data_3KFR # _model_server_result.job_id axVSXSxChQ7rCF_kHXp5iA _model_server_result.datetime_utc '2024-11-14 20:42:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kfr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 3KFR # _exptl.entry_id 3KFR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KFR _cell.length_a 28.72 _cell.length_b 65.57 _cell.length_c 92.36 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KFR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 67 A CYS 67 1_555 D S2 BME . A BME 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? covale ? covale2 B SG CYS 67 B CYS 67 1_555 F S2 BME . B BME 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 223 n n C1 O1 BME sing 224 n n C1 H11 BME sing 225 n n C1 H12 BME sing 226 n n C2 S2 BME sing 227 n n C2 H21 BME sing 228 n n C2 H22 BME sing 229 n n O1 HO1 BME sing 230 n n S2 HS2 BME sing 231 n n # _atom_sites.entry_id 3KFR _atom_sites.fract_transf_matrix[1][1] 0.034819 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015251 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010827 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3TL A 1 200 200 3TL 3TL . D 3 BME A 1 202 202 BME BME . E 4 1F1 B 1 201 201 1F1 1F1 . F 3 BME B 1 203 203 BME BME . G 5 HOH A 1 204 204 HOH HOH . G 5 HOH A 2 206 206 HOH HOH . G 5 HOH A 3 211 211 HOH HOH . G 5 HOH A 4 213 213 HOH HOH . G 5 HOH A 5 214 214 HOH HOH . G 5 HOH A 6 217 217 HOH HOH . G 5 HOH A 7 219 219 HOH HOH . G 5 HOH A 8 220 220 HOH HOH . G 5 HOH A 9 224 224 HOH HOH . G 5 HOH A 10 225 225 HOH HOH . G 5 HOH A 11 226 226 HOH HOH . G 5 HOH A 12 229 229 HOH HOH . G 5 HOH A 13 231 231 HOH HOH . G 5 HOH A 14 232 232 HOH HOH . G 5 HOH A 15 233 233 HOH HOH . G 5 HOH A 16 235 235 HOH HOH . G 5 HOH A 17 236 236 HOH HOH . G 5 HOH A 18 237 237 HOH HOH . G 5 HOH A 19 240 240 HOH HOH . G 5 HOH A 20 241 241 HOH HOH . G 5 HOH A 21 244 244 HOH HOH . G 5 HOH A 22 246 246 HOH HOH . G 5 HOH A 23 247 247 HOH HOH . G 5 HOH A 24 250 250 HOH HOH . G 5 HOH A 25 253 253 HOH HOH . G 5 HOH A 26 255 255 HOH HOH . G 5 HOH A 27 258 258 HOH HOH . G 5 HOH A 28 259 259 HOH HOH . G 5 HOH A 29 260 260 HOH HOH . G 5 HOH A 30 263 263 HOH HOH . G 5 HOH A 31 266 266 HOH HOH . G 5 HOH A 32 272 272 HOH HOH . G 5 HOH A 33 276 276 HOH HOH . G 5 HOH A 34 277 277 HOH HOH . G 5 HOH A 35 281 281 HOH HOH . G 5 HOH A 36 283 283 HOH HOH . G 5 HOH A 37 286 286 HOH HOH . G 5 HOH A 38 287 287 HOH HOH . G 5 HOH A 39 288 288 HOH HOH . G 5 HOH A 40 289 289 HOH HOH . G 5 HOH A 41 290 290 HOH HOH . G 5 HOH A 42 292 292 HOH HOH . G 5 HOH A 43 295 295 HOH HOH . G 5 HOH A 44 298 298 HOH HOH . G 5 HOH A 45 299 299 HOH HOH . G 5 HOH A 46 300 300 HOH HOH . G 5 HOH A 47 302 302 HOH HOH . G 5 HOH A 48 314 314 HOH HOH . G 5 HOH A 49 316 316 HOH HOH . G 5 HOH A 50 317 317 HOH HOH . G 5 HOH A 51 320 320 HOH HOH . G 5 HOH A 52 329 329 HOH HOH . G 5 HOH A 53 330 330 HOH HOH . G 5 HOH A 54 331 331 HOH HOH . G 5 HOH A 55 332 332 HOH HOH . G 5 HOH A 56 334 334 HOH HOH . G 5 HOH A 57 337 337 HOH HOH . G 5 HOH A 58 339 339 HOH HOH . G 5 HOH A 59 340 340 HOH HOH . G 5 HOH A 60 342 342 HOH HOH . G 5 HOH A 61 345 345 HOH HOH . G 5 HOH A 62 349 349 HOH HOH . G 5 HOH A 63 350 350 HOH HOH . G 5 HOH A 64 354 354 HOH HOH . G 5 HOH A 65 355 355 HOH HOH . G 5 HOH A 66 356 356 HOH HOH . G 5 HOH A 67 358 358 HOH HOH . G 5 HOH A 68 361 361 HOH HOH . G 5 HOH A 69 362 362 HOH HOH . G 5 HOH A 70 364 364 HOH HOH . G 5 HOH A 71 365 365 HOH HOH . G 5 HOH A 72 366 366 HOH HOH . G 5 HOH A 73 367 367 HOH HOH . G 5 HOH A 74 368 368 HOH HOH . G 5 HOH A 75 369 369 HOH HOH . G 5 HOH A 76 371 371 HOH HOH . G 5 HOH A 77 373 373 HOH HOH . G 5 HOH A 78 375 375 HOH HOH . G 5 HOH A 79 380 380 HOH HOH . G 5 HOH A 80 381 381 HOH HOH . G 5 HOH A 81 382 382 HOH HOH . G 5 HOH A 82 383 383 HOH HOH . G 5 HOH A 83 384 384 HOH HOH . G 5 HOH A 84 385 385 HOH HOH . H 5 HOH B 1 205 205 HOH HOH . H 5 HOH B 2 207 207 HOH HOH . H 5 HOH B 3 208 208 HOH HOH . H 5 HOH B 4 209 209 HOH HOH . H 5 HOH B 5 210 210 HOH HOH . H 5 HOH B 6 212 212 HOH HOH . H 5 HOH B 7 215 215 HOH HOH . H 5 HOH B 8 216 216 HOH HOH . H 5 HOH B 9 218 218 HOH HOH . H 5 HOH B 10 221 221 HOH HOH . H 5 HOH B 11 222 222 HOH HOH . H 5 HOH B 12 223 223 HOH HOH . H 5 HOH B 13 227 227 HOH HOH . H 5 HOH B 14 234 234 HOH HOH . H 5 HOH B 15 238 238 HOH HOH . H 5 HOH B 16 239 239 HOH HOH . H 5 HOH B 17 243 243 HOH HOH . H 5 HOH B 18 245 245 HOH HOH . H 5 HOH B 19 248 248 HOH HOH . H 5 HOH B 20 249 249 HOH HOH . H 5 HOH B 21 252 252 HOH HOH . H 5 HOH B 22 254 254 HOH HOH . H 5 HOH B 23 256 256 HOH HOH . H 5 HOH B 24 257 257 HOH HOH . H 5 HOH B 25 261 261 HOH HOH . H 5 HOH B 26 262 262 HOH HOH . H 5 HOH B 27 264 264 HOH HOH . H 5 HOH B 28 265 265 HOH HOH . H 5 HOH B 29 269 269 HOH HOH . H 5 HOH B 30 270 270 HOH HOH . H 5 HOH B 31 273 273 HOH HOH . H 5 HOH B 32 274 274 HOH HOH . H 5 HOH B 33 275 275 HOH HOH . H 5 HOH B 34 278 278 HOH HOH . H 5 HOH B 35 280 280 HOH HOH . H 5 HOH B 36 282 282 HOH HOH . H 5 HOH B 37 284 284 HOH HOH . H 5 HOH B 38 285 285 HOH HOH . H 5 HOH B 39 291 291 HOH HOH . H 5 HOH B 40 293 293 HOH HOH . H 5 HOH B 41 294 294 HOH HOH . H 5 HOH B 42 296 296 HOH HOH . H 5 HOH B 43 297 297 HOH HOH . H 5 HOH B 44 301 301 HOH HOH . H 5 HOH B 45 303 303 HOH HOH . H 5 HOH B 46 306 306 HOH HOH . H 5 HOH B 47 307 307 HOH HOH . H 5 HOH B 48 308 308 HOH HOH . H 5 HOH B 49 309 309 HOH HOH . H 5 HOH B 50 310 310 HOH HOH . H 5 HOH B 51 311 311 HOH HOH . H 5 HOH B 52 312 312 HOH HOH . H 5 HOH B 53 313 313 HOH HOH . H 5 HOH B 54 319 319 HOH HOH . H 5 HOH B 55 322 322 HOH HOH . H 5 HOH B 56 323 323 HOH HOH . H 5 HOH B 57 324 324 HOH HOH . H 5 HOH B 58 325 325 HOH HOH . H 5 HOH B 59 326 326 HOH HOH . H 5 HOH B 60 327 327 HOH HOH . H 5 HOH B 61 328 328 HOH HOH . H 5 HOH B 62 333 333 HOH HOH . H 5 HOH B 63 335 335 HOH HOH . H 5 HOH B 64 336 336 HOH HOH . H 5 HOH B 65 338 338 HOH HOH . H 5 HOH B 66 341 341 HOH HOH . H 5 HOH B 67 343 343 HOH HOH . H 5 HOH B 68 344 344 HOH HOH . H 5 HOH B 69 346 346 HOH HOH . H 5 HOH B 70 347 347 HOH HOH . H 5 HOH B 71 348 348 HOH HOH . H 5 HOH B 72 351 351 HOH HOH . H 5 HOH B 73 352 352 HOH HOH . H 5 HOH B 74 353 353 HOH HOH . H 5 HOH B 75 357 357 HOH HOH . H 5 HOH B 76 359 359 HOH HOH . H 5 HOH B 77 360 360 HOH HOH . H 5 HOH B 78 363 363 HOH HOH . H 5 HOH B 79 370 370 HOH HOH . H 5 HOH B 80 372 372 HOH HOH . H 5 HOH B 81 374 374 HOH HOH . H 5 HOH B 82 376 376 HOH HOH . H 5 HOH B 83 377 377 HOH HOH . H 5 HOH B 84 378 378 HOH HOH . H 5 HOH B 85 379 379 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . D 3 -26.091 -8.068 -4.873 1 31.11 ? C1 BME 202 A 1 HETATM 2 C C2 BME . . . D 3 -26.511 -7.069 -3.799 1 28.97 ? C2 BME 202 A 1 HETATM 3 O O1 BME . . . D 3 -24.756 -8.485 -4.661 1 32.68 ? O1 BME 202 A 1 HETATM 4 S S2 BME . . . D 3 -25.799 -7.519 -2.202 1 29.82 ? S2 BME 202 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #