data_3KGT # _model_server_result.job_id 03S2HYkAETN0VUyR3UDQTg _model_server_result.datetime_utc '2024-11-26 22:23:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kgt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3071}' # _entry.id 3KGT # _exptl.entry_id 3KGT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.237 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GENISTEIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KGT _cell.length_a 43.27 _cell.length_b 85.07 _cell.length_c 64.18 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KGT _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 43.27 85.07 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C15 H10 O5' _chem_comp.formula_weight 270.237 _chem_comp.id GEN _chem_comp.mon_nstd_flag . _chem_comp.name GENISTEIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "5,7-DIHYDROXY-3-(4-HYDROXYPHENYL)-4H-1-BENZOPYRAN-4-ONE;4',5,7-TRIHYDROXYISOFLAVONE;PRUNETOL;GENISTEOL" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GEN doub 83 n y C1 C10 GEN sing 84 n y C1 H1 GEN sing 85 n n C2 O2 GEN sing 86 n n C2 C3 GEN sing 87 n y O2 H2 GEN sing 88 n n C3 C4 GEN doub 89 n y C3 H3 GEN sing 90 n n C4 O4 GEN sing 91 n n C4 C5 GEN sing 92 n y O4 H4 GEN sing 93 n n C5 C6 GEN sing 94 n y C5 C10 GEN doub 95 n y C6 O6 GEN doub 96 n n C6 C7 GEN sing 97 n y C7 C8 GEN doub 98 n y C7 C11 GEN sing 99 n y C8 O9 GEN sing 100 n y C8 H8 GEN sing 101 n n O9 C10 GEN sing 102 n y C11 C12 GEN doub 103 n y C11 C16 GEN sing 104 n y C12 C13 GEN sing 105 n y C12 H12 GEN sing 106 n n C13 C14 GEN doub 107 n y C13 H13 GEN sing 108 n n C14 O14 GEN sing 109 n n C14 C15 GEN sing 110 n y O14 H14 GEN sing 111 n n C15 C16 GEN doub 112 n y C15 H15 GEN sing 113 n n C16 H16 GEN sing 114 n n # _atom_sites.entry_id 3KGT _atom_sites.fract_transf_matrix[1][1] 0.023111 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011755 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015581 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GEN A 1 3071 3071 GEN GEN . D 2 GEN B 1 3071 3071 GEN GEN . E 3 HOH A 1 128 128 HOH HOH . E 3 HOH A 2 129 129 HOH HOH . E 3 HOH A 3 130 1 HOH HOH . E 3 HOH A 4 131 131 HOH HOH . E 3 HOH A 5 132 132 HOH HOH . E 3 HOH A 6 133 2 HOH HOH . E 3 HOH A 7 134 134 HOH HOH . E 3 HOH A 8 135 135 HOH HOH . E 3 HOH A 9 136 136 HOH HOH . E 3 HOH A 10 137 137 HOH HOH . E 3 HOH A 11 138 138 HOH HOH . E 3 HOH A 12 139 4 HOH HOH . E 3 HOH A 13 140 140 HOH HOH . E 3 HOH A 14 141 5 HOH HOH . E 3 HOH A 15 142 142 HOH HOH . E 3 HOH A 16 143 143 HOH HOH . E 3 HOH A 17 144 144 HOH HOH . E 3 HOH A 18 145 6 HOH HOH . E 3 HOH A 19 146 9 HOH HOH . E 3 HOH A 20 147 147 HOH HOH . E 3 HOH A 21 148 148 HOH HOH . E 3 HOH A 22 149 149 HOH HOH . E 3 HOH A 23 150 150 HOH HOH . E 3 HOH A 24 151 12 HOH HOH . E 3 HOH A 25 152 15 HOH HOH . E 3 HOH A 26 153 18 HOH HOH . E 3 HOH A 27 154 19 HOH HOH . E 3 HOH A 28 155 20 HOH HOH . E 3 HOH A 29 156 21 HOH HOH . E 3 HOH A 30 157 23 HOH HOH . E 3 HOH A 31 158 24 HOH HOH . E 3 HOH A 32 159 26 HOH HOH . E 3 HOH A 33 160 27 HOH HOH . E 3 HOH A 34 161 29 HOH HOH . E 3 HOH A 35 162 31 HOH HOH . E 3 HOH A 36 163 34 HOH HOH . E 3 HOH A 37 164 35 HOH HOH . E 3 HOH A 38 165 36 HOH HOH . E 3 HOH A 39 166 39 HOH HOH . E 3 HOH A 40 167 40 HOH HOH . E 3 HOH A 41 168 41 HOH HOH . E 3 HOH A 42 169 42 HOH HOH . E 3 HOH A 43 170 43 HOH HOH . E 3 HOH A 44 171 44 HOH HOH . E 3 HOH A 45 172 45 HOH HOH . E 3 HOH A 46 173 47 HOH HOH . E 3 HOH A 47 174 50 HOH HOH . E 3 HOH A 48 175 51 HOH HOH . E 3 HOH A 49 176 52 HOH HOH . E 3 HOH A 50 177 56 HOH HOH . E 3 HOH A 51 178 57 HOH HOH . E 3 HOH A 52 179 62 HOH HOH . E 3 HOH A 53 180 63 HOH HOH . E 3 HOH A 54 181 64 HOH HOH . E 3 HOH A 55 182 65 HOH HOH . E 3 HOH A 56 183 67 HOH HOH . E 3 HOH A 57 184 68 HOH HOH . E 3 HOH A 58 185 71 HOH HOH . E 3 HOH A 59 186 73 HOH HOH . E 3 HOH A 60 187 75 HOH HOH . E 3 HOH A 61 188 76 HOH HOH . E 3 HOH A 62 189 77 HOH HOH . E 3 HOH A 63 190 78 HOH HOH . E 3 HOH A 64 191 81 HOH HOH . E 3 HOH A 65 192 84 HOH HOH . E 3 HOH A 66 193 85 HOH HOH . E 3 HOH A 67 194 86 HOH HOH . E 3 HOH A 68 195 88 HOH HOH . E 3 HOH A 69 196 89 HOH HOH . E 3 HOH A 70 197 90 HOH HOH . E 3 HOH A 71 198 93 HOH HOH . E 3 HOH A 72 199 94 HOH HOH . E 3 HOH A 73 200 95 HOH HOH . E 3 HOH A 74 201 96 HOH HOH . E 3 HOH A 75 202 97 HOH HOH . E 3 HOH A 76 203 98 HOH HOH . E 3 HOH A 77 204 102 HOH HOH . E 3 HOH A 78 205 103 HOH HOH . E 3 HOH A 79 206 104 HOH HOH . E 3 HOH A 80 207 106 HOH HOH . E 3 HOH A 81 208 107 HOH HOH . E 3 HOH A 82 209 111 HOH HOH . E 3 HOH A 83 210 113 HOH HOH . E 3 HOH A 84 211 116 HOH HOH . E 3 HOH A 85 212 117 HOH HOH . E 3 HOH A 86 213 120 HOH HOH . E 3 HOH A 87 214 121 HOH HOH . E 3 HOH A 88 215 123 HOH HOH . E 3 HOH A 89 216 124 HOH HOH . E 3 HOH A 90 217 125 HOH HOH . E 3 HOH A 91 218 126 HOH HOH . E 3 HOH A 92 219 127 HOH HOH . F 3 HOH B 1 128 3 HOH HOH . F 3 HOH B 2 129 7 HOH HOH . F 3 HOH B 3 130 130 HOH HOH . F 3 HOH B 4 131 8 HOH HOH . F 3 HOH B 5 132 10 HOH HOH . F 3 HOH B 6 133 133 HOH HOH . F 3 HOH B 7 134 11 HOH HOH . F 3 HOH B 8 135 13 HOH HOH . F 3 HOH B 9 136 14 HOH HOH . F 3 HOH B 10 137 16 HOH HOH . F 3 HOH B 11 138 17 HOH HOH . F 3 HOH B 12 139 139 HOH HOH . F 3 HOH B 13 140 22 HOH HOH . F 3 HOH B 14 141 141 HOH HOH . F 3 HOH B 15 142 25 HOH HOH . F 3 HOH B 16 143 28 HOH HOH . F 3 HOH B 17 144 30 HOH HOH . F 3 HOH B 18 145 145 HOH HOH . F 3 HOH B 19 146 146 HOH HOH . F 3 HOH B 20 147 32 HOH HOH . F 3 HOH B 21 148 33 HOH HOH . F 3 HOH B 22 149 37 HOH HOH . F 3 HOH B 23 150 38 HOH HOH . F 3 HOH B 24 151 151 HOH HOH . F 3 HOH B 25 152 152 HOH HOH . F 3 HOH B 26 153 153 HOH HOH . F 3 HOH B 27 154 154 HOH HOH . F 3 HOH B 28 155 155 HOH HOH . F 3 HOH B 29 156 156 HOH HOH . F 3 HOH B 30 157 46 HOH HOH . F 3 HOH B 31 158 48 HOH HOH . F 3 HOH B 32 159 49 HOH HOH . F 3 HOH B 33 160 53 HOH HOH . F 3 HOH B 34 161 54 HOH HOH . F 3 HOH B 35 162 55 HOH HOH . F 3 HOH B 36 163 58 HOH HOH . F 3 HOH B 37 164 59 HOH HOH . F 3 HOH B 38 165 60 HOH HOH . F 3 HOH B 39 166 61 HOH HOH . F 3 HOH B 40 167 66 HOH HOH . F 3 HOH B 41 168 69 HOH HOH . F 3 HOH B 42 169 70 HOH HOH . F 3 HOH B 43 170 72 HOH HOH . F 3 HOH B 44 171 74 HOH HOH . F 3 HOH B 45 172 79 HOH HOH . F 3 HOH B 46 173 80 HOH HOH . F 3 HOH B 47 174 82 HOH HOH . F 3 HOH B 48 175 83 HOH HOH . F 3 HOH B 49 176 87 HOH HOH . F 3 HOH B 50 177 91 HOH HOH . F 3 HOH B 51 178 92 HOH HOH . F 3 HOH B 52 179 99 HOH HOH . F 3 HOH B 53 180 100 HOH HOH . F 3 HOH B 54 181 101 HOH HOH . F 3 HOH B 55 182 105 HOH HOH . F 3 HOH B 56 183 108 HOH HOH . F 3 HOH B 57 184 109 HOH HOH . F 3 HOH B 58 185 110 HOH HOH . F 3 HOH B 59 186 112 HOH HOH . F 3 HOH B 60 187 114 HOH HOH . F 3 HOH B 61 188 115 HOH HOH . F 3 HOH B 62 189 118 HOH HOH . F 3 HOH B 63 190 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GEN . . . D 2 20.761 43.114 61.476 0.45 36.1 ? C1 GEN 3071 B 1 HETATM 2 C C2 GEN . . . D 2 21.62 42.494 62.37 0.45 36.31 ? C2 GEN 3071 B 1 HETATM 3 O O2 GEN . . . D 2 21.407 42.632 63.705 0.45 36.36 ? O2 GEN 3071 B 1 HETATM 4 C C3 GEN . . . D 2 22.683 41.732 61.897 0.45 36.1 ? C3 GEN 3071 B 1 HETATM 5 C C4 GEN . . . D 2 22.888 41.599 60.527 0.45 35.78 ? C4 GEN 3071 B 1 HETATM 6 O O4 GEN . . . D 2 23.93 40.852 60.075 0.45 35.33 ? O4 GEN 3071 B 1 HETATM 7 C C5 GEN . . . D 2 22.026 42.227 59.632 0.45 35.88 ? C5 GEN 3071 B 1 HETATM 8 C C6 GEN . . . D 2 22.213 42.098 58.263 0.45 35.91 ? C6 GEN 3071 B 1 HETATM 9 O O6 GEN . . . D 2 23.141 41.434 57.799 0.45 35.75 ? O6 GEN 3071 B 1 HETATM 10 C C7 GEN . . . D 2 21.308 42.723 57.422 0.45 36.12 ? C7 GEN 3071 B 1 HETATM 11 C C8 GEN . . . D 2 20.259 43.463 57.948 0.45 36.02 ? C8 GEN 3071 B 1 HETATM 12 O O9 GEN . . . D 2 20.074 43.624 59.288 0.45 35.91 ? O9 GEN 3071 B 1 HETATM 13 C C10 GEN . . . D 2 20.956 42.986 60.109 0.45 35.96 ? C10 GEN 3071 B 1 HETATM 14 C C11 GEN . . . D 2 21.43 42.627 56.046 0.45 36.33 ? C11 GEN 3071 B 1 HETATM 15 C C12 GEN . . . D 2 21.218 41.416 55.405 0.45 36.45 ? C12 GEN 3071 B 1 HETATM 16 C C13 GEN . . . D 2 21.34 41.346 54.025 0.45 37.14 ? C13 GEN 3071 B 1 HETATM 17 C C14 GEN . . . D 2 21.663 42.47 53.284 0.45 36.74 ? C14 GEN 3071 B 1 HETATM 18 O O14 GEN . . . D 2 21.779 42.388 51.93 0.45 38.03 ? O14 GEN 3071 B 1 HETATM 19 C C15 GEN . . . D 2 21.868 43.675 53.933 0.45 37.09 ? C15 GEN 3071 B 1 HETATM 20 C C16 GEN . . . D 2 21.752 43.758 55.313 0.45 36.5 ? C16 GEN 3071 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 689 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #