data_3KG2 # _model_server_result.job_id vQSDhPQcMt-m_OpkvcivzQ _model_server_result.datetime_utc '2024-11-29 00:58:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kg2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":833}' # _entry.id 3KG2 # _exptl.entry_id 3KG2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 409.254 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 85.32 _cell.angle_beta 84.75 _cell.angle_gamma 78.92 _cell.entry_id 3KG2 _cell.length_a 90.715 _cell.length_b 109.848 _cell.length_c 161.13 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KG2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 BMA BMA C1 O1 . O3 HO3 . sing 4 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E NAG 1 E 1 NAG A 820 NAG 2 n E NAG 2 E 2 NAG A 821 NAG 2 n E BMA 3 E 3 BMA A 822 MAN 2 n E BMA 4 E 4 BMA A 823 MAN 2 n F NAG 1 F 1 NAG B 820 NAG 2 n F NAG 2 F 2 NAG B 821 NAG 2 n F BMA 3 F 3 BMA B 822 MAN 2 n F BMA 4 F 4 BMA B 823 MAN 3 n G NAG 1 G 1 NAG C 820 NAG 3 n G NAG 2 G 2 NAG C 821 NAG 3 n G BMA 3 G 3 BMA C 822 MAN 3 n H NAG 1 H 1 NAG D 820 NAG 3 n H NAG 2 H 2 NAG D 821 NAG 3 n H BMA 3 H 3 BMA D 822 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 63 1_555 A SG CYS 306 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 709 A CYS 718 1_555 A SG CYS 764 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 54 B CYS 63 1_555 B SG CYS 306 B CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 709 B CYS 718 1_555 B SG CYS 764 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 C SG CYS 54 C CYS 63 1_555 C SG CYS 306 C CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 C SG CYS 709 C CYS 718 1_555 C SG CYS 764 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 D SG CYS 54 D CYS 63 1_555 D SG CYS 306 D CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 D SG CYS 709 D CYS 718 1_555 D SG CYS 764 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 346 A ASN 355 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale2 B ND2 ASN 346 B ASN 355 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale3 C ND2 ASN 346 C ASN 355 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale4 D ND2 ASN 346 D ASN 355 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale5 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale6 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale7 E O3 BMA . E BMA 3 1_555 E C1 BMA . E BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale8 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale9 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale10 F O3 BMA . F BMA 3 1_555 F C1 BMA . F BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale11 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale12 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale13 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale14 H O4 NAG . H NAG 2 1_555 H C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? # _chem_comp.formula 'C14 H15 F3 N3 O6 P' _chem_comp.formula_weight 409.254 _chem_comp.id ZK1 _chem_comp.mon_nstd_flag . _chem_comp.name '{[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[[3,4-Dihydro-7-(4-morpholinyl)-2,3-dioxo-6-(trifluorom ethyl)-1(2H)-quinoxalinyl]methyl]phosphonic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAT OAA ZK1 doub 428 n n CAU OAB ZK1 doub 429 n n OAC PBA ZK1 doub 430 n n OAD PBA ZK1 sing 431 n n OAD HOAD ZK1 sing 432 n n PBA OAE ZK1 sing 433 n n OAE HOAE ZK1 sing 434 n n FAF CAZ ZK1 sing 435 n n CAZ FAG ZK1 sing 436 n n CAZ FAH ZK1 sing 437 n n CAR CAI ZK1 doub 438 n y CAI CAW ZK1 sing 439 n y CAI HAI ZK1 sing 440 n n CAS CAJ ZK1 doub 441 n y CAJ CAV ZK1 sing 442 n y CAJ HAJ ZK1 sing 443 n n CAK CAM ZK1 sing 444 n n CAK OAQ ZK1 sing 445 n n CAK HAK ZK1 sing 446 n n CAK HAKA ZK1 sing 447 n n OAQ CAL ZK1 sing 448 n n CAL CAN ZK1 sing 449 n n CAL HAL ZK1 sing 450 n n CAL HALA ZK1 sing 451 n n CAM NAX ZK1 sing 452 n n CAM HAM ZK1 sing 453 n n CAM HAMA ZK1 sing 454 n n NAX CAN ZK1 sing 455 n n CAN HAN ZK1 sing 456 n n CAN HANA ZK1 sing 457 n n PBA CAO ZK1 sing 458 n n NAY CAO ZK1 sing 459 n n CAO HAO ZK1 sing 460 n n CAO HAOA ZK1 sing 461 n n CAV NAP ZK1 sing 462 n n NAP CAT ZK1 sing 463 n n NAP HNAP ZK1 sing 464 n n NAX CAR ZK1 sing 465 n n CAS CAR ZK1 sing 466 n y CAZ CAS ZK1 sing 467 n n CAT CAU ZK1 sing 468 n n NAY CAU ZK1 sing 469 n n CAV CAW ZK1 doub 470 n y CAW NAY ZK1 sing 471 n n # _atom_sites.entry_id 3KG2 _atom_sites.fract_transf_matrix[1][1] 0.011024 _atom_sites.fract_transf_matrix[1][2] -0.002159 _atom_sites.fract_transf_matrix[1][3] -0.000873 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009276 _atom_sites.fract_transf_matrix[2][3] -0.000609 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006246 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 ZK1 A 1 833 818 ZK1 ZK . J 4 ZK1 B 1 833 818 ZK1 ZK . K 4 ZK1 C 1 833 818 ZK1 ZK . L 4 ZK1 D 1 833 818 ZK1 ZK . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA ZK1 . . . K 4 3.948 53.024 -34.691 1 162.55 ? OAA ZK1 833 C 1 HETATM 2 O OAB ZK1 . . . K 4 5.129 50.437 -34.423 1 162.55 ? OAB ZK1 833 C 1 HETATM 3 O OAC ZK1 . . . K 4 5.586 48.929 -37.622 1 162.55 ? OAC ZK1 833 C 1 HETATM 4 O OAD ZK1 . . . K 4 7.721 47.559 -37.643 1 162.55 ? OAD ZK1 833 C 1 HETATM 5 O OAE ZK1 . . . K 4 5.91 47.342 -35.66 1 162.55 ? OAE ZK1 833 C 1 HETATM 6 F FAF ZK1 . . . K 4 8.929 54.828 -40.738 1 162.55 ? FAF ZK1 833 C 1 HETATM 7 F FAG ZK1 . . . K 4 8.917 56.29 -39.061 1 162.55 ? FAG ZK1 833 C 1 HETATM 8 F FAH ZK1 . . . K 4 10.677 54.973 -39.354 1 162.55 ? FAH ZK1 833 C 1 HETATM 9 C CAI ZK1 . . . K 4 8.65 51.762 -37.542 1 162.55 ? CAI ZK1 833 C 1 HETATM 10 C CAJ ZK1 . . . K 4 7.476 54.329 -37.809 1 162.55 ? CAJ ZK1 833 C 1 HETATM 11 C CAK ZK1 . . . K 4 11.708 51.63 -41.154 1 162.55 ? CAK ZK1 833 C 1 HETATM 12 C CAL ZK1 . . . K 4 12.907 51.654 -39.193 1 162.55 ? CAL ZK1 833 C 1 HETATM 13 C CAM ZK1 . . . K 4 10.391 52.045 -40.571 1 162.55 ? CAM ZK1 833 C 1 HETATM 14 C CAN ZK1 . . . K 4 11.751 52.248 -38.353 1 162.55 ? CAN ZK1 833 C 1 HETATM 15 C CAO ZK1 . . . K 4 7.449 49.766 -35.827 1 162.55 ? CAO ZK1 833 C 1 HETATM 16 N NAP ZK1 . . . K 4 5.724 53.687 -36.265 1 162.55 ? NAP ZK1 833 C 1 HETATM 17 O OAQ ZK1 . . . K 4 12.42 50.866 -40.246 1 162.55 ? OAQ ZK1 833 C 1 HETATM 18 C CAR ZK1 . . . K 4 9.254 52.723 -38.395 1 162.55 ? CAR ZK1 833 C 1 HETATM 19 C CAS ZK1 . . . K 4 8.678 54.003 -38.534 1 162.55 ? CAS ZK1 833 C 1 HETATM 20 C CAT ZK1 . . . K 4 5.119 52.709 -35.404 1 162.55 ? CAT ZK1 833 C 1 HETATM 21 C CAU ZK1 . . . K 4 5.717 51.393 -35.267 1 162.55 ? CAU ZK1 833 C 1 HETATM 22 C CAV ZK1 . . . K 4 6.877 53.377 -36.964 1 162.55 ? CAV ZK1 833 C 1 HETATM 23 C CAW ZK1 . . . K 4 7.462 52.088 -36.827 1 162.55 ? CAW ZK1 833 C 1 HETATM 24 N NAX ZK1 . . . K 4 10.469 52.366 -39.112 1 162.55 ? NAX ZK1 833 C 1 HETATM 25 N NAY ZK1 . . . K 4 6.847 51.091 -35.949 1 162.55 ? NAY ZK1 833 C 1 HETATM 26 C CAZ ZK1 . . . K 4 9.318 55.048 -39.446 1 162.55 ? CAZ ZK1 833 C 1 HETATM 27 P PBA ZK1 . . . K 4 6.61 48.376 -36.74 1 162.55 ? PBA ZK1 833 C 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #