data_3KH4 # _model_server_result.job_id zCjr9rUuYt9vbZPw5wQfpA _model_server_result.datetime_utc '2024-11-04 20:11:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kh4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":154}' # _entry.id 3KH4 # _exptl.entry_id 3KH4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KH4 _cell.length_a 112.188 _cell.length_b 112.188 _cell.length_c 428.268 _cell.Z_PDB 72 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KH4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J 1 1 C,D,K,L,M,N 2 1 E,F,O,P,Q,R 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 57 A CYS 57 1_555 A SG CYS 146 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf2 B SG CYS 57 B CYS 57 1_555 B SG CYS 146 B CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf3 C SG CYS 57 C CYS 57 1_555 C SG CYS 146 C CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf4 D SG CYS 57 D CYS 57 1_555 D SG CYS 146 D CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? disulf ? disulf5 E SG CYS 57 E CYS 57 1_555 E SG CYS 146 E CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? disulf ? disulf6 F SG CYS 57 F CYS 57 1_555 F SG CYS 146 F CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc1 A ND1 HIS 46 A HIS 46 1_555 G CU CU . A CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc2 A ND1 HIS 63 A HIS 63 1_555 H ZN ZN . A ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc3 A ND1 HIS 71 A HIS 71 1_555 H ZN ZN . A ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc4 A ND1 HIS 80 A HIS 80 1_555 H ZN ZN . A ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc5 A OD1 ASP 83 A ASP 83 1_555 H ZN ZN . A ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? metalc ? metalc6 A NE2 HIS 120 A HIS 120 1_555 G CU CU . A CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc7 B ND1 HIS 63 B HIS 63 1_555 J ZN ZN . B ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc8 B ND1 HIS 71 B HIS 71 1_555 J ZN ZN . B ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc9 B ND1 HIS 80 B HIS 80 1_555 J ZN ZN . B ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc10 B OD1 ASP 83 B ASP 83 1_555 J ZN ZN . B ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? metalc ? metalc11 B NE2 HIS 120 B HIS 120 1_555 I CU CU . B CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc12 C ND1 HIS 46 C HIS 46 1_555 K CU CU . C CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc13 C NE2 HIS 48 C HIS 48 1_555 K CU CU . C CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc14 C ND1 HIS 63 C HIS 63 1_555 L ZN ZN . C ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc15 C ND1 HIS 71 C HIS 71 1_555 L ZN ZN . C ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc16 C ND1 HIS 80 C HIS 80 1_555 L ZN ZN . C ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc17 C OD1 ASP 83 C ASP 83 1_555 L ZN ZN . C ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? metalc ? metalc18 C NE2 HIS 120 C HIS 120 1_555 K CU CU . C CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc19 D ND1 HIS 46 D HIS 46 1_555 M CU CU . D CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc20 D ND1 HIS 63 D HIS 63 1_555 N ZN ZN . D ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc21 D ND1 HIS 71 D HIS 71 1_555 N ZN ZN . D ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc22 D ND1 HIS 80 D HIS 80 1_555 N ZN ZN . D ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc23 D OD1 ASP 83 D ASP 83 1_555 N ZN ZN . D ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? metalc ? metalc24 D NE2 HIS 120 D HIS 120 1_555 M CU CU . D CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc25 E NE2 HIS 48 E HIS 48 1_555 O CU CU . E CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc26 E ND1 HIS 63 E HIS 63 1_555 P ZN ZN . E ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc27 E ND1 HIS 71 E HIS 71 1_555 P ZN ZN . E ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc28 E ND1 HIS 80 E HIS 80 1_555 P ZN ZN . E ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc29 E OD1 ASP 83 E ASP 83 1_555 P ZN ZN . E ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? metalc ? metalc30 E NE2 HIS 120 E HIS 120 1_555 O CU CU . E CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc31 F ND1 HIS 46 F HIS 46 1_555 Q CU CU . F CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc32 F ND1 HIS 63 F HIS 63 1_555 R ZN ZN . F ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc33 F ND1 HIS 71 F HIS 71 1_555 R ZN ZN . F ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc34 F ND1 HIS 80 F HIS 80 1_555 R ZN ZN . F ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc35 F OD1 ASP 83 F ASP 83 1_555 R ZN ZN . F ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? metalc ? metalc36 F NE2 HIS 120 F HIS 120 1_555 Q CU CU . F CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc37 E ND1 HIS 46 E HIS 46 1_555 O CU CU . E CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc38 A NE2 HIS 48 A HIS 48 1_555 G CU CU . A CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc39 B NE2 HIS 48 B HIS 48 1_555 I CU CU . B CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc40 F NE2 HIS 48 F HIS 48 1_555 Q CU CU . F CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc41 D NE2 HIS 48 D HIS 48 1_555 M CU CU . D CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc42 B ND1 HIS 46 B HIS 46 1_555 I CU CU . B CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc43 C NE2 HIS 63 C HIS 63 1_555 K CU CU . C CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc44 D NE2 HIS 63 D HIS 63 1_555 M CU CU . D CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc45 E NE2 HIS 63 E HIS 63 1_555 O CU CU . E CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc46 B NE2 HIS 63 B HIS 63 1_555 I CU CU . B CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3KH4 _atom_sites.fract_transf_matrix[1][1] 0.008914 _atom_sites.fract_transf_matrix[1][2] 0.005146 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 CU A 1 154 154 CU CU . H 3 ZN A 1 155 155 ZN ZN . I 2 CU B 1 154 154 CU CU . J 3 ZN B 1 155 155 ZN ZN . K 2 CU C 1 154 154 CU CU . L 3 ZN C 1 155 155 ZN ZN . M 2 CU D 1 154 154 CU CU . N 3 ZN D 1 155 155 ZN ZN . O 2 CU E 1 154 154 CU CU . P 3 ZN E 1 155 155 ZN ZN . Q 2 CU F 1 154 154 CU CU . R 3 ZN F 1 155 155 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 2 _atom_site.Cartn_x -24.192 _atom_site.Cartn_y -67.654 _atom_site.Cartn_z 19.2 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 138.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 154 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #