data_3KGL # _model_server_result.job_id i7GrmoUg0Lpviw3ORNgmYw _model_server_result.datetime_utc '2024-11-05 00:37:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kgl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":467}' # _entry.id 3KGL # _exptl.entry_id 3KGL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114 _cell.angle_gamma 90 _cell.entry_id 3KGL _cell.length_a 100.102 _cell.length_b 190.412 _cell.length_c 99.901 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KGL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,Q,R,S 1 1 D,E,F,L,M,N,O,P,T,U,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 J N N ? 2 L N N ? 2 N N N ? 2 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 7 1_555 A SG CYS 40 A CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 83 A CYS 83 1_555 A SG CYS 283 A CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 7 B CYS 7 1_555 B SG CYS 40 B CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 83 B CYS 83 1_555 B SG CYS 283 B CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 C SG CYS 7 C CYS 7 1_555 C SG CYS 40 C CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf6 C SG CYS 83 C CYS 83 1_555 C SG CYS 283 C CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 D SG CYS 7 D CYS 7 1_555 D SG CYS 40 D CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf8 D SG CYS 83 D CYS 83 1_555 D SG CYS 283 D CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 E SG CYS 7 E CYS 7 1_555 E SG CYS 40 E CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf10 E SG CYS 83 E CYS 83 1_555 E SG CYS 283 E CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 F SG CYS 7 F CYS 7 1_555 F SG CYS 40 F CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf12 F SG CYS 83 F CYS 83 1_555 F SG CYS 283 F CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3KGL _atom_sites.fract_transf_matrix[1][1] 0.00999 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004448 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010957 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GOL A 1 467 467 GOL GOL . H 3 SO4 A 1 474 474 SO4 SO4 . I 2 GOL B 1 467 467 GOL GOL . J 2 GOL C 1 467 467 GOL GOL . K 3 SO4 C 1 472 472 SO4 SO4 . L 2 GOL D 1 467 467 GOL GOL . M 3 SO4 D 1 473 473 SO4 SO4 . N 2 GOL E 1 467 467 GOL GOL . O 2 GOL F 1 467 467 GOL GOL . P 3 SO4 F 1 475 475 SO4 SO4 . Q 4 HOH A 1 571 571 HOH HOH . Q 4 HOH A 2 574 574 HOH HOH . Q 4 HOH A 3 589 589 HOH HOH . Q 4 HOH A 4 610 610 HOH HOH . Q 4 HOH A 5 619 619 HOH HOH . Q 4 HOH A 6 649 649 HOH HOH . Q 4 HOH A 7 651 651 HOH HOH . Q 4 HOH A 8 666 666 HOH HOH . Q 4 HOH A 9 667 667 HOH HOH . Q 4 HOH A 10 676 676 HOH HOH . Q 4 HOH A 11 679 679 HOH HOH . Q 4 HOH A 12 685 685 HOH HOH . Q 4 HOH A 13 686 686 HOH HOH . Q 4 HOH A 14 872 872 HOH HOH . Q 4 HOH A 15 926 926 HOH HOH . Q 4 HOH A 16 949 949 HOH HOH . Q 4 HOH A 17 958 958 HOH HOH . Q 4 HOH A 18 1047 1047 HOH HOH . Q 4 HOH A 19 1048 1048 HOH HOH . Q 4 HOH A 20 1049 1049 HOH HOH . Q 4 HOH A 21 1090 1090 HOH HOH . Q 4 HOH A 22 1091 1091 HOH HOH . Q 4 HOH A 23 1093 1093 HOH HOH . Q 4 HOH A 24 1095 1095 HOH HOH . Q 4 HOH A 25 1106 1106 HOH HOH . Q 4 HOH A 26 1115 1115 HOH HOH . Q 4 HOH A 27 1117 1117 HOH HOH . Q 4 HOH A 28 1119 1119 HOH HOH . Q 4 HOH A 29 1122 1122 HOH HOH . R 4 HOH B 1 563 563 HOH HOH . R 4 HOH B 2 569 569 HOH HOH . R 4 HOH B 3 572 572 HOH HOH . R 4 HOH B 4 582 582 HOH HOH . R 4 HOH B 5 585 585 HOH HOH . R 4 HOH B 6 593 593 HOH HOH . R 4 HOH B 7 601 601 HOH HOH . R 4 HOH B 8 606 606 HOH HOH . R 4 HOH B 9 616 616 HOH HOH . R 4 HOH B 10 621 621 HOH HOH . R 4 HOH B 11 647 647 HOH HOH . R 4 HOH B 12 650 650 HOH HOH . R 4 HOH B 13 663 663 HOH HOH . R 4 HOH B 14 675 675 HOH HOH . R 4 HOH B 15 690 690 HOH HOH . R 4 HOH B 16 704 704 HOH HOH . R 4 HOH B 17 707 707 HOH HOH . R 4 HOH B 18 808 808 HOH HOH . R 4 HOH B 19 813 813 HOH HOH . R 4 HOH B 20 844 844 HOH HOH . R 4 HOH B 21 849 849 HOH HOH . R 4 HOH B 22 862 862 HOH HOH . R 4 HOH B 23 869 869 HOH HOH . R 4 HOH B 24 873 873 HOH HOH . R 4 HOH B 25 881 881 HOH HOH . R 4 HOH B 26 906 906 HOH HOH . R 4 HOH B 27 909 909 HOH HOH . R 4 HOH B 28 920 920 HOH HOH . R 4 HOH B 29 928 928 HOH HOH . R 4 HOH B 30 935 935 HOH HOH . R 4 HOH B 31 959 959 HOH HOH . R 4 HOH B 32 986 986 HOH HOH . R 4 HOH B 33 1032 1032 HOH HOH . R 4 HOH B 34 1097 1097 HOH HOH . R 4 HOH B 35 1101 1101 HOH HOH . R 4 HOH B 36 1116 1116 HOH HOH . R 4 HOH B 37 1123 1123 HOH HOH . S 4 HOH C 1 558 558 HOH HOH . S 4 HOH C 2 562 562 HOH HOH . S 4 HOH C 3 575 575 HOH HOH . S 4 HOH C 4 581 581 HOH HOH . S 4 HOH C 5 587 587 HOH HOH . S 4 HOH C 6 602 602 HOH HOH . S 4 HOH C 7 614 614 HOH HOH . S 4 HOH C 8 615 615 HOH HOH . S 4 HOH C 9 623 623 HOH HOH . S 4 HOH C 10 668 668 HOH HOH . S 4 HOH C 11 670 670 HOH HOH . S 4 HOH C 12 677 677 HOH HOH . S 4 HOH C 13 805 805 HOH HOH . S 4 HOH C 14 807 807 HOH HOH . S 4 HOH C 15 816 816 HOH HOH . S 4 HOH C 16 876 876 HOH HOH . S 4 HOH C 17 936 936 HOH HOH . S 4 HOH C 18 1037 1037 HOH HOH . S 4 HOH C 19 1086 1086 HOH HOH . S 4 HOH C 20 1092 1092 HOH HOH . S 4 HOH C 21 1098 1098 HOH HOH . S 4 HOH C 22 1099 1099 HOH HOH . S 4 HOH C 23 1104 1104 HOH HOH . S 4 HOH C 24 1112 1112 HOH HOH . S 4 HOH C 25 1127 1127 HOH HOH . T 4 HOH D 1 556 556 HOH HOH . T 4 HOH D 2 559 559 HOH HOH . T 4 HOH D 3 566 566 HOH HOH . T 4 HOH D 4 580 580 HOH HOH . T 4 HOH D 5 583 583 HOH HOH . T 4 HOH D 6 599 599 HOH HOH . T 4 HOH D 7 607 607 HOH HOH . T 4 HOH D 8 608 608 HOH HOH . T 4 HOH D 9 609 609 HOH HOH . T 4 HOH D 10 628 628 HOH HOH . T 4 HOH D 11 630 630 HOH HOH . T 4 HOH D 12 633 633 HOH HOH . T 4 HOH D 13 635 635 HOH HOH . T 4 HOH D 14 637 637 HOH HOH . T 4 HOH D 15 638 638 HOH HOH . T 4 HOH D 16 654 654 HOH HOH . T 4 HOH D 17 655 655 HOH HOH . T 4 HOH D 18 656 656 HOH HOH . T 4 HOH D 19 657 657 HOH HOH . T 4 HOH D 20 658 658 HOH HOH . T 4 HOH D 21 659 659 HOH HOH . T 4 HOH D 22 664 664 HOH HOH . T 4 HOH D 23 678 678 HOH HOH . T 4 HOH D 24 806 806 HOH HOH . T 4 HOH D 25 829 829 HOH HOH . T 4 HOH D 26 861 861 HOH HOH . T 4 HOH D 27 865 865 HOH HOH . T 4 HOH D 28 875 875 HOH HOH . T 4 HOH D 29 933 933 HOH HOH . T 4 HOH D 30 957 957 HOH HOH . T 4 HOH D 31 963 963 HOH HOH . T 4 HOH D 32 967 967 HOH HOH . T 4 HOH D 33 1011 1011 HOH HOH . T 4 HOH D 34 1026 1026 HOH HOH . T 4 HOH D 35 1028 1028 HOH HOH . T 4 HOH D 36 1087 1087 HOH HOH . T 4 HOH D 37 1096 1096 HOH HOH . T 4 HOH D 38 1107 1107 HOH HOH . T 4 HOH D 39 1108 1108 HOH HOH . T 4 HOH D 40 1109 1109 HOH HOH . T 4 HOH D 41 1110 1110 HOH HOH . T 4 HOH D 42 1113 1113 HOH HOH . T 4 HOH D 43 1118 1118 HOH HOH . T 4 HOH D 44 1125 1125 HOH HOH . U 4 HOH E 1 560 560 HOH HOH . U 4 HOH E 2 576 576 HOH HOH . U 4 HOH E 3 578 578 HOH HOH . U 4 HOH E 4 588 588 HOH HOH . U 4 HOH E 5 611 611 HOH HOH . U 4 HOH E 6 617 617 HOH HOH . U 4 HOH E 7 632 632 HOH HOH . U 4 HOH E 8 644 644 HOH HOH . U 4 HOH E 9 660 660 HOH HOH . U 4 HOH E 10 680 680 HOH HOH . U 4 HOH E 11 843 843 HOH HOH . U 4 HOH E 12 846 846 HOH HOH . U 4 HOH E 13 847 847 HOH HOH . U 4 HOH E 14 850 850 HOH HOH . U 4 HOH E 15 944 944 HOH HOH . U 4 HOH E 16 945 945 HOH HOH . U 4 HOH E 17 946 946 HOH HOH . U 4 HOH E 18 1015 1015 HOH HOH . U 4 HOH E 19 1016 1016 HOH HOH . U 4 HOH E 20 1074 1074 HOH HOH . U 4 HOH E 21 1102 1102 HOH HOH . U 4 HOH E 22 1103 1103 HOH HOH . U 4 HOH E 23 1105 1105 HOH HOH . U 4 HOH E 24 1111 1111 HOH HOH . U 4 HOH E 25 1120 1120 HOH HOH . U 4 HOH E 26 1124 1124 HOH HOH . U 4 HOH E 27 1126 1126 HOH HOH . V 4 HOH F 1 557 557 HOH HOH . V 4 HOH F 2 573 573 HOH HOH . V 4 HOH F 3 603 603 HOH HOH . V 4 HOH F 4 605 605 HOH HOH . V 4 HOH F 5 613 613 HOH HOH . V 4 HOH F 6 618 618 HOH HOH . V 4 HOH F 7 620 620 HOH HOH . V 4 HOH F 8 626 626 HOH HOH . V 4 HOH F 9 627 627 HOH HOH . V 4 HOH F 10 640 640 HOH HOH . V 4 HOH F 11 662 662 HOH HOH . V 4 HOH F 12 801 801 HOH HOH . V 4 HOH F 13 826 826 HOH HOH . V 4 HOH F 14 855 855 HOH HOH . V 4 HOH F 15 867 867 HOH HOH . V 4 HOH F 16 882 882 HOH HOH . V 4 HOH F 17 887 887 HOH HOH . V 4 HOH F 18 922 922 HOH HOH . V 4 HOH F 19 1018 1018 HOH HOH . V 4 HOH F 20 1024 1024 HOH HOH . V 4 HOH F 21 1027 1027 HOH HOH . V 4 HOH F 22 1079 1079 HOH HOH . V 4 HOH F 23 1114 1114 HOH HOH . V 4 HOH F 24 1121 1121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 2 -26.521 -7.102 -10.735 1 28.3 ? C1 GOL 467 D 1 HETATM 2 O O1 GOL . . . L 2 -25.169 -7.095 -11.152 1 34.02 ? O1 GOL 467 D 1 HETATM 3 C C2 GOL . . . L 2 -26.77 -5.629 -10.51 1 72.76 ? C2 GOL 467 D 1 HETATM 4 O O2 GOL . . . L 2 -25.457 -5.085 -10.495 1 31.18 ? O2 GOL 467 D 1 HETATM 5 C C3 GOL . . . L 2 -27.557 -5.371 -9.215 1 23.29 ? C3 GOL 467 D 1 HETATM 6 O O3 GOL . . . L 2 -28.466 -6.425 -8.994 1 24.15 ? O3 GOL 467 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #