data_3KFP # _model_server_result.job_id t8F9iLDFxUyv9AI8ldss-Q _model_server_result.datetime_utc '2024-11-05 00:28:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kfp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 3KFP # _exptl.entry_id 3KFP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KFP _cell.length_a 62.39 _cell.length_b 62.39 _cell.length_c 82.06 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KFP _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 27.353333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 67 A CYS 67 1_555 F S2 BME . A BME 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? covale ? covale2 B C2 3TL . A 3TL 200 1_555 B C2 3TL . A 3TL 200 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 225 n n S C1 DMS sing 226 n n S C2 DMS sing 227 n n C1 H11 DMS sing 228 n n C1 H12 DMS sing 229 n n C1 H13 DMS sing 230 n n C2 H21 DMS sing 231 n n C2 H22 DMS sing 232 n n C2 H23 DMS sing 233 n n # _atom_sites.entry_id 3KFP _atom_sites.fract_transf_matrix[1][1] 0.016028 _atom_sites.fract_transf_matrix[1][2] 0.009254 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018508 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3TL A 1 200 200 3TL 3TL . C 3 DMS A 1 300 300 DMS DMS . D 3 DMS A 1 301 301 DMS DMS . E 3 DMS A 1 302 302 DMS DMS . F 4 BME A 1 303 303 BME BME . G 5 HOH A 1 305 305 HOH HOH . G 5 HOH A 2 306 306 HOH HOH . G 5 HOH A 3 307 307 HOH HOH . G 5 HOH A 4 309 309 HOH HOH . G 5 HOH A 5 310 310 HOH HOH . G 5 HOH A 6 312 312 HOH HOH . G 5 HOH A 7 313 313 HOH HOH . G 5 HOH A 8 314 314 HOH HOH . G 5 HOH A 9 315 315 HOH HOH . G 5 HOH A 10 316 316 HOH HOH . G 5 HOH A 11 317 317 HOH HOH . G 5 HOH A 12 318 318 HOH HOH . G 5 HOH A 13 319 319 HOH HOH . G 5 HOH A 14 320 320 HOH HOH . G 5 HOH A 15 321 321 HOH HOH . G 5 HOH A 16 322 322 HOH HOH . G 5 HOH A 17 324 324 HOH HOH . G 5 HOH A 18 325 325 HOH HOH . G 5 HOH A 19 326 326 HOH HOH . G 5 HOH A 20 327 327 HOH HOH . G 5 HOH A 21 328 328 HOH HOH . G 5 HOH A 22 329 329 HOH HOH . G 5 HOH A 23 330 330 HOH HOH . G 5 HOH A 24 332 332 HOH HOH . G 5 HOH A 25 333 333 HOH HOH . G 5 HOH A 26 334 334 HOH HOH . G 5 HOH A 27 335 335 HOH HOH . G 5 HOH A 28 336 336 HOH HOH . G 5 HOH A 29 337 337 HOH HOH . G 5 HOH A 30 338 338 HOH HOH . G 5 HOH A 31 339 339 HOH HOH . G 5 HOH A 32 340 340 HOH HOH . G 5 HOH A 33 342 342 HOH HOH . G 5 HOH A 34 343 343 HOH HOH . G 5 HOH A 35 344 344 HOH HOH . G 5 HOH A 36 345 345 HOH HOH . G 5 HOH A 37 346 346 HOH HOH . G 5 HOH A 38 347 347 HOH HOH . G 5 HOH A 39 348 348 HOH HOH . G 5 HOH A 40 349 349 HOH HOH . G 5 HOH A 41 351 351 HOH HOH . G 5 HOH A 42 352 352 HOH HOH . G 5 HOH A 43 353 353 HOH HOH . G 5 HOH A 44 354 354 HOH HOH . G 5 HOH A 45 355 355 HOH HOH . G 5 HOH A 46 356 356 HOH HOH . G 5 HOH A 47 357 357 HOH HOH . G 5 HOH A 48 358 358 HOH HOH . G 5 HOH A 49 359 359 HOH HOH . G 5 HOH A 50 360 360 HOH HOH . G 5 HOH A 51 361 361 HOH HOH . G 5 HOH A 52 362 362 HOH HOH . G 5 HOH A 53 363 363 HOH HOH . G 5 HOH A 54 364 364 HOH HOH . G 5 HOH A 55 365 365 HOH HOH . G 5 HOH A 56 366 366 HOH HOH . G 5 HOH A 57 367 367 HOH HOH . G 5 HOH A 58 368 368 HOH HOH . G 5 HOH A 59 369 369 HOH HOH . G 5 HOH A 60 370 370 HOH HOH . G 5 HOH A 61 371 371 HOH HOH . G 5 HOH A 62 372 372 HOH HOH . G 5 HOH A 63 373 373 HOH HOH . G 5 HOH A 64 374 374 HOH HOH . G 5 HOH A 65 375 375 HOH HOH . G 5 HOH A 66 376 376 HOH HOH . G 5 HOH A 67 377 377 HOH HOH . G 5 HOH A 68 378 378 HOH HOH . G 5 HOH A 69 379 379 HOH HOH . G 5 HOH A 70 380 380 HOH HOH . G 5 HOH A 71 381 381 HOH HOH . G 5 HOH A 72 382 382 HOH HOH . G 5 HOH A 73 383 383 HOH HOH . G 5 HOH A 74 384 384 HOH HOH . G 5 HOH A 75 385 385 HOH HOH . G 5 HOH A 76 386 386 HOH HOH . G 5 HOH A 77 387 387 HOH HOH . G 5 HOH A 78 388 388 HOH HOH . G 5 HOH A 79 389 389 HOH HOH . G 5 HOH A 80 390 390 HOH HOH . G 5 HOH A 81 391 391 HOH HOH . G 5 HOH A 82 392 392 HOH HOH . G 5 HOH A 83 393 393 HOH HOH . G 5 HOH A 84 394 394 HOH HOH . G 5 HOH A 85 395 395 HOH HOH . G 5 HOH A 86 396 396 HOH HOH . G 5 HOH A 87 397 397 HOH HOH . G 5 HOH A 88 398 398 HOH HOH . G 5 HOH A 89 399 399 HOH HOH . G 5 HOH A 90 400 400 HOH HOH . G 5 HOH A 91 401 401 HOH HOH . G 5 HOH A 92 402 402 HOH HOH . G 5 HOH A 93 403 403 HOH HOH . G 5 HOH A 94 404 404 HOH HOH . G 5 HOH A 95 405 405 HOH HOH . G 5 HOH A 96 406 406 HOH HOH . G 5 HOH A 97 407 407 HOH HOH . G 5 HOH A 98 408 408 HOH HOH . G 5 HOH A 99 409 409 HOH HOH . G 5 HOH A 100 410 410 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 -1.702 -34.682 4.259 1 51.82 ? S DMS 300 A 1 HETATM 2 O O DMS . . . C 3 -3.286 -34.334 3.815 1 52.32 ? O DMS 300 A 1 HETATM 3 C C1 DMS . . . C 3 -1.679 -36.188 5.235 1 48.7 ? C1 DMS 300 A 1 HETATM 4 C C2 DMS . . . C 3 -0.515 -34.997 2.97 1 51.59 ? C2 DMS 300 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #