data_3KGQ # _model_server_result.job_id CXeB8u5sJyyAZTq1XmkbgA _model_server_result.datetime_utc '2024-10-19 01:36:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kgq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":314}' # _entry.id 3KGQ # _exptl.entry_id 3KGQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.04 _cell.angle_gamma 90 _cell.entry_id 3KGQ _cell.length_a 40.604 _cell.length_b 57.006 _cell.length_c 60.604 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KGQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 138 A CYS 138 1_555 A SG CYS 161 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc1 A ND1 HIS 69 A HIS 69 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc2 A OE2 GLU 72 A GLU 72 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc3 A OE1 GLU 72 A GLU 72 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc4 A ND1 HIS 196 A HIS 196 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc5 D O2 CIT . A CIT 310 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc6 D O1 CIT . A CIT 310 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 112 n n C O2 FMT sing 113 n n C H FMT sing 114 n n O2 HO2 FMT sing 115 n n # _atom_sites.entry_id 3KGQ _atom_sites.fract_transf_matrix[1][1] 0.024628 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005251 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016872 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 401 ZN ZN . C 3 NA A 1 402 402 NA NA . D 4 CIT A 1 310 1 CIT CIT . E 5 ACN A 1 311 1 ACN ACN . F 6 FMT A 1 312 1 FMT FMT . G 6 FMT A 1 313 2 FMT FMT . H 6 FMT A 1 314 3 FMT FMT . I 7 GOL A 1 315 1 GOL GOL . J 7 GOL A 1 316 2 GOL GOL . K 7 GOL A 1 317 3 GOL GOL . L 7 GOL A 1 318 4 GOL GOL . M 7 GOL A 1 319 5 GOL GOL . N 7 GOL A 1 320 6 GOL GOL . O 8 HOH A 1 321 1 HOH HOH . O 8 HOH A 2 322 2 HOH HOH . O 8 HOH A 3 323 3 HOH HOH . O 8 HOH A 4 324 4 HOH HOH . O 8 HOH A 5 325 5 HOH HOH . O 8 HOH A 6 326 6 HOH HOH . O 8 HOH A 7 327 7 HOH HOH . O 8 HOH A 8 328 8 HOH HOH . O 8 HOH A 9 329 9 HOH HOH . O 8 HOH A 10 330 10 HOH HOH . O 8 HOH A 11 331 11 HOH HOH . O 8 HOH A 12 332 12 HOH HOH . O 8 HOH A 13 333 13 HOH HOH . O 8 HOH A 14 334 14 HOH HOH . O 8 HOH A 15 335 15 HOH HOH . O 8 HOH A 16 336 16 HOH HOH . O 8 HOH A 17 337 17 HOH HOH . O 8 HOH A 18 338 18 HOH HOH . O 8 HOH A 19 339 19 HOH HOH . O 8 HOH A 20 340 20 HOH HOH . O 8 HOH A 21 341 21 HOH HOH . O 8 HOH A 22 342 22 HOH HOH . O 8 HOH A 23 343 23 HOH HOH . O 8 HOH A 24 344 24 HOH HOH . O 8 HOH A 25 345 25 HOH HOH . O 8 HOH A 26 346 26 HOH HOH . O 8 HOH A 27 347 27 HOH HOH . O 8 HOH A 28 348 28 HOH HOH . O 8 HOH A 29 349 29 HOH HOH . O 8 HOH A 30 350 30 HOH HOH . O 8 HOH A 31 351 31 HOH HOH . O 8 HOH A 32 352 32 HOH HOH . O 8 HOH A 33 353 33 HOH HOH . O 8 HOH A 34 354 34 HOH HOH . O 8 HOH A 35 355 35 HOH HOH . O 8 HOH A 36 356 36 HOH HOH . O 8 HOH A 37 357 37 HOH HOH . O 8 HOH A 38 358 38 HOH HOH . O 8 HOH A 39 359 39 HOH HOH . O 8 HOH A 40 360 40 HOH HOH . O 8 HOH A 41 361 41 HOH HOH . O 8 HOH A 42 362 42 HOH HOH . O 8 HOH A 43 363 43 HOH HOH . O 8 HOH A 44 364 44 HOH HOH . O 8 HOH A 45 365 45 HOH HOH . O 8 HOH A 46 366 46 HOH HOH . O 8 HOH A 47 367 47 HOH HOH . O 8 HOH A 48 368 48 HOH HOH . O 8 HOH A 49 369 49 HOH HOH . O 8 HOH A 50 370 50 HOH HOH . O 8 HOH A 51 371 51 HOH HOH . O 8 HOH A 52 372 52 HOH HOH . O 8 HOH A 53 373 53 HOH HOH . O 8 HOH A 54 374 54 HOH HOH . O 8 HOH A 55 375 55 HOH HOH . O 8 HOH A 56 376 56 HOH HOH . O 8 HOH A 57 377 57 HOH HOH . O 8 HOH A 58 378 58 HOH HOH . O 8 HOH A 59 379 59 HOH HOH . O 8 HOH A 60 380 60 HOH HOH . O 8 HOH A 61 381 61 HOH HOH . O 8 HOH A 62 382 62 HOH HOH . O 8 HOH A 63 383 63 HOH HOH . O 8 HOH A 64 384 64 HOH HOH . O 8 HOH A 65 385 65 HOH HOH . O 8 HOH A 66 386 66 HOH HOH . O 8 HOH A 67 387 67 HOH HOH . O 8 HOH A 68 388 68 HOH HOH . O 8 HOH A 69 389 69 HOH HOH . O 8 HOH A 70 390 70 HOH HOH . O 8 HOH A 71 391 71 HOH HOH . O 8 HOH A 72 392 72 HOH HOH . O 8 HOH A 73 393 73 HOH HOH . O 8 HOH A 74 394 74 HOH HOH . O 8 HOH A 75 395 75 HOH HOH . O 8 HOH A 76 396 76 HOH HOH . O 8 HOH A 77 397 77 HOH HOH . O 8 HOH A 78 398 78 HOH HOH . O 8 HOH A 79 399 79 HOH HOH . O 8 HOH A 80 400 80 HOH HOH . O 8 HOH A 81 403 81 HOH HOH . O 8 HOH A 82 404 82 HOH HOH . O 8 HOH A 83 405 83 HOH HOH . O 8 HOH A 84 406 84 HOH HOH . O 8 HOH A 85 407 85 HOH HOH . O 8 HOH A 86 408 86 HOH HOH . O 8 HOH A 87 409 87 HOH HOH . O 8 HOH A 88 410 88 HOH HOH . O 8 HOH A 89 411 89 HOH HOH . O 8 HOH A 90 412 90 HOH HOH . O 8 HOH A 91 413 91 HOH HOH . O 8 HOH A 92 414 92 HOH HOH . O 8 HOH A 93 415 93 HOH HOH . O 8 HOH A 94 416 94 HOH HOH . O 8 HOH A 95 417 95 HOH HOH . O 8 HOH A 96 418 96 HOH HOH . O 8 HOH A 97 419 97 HOH HOH . O 8 HOH A 98 420 98 HOH HOH . O 8 HOH A 99 421 99 HOH HOH . O 8 HOH A 100 422 100 HOH HOH . O 8 HOH A 101 423 101 HOH HOH . O 8 HOH A 102 424 102 HOH HOH . O 8 HOH A 103 425 103 HOH HOH . O 8 HOH A 104 426 104 HOH HOH . O 8 HOH A 105 427 105 HOH HOH . O 8 HOH A 106 428 106 HOH HOH . O 8 HOH A 107 429 107 HOH HOH . O 8 HOH A 108 430 108 HOH HOH . O 8 HOH A 109 431 109 HOH HOH . O 8 HOH A 110 432 110 HOH HOH . O 8 HOH A 111 433 111 HOH HOH . O 8 HOH A 112 434 112 HOH HOH . O 8 HOH A 113 435 113 HOH HOH . O 8 HOH A 114 436 114 HOH HOH . O 8 HOH A 115 437 115 HOH HOH . O 8 HOH A 116 438 116 HOH HOH . O 8 HOH A 117 439 117 HOH HOH . O 8 HOH A 118 440 118 HOH HOH . O 8 HOH A 119 441 119 HOH HOH . O 8 HOH A 120 442 120 HOH HOH . O 8 HOH A 121 443 121 HOH HOH . O 8 HOH A 122 444 122 HOH HOH . O 8 HOH A 123 445 123 HOH HOH . O 8 HOH A 124 446 124 HOH HOH . O 8 HOH A 125 447 125 HOH HOH . O 8 HOH A 126 448 126 HOH HOH . O 8 HOH A 127 449 127 HOH HOH . O 8 HOH A 128 450 128 HOH HOH . O 8 HOH A 129 451 129 HOH HOH . O 8 HOH A 130 452 130 HOH HOH . O 8 HOH A 131 453 131 HOH HOH . O 8 HOH A 132 454 132 HOH HOH . O 8 HOH A 133 455 133 HOH HOH . O 8 HOH A 134 456 134 HOH HOH . O 8 HOH A 135 457 135 HOH HOH . O 8 HOH A 136 458 136 HOH HOH . O 8 HOH A 137 459 137 HOH HOH . O 8 HOH A 138 460 138 HOH HOH . O 8 HOH A 139 461 139 HOH HOH . O 8 HOH A 140 462 140 HOH HOH . O 8 HOH A 141 463 141 HOH HOH . O 8 HOH A 142 464 142 HOH HOH . O 8 HOH A 143 465 143 HOH HOH . O 8 HOH A 144 466 144 HOH HOH . O 8 HOH A 145 467 145 HOH HOH . O 8 HOH A 146 468 146 HOH HOH . O 8 HOH A 147 469 147 HOH HOH . O 8 HOH A 148 470 148 HOH HOH . O 8 HOH A 149 471 149 HOH HOH . O 8 HOH A 150 472 150 HOH HOH . O 8 HOH A 151 473 151 HOH HOH . O 8 HOH A 152 474 152 HOH HOH . O 8 HOH A 153 475 153 HOH HOH . O 8 HOH A 154 476 154 HOH HOH . O 8 HOH A 155 477 155 HOH HOH . O 8 HOH A 156 478 156 HOH HOH . O 8 HOH A 157 479 157 HOH HOH . O 8 HOH A 158 480 158 HOH HOH . O 8 HOH A 159 481 159 HOH HOH . O 8 HOH A 160 482 160 HOH HOH . O 8 HOH A 161 483 161 HOH HOH . O 8 HOH A 162 484 162 HOH HOH . O 8 HOH A 163 485 163 HOH HOH . O 8 HOH A 164 486 164 HOH HOH . O 8 HOH A 165 487 165 HOH HOH . O 8 HOH A 166 488 166 HOH HOH . O 8 HOH A 167 489 167 HOH HOH . O 8 HOH A 168 490 168 HOH HOH . O 8 HOH A 169 491 169 HOH HOH . O 8 HOH A 170 492 170 HOH HOH . O 8 HOH A 171 493 171 HOH HOH . O 8 HOH A 172 494 172 HOH HOH . O 8 HOH A 173 495 173 HOH HOH . O 8 HOH A 174 496 174 HOH HOH . O 8 HOH A 175 497 175 HOH HOH . O 8 HOH A 176 498 176 HOH HOH . O 8 HOH A 177 499 177 HOH HOH . O 8 HOH A 178 500 178 HOH HOH . O 8 HOH A 179 501 179 HOH HOH . O 8 HOH A 180 502 180 HOH HOH . O 8 HOH A 181 503 181 HOH HOH . O 8 HOH A 182 504 182 HOH HOH . O 8 HOH A 183 505 183 HOH HOH . O 8 HOH A 184 506 184 HOH HOH . O 8 HOH A 185 507 185 HOH HOH . O 8 HOH A 186 508 186 HOH HOH . O 8 HOH A 187 509 187 HOH HOH . O 8 HOH A 188 510 188 HOH HOH . O 8 HOH A 189 511 189 HOH HOH . O 8 HOH A 190 512 190 HOH HOH . O 8 HOH A 191 513 191 HOH HOH . O 8 HOH A 192 514 192 HOH HOH . O 8 HOH A 193 515 193 HOH HOH . O 8 HOH A 194 516 194 HOH HOH . O 8 HOH A 195 517 195 HOH HOH . O 8 HOH A 196 518 196 HOH HOH . O 8 HOH A 197 519 197 HOH HOH . O 8 HOH A 198 520 198 HOH HOH . O 8 HOH A 199 521 199 HOH HOH . O 8 HOH A 200 522 200 HOH HOH . O 8 HOH A 201 523 201 HOH HOH . O 8 HOH A 202 524 202 HOH HOH . O 8 HOH A 203 525 203 HOH HOH . O 8 HOH A 204 526 204 HOH HOH . O 8 HOH A 205 527 205 HOH HOH . O 8 HOH A 206 528 206 HOH HOH . O 8 HOH A 207 529 207 HOH HOH . O 8 HOH A 208 530 208 HOH HOH . O 8 HOH A 209 531 209 HOH HOH . O 8 HOH A 210 532 210 HOH HOH . O 8 HOH A 211 533 211 HOH HOH . O 8 HOH A 212 534 212 HOH HOH . O 8 HOH A 213 535 213 HOH HOH . O 8 HOH A 214 536 214 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . H 6 25.529 0.005 7.62 1 36.86 ? C FMT 314 A 1 HETATM 2 O O1 FMT . . . H 6 26.063 1.118 7.625 1 36.74 ? O1 FMT 314 A 1 HETATM 3 O O2 FMT . . . H 6 26.09 -1.027 7.242 1 36.79 ? O2 FMT 314 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 3 #