 
L 7 HOH A 10 218 218 HOH HOH . 
L 7 HOH A 11 219 219 HOH HOH . 
L 7 HOH A 12 223 223 HOH HOH . 
L 7 HOH A 13 224 224 HOH HOH . 
L 7 HOH A 14 226 226 HOH HOH . 
L 7 HOH A 15 229 229 HOH HOH . 
L 7 HOH A 16 231 231 HOH HOH . 
L 7 HOH A 17 233 233 HOH HOH . 
L 7 HOH A 18 235 235 HOH HOH . 
L 7 HOH A 19 238 238 HOH HOH . 
L 7 HOH A 20 240 240 HOH HOH . 
L 7 HOH A 21 242 242 HOH HOH . 
L 7 HOH A 22 249 249 HOH HOH . 
L 7 HOH A 23 250 250 HOH HOH . 
L 7 HOH A 24 252 252 HOH HOH . 
L 7 HOH A 25 256 256 HOH HOH . 
L 7 HOH A 26 258 258 HOH HOH . 
L 7 HOH A 27 259 259 HOH HOH . 
L 7 HOH A 28 260 260 HOH HOH . 
L 7 HOH A 29 263 263 HOH HOH . 
L 7 HOH A 30 266 266 HOH HOH . 
L 7 HOH A 31 268 268 HOH HOH . 
L 7 HOH A 32 271 271 HOH HOH . 
L 7 HOH A 33 273 273 HOH HOH . 
L 7 HOH A 34 276 276 HOH HOH . 
L 7 HOH A 35 279 279 HOH HOH . 
L 7 HOH A 36 281 281 HOH HOH . 
L 7 HOH A 37 282 282 HOH HOH . 
L 7 HOH A 38 285 285 HOH HOH . 
L 7 HOH A 39 287 287 HOH HOH . 
L 7 HOH A 40 288 288 HOH HOH . 
L 7 HOH A 41 289 289 HOH HOH . 
L 7 HOH A 42 290 290 HOH HOH . 
L 7 HOH A 43 292 292 HOH HOH . 
L 7 HOH A 44 294 294 HOH HOH . 
L 7 HOH A 45 295 295 HOH HOH . 
L 7 HOH A 46 296 296 HOH HOH . 
L 7 HOH A 47 298 298 HOH HOH . 
L 7 HOH A 48 301 301 HOH HOH . 
L 7 HOH A 49 311 311 HOH HOH . 
L 7 HOH A 50 312 312 HOH HOH . 
L 7 HOH A 51 313 313 HOH HOH . 
L 7 HOH A 52 316 316 HOH HOH . 
L 7 HOH A 53 317 317 HOH HOH . 
L 7 HOH A 54 318 318 HOH HOH . 
L 7 HOH A 55 321 321 HOH HOH . 
L 7 HOH A 56 323 323 HOH HOH . 
L 7 HOH A 57 325 325 HOH HOH . 
L 7 HOH A 58 327 327 HOH HOH . 
L 7 HOH A 59 329 329 HOH HOH . 
L 7 HOH A 60 330 330 HOH HOH . 
L 7 HOH A 61 334 334 HOH HOH . 
L 7 HOH A 62 335 335 HOH HOH . 
L 7 HOH A 63 337 337 HOH HOH . 
L 7 HOH A 64 338 338 HOH HOH . 
L 7 HOH A 65 339 339 HOH HOH . 
L 7 HOH A 66 342 342 HOH HOH . 
L 7 HOH A 67 347 347 HOH HOH . 
L 7 HOH A 68 349 349 HOH HOH . 
L 7 HOH A 69 351 351 HOH HOH . 
L 7 HOH A 70 352 352 HOH HOH . 
L 7 HOH A 71 353 353 HOH HOH . 
L 7 HOH A 72 355 355 HOH HOH . 
L 7 HOH A 73 356 356 HOH HOH . 
L 7 HOH A 74 357 357 HOH HOH . 
L 7 HOH A 75 358 358 HOH HOH . 
L 7 HOH A 76 361 361 HOH HOH . 
L 7 HOH A 77 364 364 HOH HOH . 
L 7 HOH A 78 365 365 HOH HOH . 
L 7 HOH A 79 368 368 HOH HOH . 
L 7 HOH A 80 371 371 HOH HOH . 
L 7 HOH A 81 372 372 HOH HOH . 
L 7 HOH A 82 374 374 HOH HOH . 
L 7 HOH A 83 376 376 HOH HOH . 
L 7 HOH A 84 377 377 HOH HOH . 
L 7 HOH A 85 379 379 HOH HOH . 
L 7 HOH A 86 380 380 HOH HOH . 
L 7 HOH A 87 382 382 HOH HOH . 
L 7 HOH A 88 383 383 HOH HOH . 
L 7 HOH A 89 387 387 HOH HOH . 
L 7 HOH A 90 388 388 HOH HOH . 
L 7 HOH A 91 389 389 HOH HOH . 
L 7 HOH A 92 390 390 HOH HOH . 
L 7 HOH A 93 391 391 HOH HOH . 
L 7 HOH A 94 393 393 HOH HOH . 
L 7 HOH A 95 394 394 HOH HOH . 
L 7 HOH A 96 395 395 HOH HOH . 
L 7 HOH A 97 397 397 HOH HOH . 
L 7 HOH A 98 398 398 HOH HOH . 
L 7 HOH A 99 404 404 HOH HOH . 
L 7 HOH A 100 405 405 HOH HOH . 
L 7 HOH A 101 406 406 HOH HOH . 
M 7 HOH B 1 203 203 HOH HOH . 
M 7 HOH B 2 204 204 HOH HOH . 
M 7 HOH B 3 205 300 HOH HOH . 
M 7 HOH B 4 206 302 HOH HOH . 
M 7 HOH B 5 207 207 HOH HOH . 
M 7 HOH B 6 208 208 HOH HOH . 
M 7 HOH B 7 209 306 HOH HOH . 
M 7 HOH B 8 210 210 HOH HOH . 
M 7 HOH B 9 211 211 HOH HOH . 
M 7 HOH B 10 216 216 HOH HOH . 
M 7 HOH B 11 220 220 HOH HOH . 
M 7 HOH B 12 221 221 HOH HOH . 
M 7 HOH B 13 222 222 HOH HOH . 
M 7 HOH B 14 225 225 HOH HOH . 
M 7 HOH B 15 227 227 HOH HOH . 
M 7 HOH B 16 228 228 HOH HOH . 
M 7 HOH B 17 230 230 HOH HOH . 
M 7 HOH B 18 236 236 HOH HOH . 
M 7 HOH B 19 239 239 HOH HOH . 
M 7 HOH B 20 241 241 HOH HOH . 
M 7 HOH B 21 243 243 HOH HOH . 
M 7 HOH B 22 244 244 HOH HOH . 
M 7 HOH B 23 245 245 HOH HOH . 
M 7 HOH B 24 246 246 HOH HOH . 
M 7 HOH B 25 248 248 HOH HOH . 
M 7 HOH B 26 251 251 HOH HOH . 
M 7 HOH B 27 253 253 HOH HOH . 
M 7 HOH B 28 254 254 HOH HOH . 
M 7 HOH B 29 255 255 HOH HOH . 
M 7 HOH B 30 257 257 HOH HOH . 
M 7 HOH B 31 261 261 HOH HOH . 
M 7 HOH B 32 262 262 HOH HOH . 
M 7 HOH B 33 265 265 HOH HOH . 
M 7 HOH B 34 267 267 HOH HOH . 
M 7 HOH B 35 269 269 HOH HOH . 
M 7 HOH B 36 270 270 HOH HOH . 
M 7 HOH B 37 272 272 HOH HOH . 
M 7 HOH B 38 274 274 HOH HOH . 
M 7 HOH B 39 275 275 HOH HOH . 
M 7 HOH B 40 277 277 HOH HOH . 
M 7 HOH B 41 278 278 HOH HOH . 
M 7 HOH B 42 280 280 HOH HOH . 
M 7 HOH B 43 283 283 HOH HOH . 
M 7 HOH B 44 284 284 HOH HOH . 
M 7 HOH B 45 286 286 HOH HOH . 
M 7 HOH B 46 291 291 HOH HOH . 
M 7 HOH B 47 293 293 HOH HOH . 
M 7 HOH B 48 297 297 HOH HOH . 
M 7 HOH B 49 299 299 HOH HOH . 
M 7 HOH B 50 304 304 HOH HOH . 
M 7 HOH B 51 307 307 HOH HOH . 
M 7 HOH B 52 308 308 HOH HOH . 
M 7 HOH B 53 309 309 HOH HOH . 
M 7 HOH B 54 310 310 HOH HOH . 
M 7 HOH B 55 314 314 HOH HOH . 
M 7 HOH B 56 315 315 HOH HOH . 
M 7 HOH B 57 319 319 HOH HOH . 
M 7 HOH B 58 320 320 HOH HOH . 
M 7 HOH B 59 322 322 HOH HOH . 
M 7 HOH B 60 324 324 HOH HOH . 
M 7 HOH B 61 326 326 HOH HOH . 
M 7 HOH B 62 328 328 HOH HOH . 
M 7 HOH B 63 331 331 HOH HOH . 
M 7 HOH B 64 332 332 HOH HOH . 
M 7 HOH B 65 333 333 HOH HOH . 
M 7 HOH B 66 336 336 HOH HOH . 
M 7 HOH B 67 340 340 HOH HOH . 
M 7 HOH B 68 341 341 HOH HOH . 
M 7 HOH B 69 343 343 HOH HOH . 
M 7 HOH B 70 344 344 HOH HOH . 
M 7 HOH B 71 345 345 HOH HOH . 
M 7 HOH B 72 346 346 HOH HOH . 
M 7 HOH B 73 348 348 HOH HOH . 
M 7 HOH B 74 350 350 HOH HOH . 
M 7 HOH B 75 354 354 HOH HOH . 
M 7 HOH B 76 359 359 HOH HOH . 
M 7 HOH B 77 360 360 HOH HOH . 
M 7 HOH B 78 362 362 HOH HOH . 
M 7 HOH B 79 363 363 HOH HOH . 
M 7 HOH B 80 366 366 HOH HOH . 
M 7 HOH B 81 367 367 HOH HOH . 
M 7 HOH B 82 369 369 HOH HOH . 
M 7 HOH B 83 370 370 HOH HOH . 
M 7 HOH B 84 373 373 HOH HOH . 
M 7 HOH B 85 375 375 HOH HOH . 
M 7 HOH B 86 378 378 HOH HOH . 
M 7 HOH B 87 381 381 HOH HOH . 
M 7 HOH B 88 384 384 HOH HOH . 
M 7 HOH B 89 385 385 HOH HOH . 
M 7 HOH B 90 386 386 HOH HOH . 
M 7 HOH B 91 392 392 HOH HOH . 
M 7 HOH B 92 396 396 HOH HOH . 
M 7 HOH B 93 399 399 HOH HOH . 
M 7 HOH B 94 400 400 HOH HOH . 
M 7 HOH B 95 401 401 HOH HOH . 
M 7 HOH B 96 402 402 HOH HOH . 
M 7 HOH B 97 403 403 HOH HOH . 
M 7 HOH B 98 407 407 HOH HOH . 
M 7 HOH B 99 408 408 HOH HOH . 
M 7 HOH B 100 409 409 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . J 4 18.222 22.825 42.186 1 61.53 ? S DMS 302 B 1 
HETATM 2 O O DMS . . . J 4 16.646 23.207 42.714 1 60.08 ? O DMS 302 B 1 
HETATM 3 C C1 DMS . . . J 4 18.877 21.23 42.702 1 60.79 ? C1 DMS 302 B 1 
HETATM 4 C C2 DMS . . . J 4 18.393 22.705 40.432 1 60.87 ? C2 DMS 302 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           4 
#