data_3KHJ
#
_model_server_result.job_id            1y1NqigKd_FJF9yFo549dQ 
_model_server_result.datetime_utc      '2024-11-15 02:33:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3khj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":801}' 
#
_entry.id    3KHJ 
#
_exptl.entry_id    3KHJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              348.206 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'INOSINIC ACID' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.14 
_cell.angle_gamma         90 
_cell.entry_id            3KHJ 
_cell.length_a            83.481 
_cell.length_b            166.141 
_cell.length_c            101.289 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KHJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,N,O,U,V,W,X 1 1 
E,F,G,H,P,Q,R,S,T,Y,Z,AA,BA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 L N N 
? 2 M N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
#
_chem_comp.formula           'C10 H13 N4 O8 P' 
_chem_comp.formula_weight    348.206 
_chem_comp.id                IMP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'INOSINIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P IMP doub 220 n n 
P O2P IMP sing 221 n n 
P O3P IMP sing 222 n n 
P O5' IMP sing 223 n n 
O2P HOP2 IMP sing 224 n n 
O3P HOP3 IMP sing 225 n n 
O5' C5' IMP sing 226 n n 
C5' C4' IMP sing 227 n n 
C5' "H5'1" IMP sing 228 n n 
C5' "H5'2" IMP sing 229 n n 
C4' O4' IMP sing 230 n n 
C4' C3' IMP sing 231 n n 
C4' H4' IMP sing 232 n n 
O4' C1' IMP sing 233 n n 
C3' O3' IMP sing 234 n n 
C3' C2' IMP sing 235 n n 
C3' H3' IMP sing 236 n n 
O3' HO3' IMP sing 237 n n 
C2' O2' IMP sing 238 n n 
C2' C1' IMP sing 239 n n 
C2' H2' IMP sing 240 n n 
O2' HO2' IMP sing 241 n n 
C1' N9 IMP sing 242 n n 
C1' H1' IMP sing 243 n n 
N9 C8 IMP sing 244 n y 
N9 C4 IMP sing 245 n y 
C8 N7 IMP doub 246 n y 
C8 H8 IMP sing 247 n n 
N7 C5 IMP sing 248 n y 
C5 C6 IMP sing 249 n n 
C5 C4 IMP doub 250 n y 
C6 O6 IMP doub 251 n n 
C6 N1 IMP sing 252 n n 
N1 C2 IMP sing 253 n n 
N1 HN1 IMP sing 254 n n 
C2 N3 IMP doub 255 n n 
C2 H2 IMP sing 256 n n 
N3 C4 IMP sing 257 n n 
#
_atom_sites.entry_id                     3KHJ 
_atom_sites.fract_transf_matrix[1][1]    0.011979 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003242 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006019 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010228 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 IMP A 1 801 801 IMP IMP . 
J 2 IMP B 1 804 804 IMP IMP . 
K 3 C64 B 1 901 901 C64 C64 . 
L 2 IMP C 1 803 803 IMP IMP . 
M 2 IMP D 1 802 802 IMP IMP . 
N 4 ACT D 1 401 33 ACT ACT . 
O 3 C64 D 1 902 902 C64 C64 . 
P 2 IMP E 1 805 805 IMP IMP . 
Q 2 IMP F 1 808 808 IMP IMP . 
R 2 IMP G 1 807 807 IMP IMP . 
S 2 IMP H 1 806 806 IMP IMP . 
T 3 C64 H 1 903 903 C64 C64 . 
U 5 HOH A 1 95 95 HOH HOH . 
U 5 HOH A 2 97 97 HOH HOH . 
U 5 HOH A 3 128 128 HOH HOH . 
U 5 HOH A 4 401 3 HOH HOH . 
U 5 HOH A 5 402 4 HOH HOH . 
U 5 HOH A 6 403 12 HOH HOH . 
U 5 HOH A 7 404 16 HOH HOH . 
U 5 HOH A 8 405 20 HOH HOH . 
U 5 HOH A 9 406 28 HOH HOH . 
U 5 HOH A 10 407 32 HOH HOH . 
U 5 HOH A 11 408 45 HOH HOH . 
U 5 HOH A 12 409 50 HOH HOH . 
U 5 HOH A 13 410 57 HOH HOH . 
U 5 HOH A 14 411 70 HOH HOH . 
U 5 HOH A 15 412 77 HOH HOH . 
U 5 HOH A 16 413 135 HOH HOH . 
U 5 HOH A 17 414 142 HOH HOH . 
U 5 HOH A 18 415 150 HOH HOH . 
U 5 HOH A 19 416 179 HOH HOH . 
U 5 HOH A 20 417 181 HOH HOH . 
U 5 HOH A 21 418 184 HOH HOH . 
U 5 HOH A 22 419 195 HOH HOH . 
U 5 HOH A 23 420 204 HOH HOH . 
U 5 HOH A 24 421 205 HOH HOH . 
U 5 HOH A 25 423 211 HOH HOH . 
U 5 HOH A 26 424 219 HOH HOH . 
U 5 HOH A 27 425 220 HOH HOH . 
U 5 HOH A 28 426 225 HOH HOH . 
U 5 HOH A 29 427 228 HOH HOH . 
U 5 HOH A 30 428 252 HOH HOH . 
U 5 HOH A 31 429 256 HOH HOH . 
U 5 HOH A 32 430 257 HOH HOH . 
U 5 HOH A 33 431 261 HOH HOH . 
U 5 HOH A 34 432 263 HOH HOH . 
U 5 HOH A 35 433 268 HOH HOH . 
U 5 HOH A 36 434 272 HOH HOH . 
U 5 HOH A 37 435 280 HOH HOH . 
V 5 HOH B 1 98 98 HOH HOH . 
V 5 HOH B 2 108 108 HOH HOH . 
V 5 HOH B 3 113 113 HOH HOH . 
V 5 HOH B 4 115 115 HOH HOH . 
V 5 HOH B 5 125 125 HOH HOH . 
V 5 HOH B 6 126 126 HOH HOH . 
V 5 HOH B 7 129 129 HOH HOH . 
V 5 HOH B 8 132 132 HOH HOH . 
V 5 HOH B 9 401 22 HOH HOH . 
V 5 HOH B 10 402 25 HOH HOH . 
V 5 HOH B 11 403 27 HOH HOH . 
V 5 HOH B 12 404 34 HOH HOH . 
V 5 HOH B 13 405 38 HOH HOH . 
V 5 HOH B 14 406 42 HOH HOH . 
V 5 HOH B 15 407 43 HOH HOH . 
V 5 HOH B 16 408 46 HOH HOH . 
V 5 HOH B 17 409 52 HOH HOH . 
V 5 HOH B 18 410 53 HOH HOH . 
V 5 HOH B 19 411 54 HOH HOH . 
V 5 HOH B 20 412 63 HOH HOH . 
V 5 HOH B 21 413 68 HOH HOH . 
V 5 HOH B 22 414 72 HOH HOH . 
V 5 HOH B 23 415 79 HOH HOH . 
V 5 HOH B 24 416 81 HOH HOH . 
V 5 HOH B 25 417 86 HOH HOH . 
V 5 HOH B 26 418 151 HOH HOH . 
V 5 HOH B 27 419 196 HOH HOH . 
V 5 HOH B 28 420 208 HOH HOH . 
V 5 HOH B 29 421 217 HOH HOH . 
V 5 HOH B 30 422 207 HOH HOH . 
V 5 HOH B 31 423 238 HOH HOH . 
V 5 HOH B 32 424 242 HOH HOH . 
V 5 HOH B 33 425 245 HOH HOH . 
V 5 HOH B 34 426 251 HOH HOH . 
V 5 HOH B 35 427 264 HOH HOH . 
V 5 HOH B 36 428 277 HOH HOH . 
V 5 HOH B 37 429 234 HOH HOH . 
V 5 HOH B 38 430 269 HOH HOH . 
W 5 HOH C 1 96 96 HOH HOH . 
W 5 HOH C 2 103 103 HOH HOH . 
W 5 HOH C 3 116 116 HOH HOH . 
W 5 HOH C 4 120 120 HOH HOH . 
W 5 HOH C 5 123 123 HOH HOH . 
W 5 HOH C 6 133 133 HOH HOH . 
W 5 HOH C 7 401 2 HOH HOH . 
W 5 HOH C 8 402 5 HOH HOH . 
W 5 HOH C 9 403 7 HOH HOH . 
W 5 HOH C 10 404 10 HOH HOH . 
W 5 HOH C 11 405 17 HOH HOH . 
W 5 HOH C 12 406 39 HOH HOH . 
W 5 HOH C 13 407 40 HOH HOH . 
W 5 HOH C 14 408 41 HOH HOH . 
W 5 HOH C 15 409 61 HOH HOH . 
W 5 HOH C 16 410 67 HOH HOH . 
W 5 HOH C 17 411 71 HOH HOH . 
W 5 HOH C 18 412 88 HOH HOH . 
W 5 HOH C 19 413 137 HOH HOH . 
W 5 HOH C 20 414 146 HOH HOH . 
W 5 HOH C 21 415 148 HOH HOH . 
W 5 HOH C 22 416 193 HOH HOH . 
W 5 HOH C 23 417 197 HOH HOH . 
W 5 HOH C 24 418 199 HOH HOH . 
W 5 HOH C 25 419 200 HOH HOH . 
W 5 HOH C 26 420 203 HOH HOH . 
W 5 HOH C 27 421 206 HOH HOH . 
W 5 HOH C 28 422 223 HOH HOH . 
W 5 HOH C 29 423 233 HOH HOH . 
W 5 HOH C 30 424 236 HOH HOH . 
W 5 HOH C 31 425 237 HOH HOH . 
W 5 HOH C 32 426 239 HOH HOH . 
W 5 HOH C 33 427 248 HOH HOH . 
W 5 HOH C 34 428 249 HOH HOH . 
W 5 HOH C 35 429 250 HOH HOH . 
W 5 HOH C 36 430 254 HOH HOH . 
W 5 HOH C 37 431 255 HOH HOH . 
W 5 HOH C 38 432 258 HOH HOH . 
W 5 HOH C 39 433 273 HOH HOH . 
W 5 HOH C 40 434 274 HOH HOH . 
W 5 HOH C 41 435 275 HOH HOH . 
X 5 HOH D 1 94 94 HOH HOH . 
X 5 HOH D 2 99 99 HOH HOH . 
X 5 HOH D 3 109 109 HOH HOH . 
X 5 HOH D 4 112 112 HOH HOH . 
X 5 HOH D 5 117 117 HOH HOH . 
X 5 HOH D 6 118 118 HOH HOH . 
X 5 HOH D 7 131 131 HOH HOH . 
X 5 HOH D 8 402 1 HOH HOH . 
X 5 HOH D 9 403 24 HOH HOH . 
X 5 HOH D 10 404 30 HOH HOH . 
X 5 HOH D 11 405 35 HOH HOH . 
X 5 HOH D 12 406 49 HOH HOH . 
X 5 HOH D 13 407 51 HOH HOH . 
X 5 HOH D 14 408 64 HOH HOH . 
X 5 HOH D 15 409 66 HOH HOH . 
X 5 HOH D 16 410 73 HOH HOH . 
X 5 HOH D 17 411 83 HOH HOH . 
X 5 HOH D 18 412 91 HOH HOH . 
X 5 HOH D 19 413 92 HOH HOH . 
X 5 HOH D 20 414 140 HOH HOH . 
X 5 HOH D 21 415 143 HOH HOH . 
X 5 HOH D 22 416 159 HOH HOH . 
X 5 HOH D 23 417 172 HOH HOH . 
X 5 HOH D 24 418 173 HOH HOH . 
X 5 HOH D 25 419 182 HOH HOH . 
X 5 HOH D 26 420 185 HOH HOH . 
X 5 HOH D 27 421 186 HOH HOH . 
X 5 HOH D 28 422 188 HOH HOH . 
X 5 HOH D 29 423 190 HOH HOH . 
X 5 HOH D 30 424 191 HOH HOH . 
X 5 HOH D 31 425 201 HOH HOH . 
X 5 HOH D 32 426 214 HOH HOH . 
X 5 HOH D 33 427 224 HOH HOH . 
X 5 HOH D 34 428 226 HOH HOH . 
X 5 HOH D 35 429 232 HOH HOH . 
X 5 HOH D 36 430 235 HOH HOH . 
X 5 HOH D 37 431 243 HOH HOH . 
X 5 HOH D 38 432 247 HOH HOH . 
X 5 HOH D 39 433 260 HOH HOH . 
X 5 HOH D 40 434 267 HOH HOH . 
Y 5 HOH E 1 100 100 HOH HOH . 
Y 5 HOH E 2 119 119 HOH HOH . 
Y 5 HOH E 3 401 14 HOH HOH . 
Y 5 HOH E 4 402 75 HOH HOH . 
Y 5 HOH E 5 403 90 HOH HOH . 
Y 5 HOH E 6 404 136 HOH HOH . 
Y 5 HOH E 7 405 139 HOH HOH . 
Y 5 HOH E 8 406 145 HOH HOH . 
Y 5 HOH E 9 407 156 HOH HOH . 
Y 5 HOH E 10 408 161 HOH HOH . 
Y 5 HOH E 11 409 198 HOH HOH . 
Y 5 HOH E 12 410 218 HOH HOH . 
Y 5 HOH E 13 411 259 HOH HOH . 
Z 5 HOH F 1 104 104 HOH HOH . 
Z 5 HOH F 2 106 106 HOH HOH . 
Z 5 HOH F 3 111 111 HOH HOH . 
Z 5 HOH F 4 121 121 HOH HOH . 
Z 5 HOH F 5 134 134 HOH HOH . 
Z 5 HOH F 6 401 13 HOH HOH . 
Z 5 HOH F 7 402 65 HOH HOH . 
Z 5 HOH F 8 403 69 HOH HOH . 
Z 5 HOH F 9 404 82 HOH HOH . 
Z 5 HOH F 10 405 169 HOH HOH . 
Z 5 HOH F 11 406 210 HOH HOH . 
Z 5 HOH F 12 407 213 HOH HOH . 
Z 5 HOH F 13 408 244 HOH HOH . 
Z 5 HOH F 14 409 246 HOH HOH . 
Z 5 HOH F 15 410 270 HOH HOH . 
Z 5 HOH F 16 411 271 HOH HOH . 
Z 5 HOH F 17 412 278 HOH HOH . 
AA 5 HOH G 1 124 124 HOH HOH . 
AA 5 HOH G 2 401 31 HOH HOH . 
AA 5 HOH G 3 402 58 HOH HOH . 
AA 5 HOH G 4 403 74 HOH HOH . 
AA 5 HOH G 5 404 178 HOH HOH . 
AA 5 HOH G 6 405 187 HOH HOH . 
AA 5 HOH G 7 406 222 HOH HOH . 
AA 5 HOH G 8 407 229 HOH HOH . 
AA 5 HOH G 9 408 265 HOH HOH . 
BA 5 HOH H 1 101 101 HOH HOH . 
BA 5 HOH H 2 102 102 HOH HOH . 
BA 5 HOH H 3 401 19 HOH HOH . 
BA 5 HOH H 4 402 76 HOH HOH . 
BA 5 HOH H 5 403 85 HOH HOH . 
BA 5 HOH H 6 404 160 HOH HOH . 
BA 5 HOH H 7 405 174 HOH HOH . 
BA 5 HOH H 8 406 192 HOH HOH . 
BA 5 HOH H 9 407 209 HOH HOH . 
BA 5 HOH H 10 408 240 HOH HOH . 
BA 5 HOH H 11 409 253 HOH HOH . 
BA 5 HOH H 12 410 262 HOH HOH . 
BA 5 HOH H 13 411 266 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P IMP . . . I 2 -5.39 14.622 11.534 1 57.48 ? P IMP 801 A 1 
HETATM 2 O O1P IMP . . . I 2 -4.469 13.615 10.888 1 57.42 ? O1P IMP 801 A 1 
HETATM 3 O O2P IMP . . . I 2 -4.693 15.953 11.666 1 57.4 ? O2P IMP 801 A 1 
HETATM 4 O O3P IMP . . . I 2 -5.814 14.139 12.899 1 57.56 ? O3P IMP 801 A 1 
HETATM 5 O O5' IMP . . . I 2 -6.678 14.782 10.585 1 58.46 ? O5' IMP 801 A 1 
HETATM 6 C C5' IMP . . . I 2 -7.792 15.563 10.956 1 59.67 ? C5' IMP 801 A 1 
HETATM 7 C C4' IMP . . . I 2 -8.797 15.495 9.815 1 60.56 ? C4' IMP 801 A 1 
HETATM 8 O O4' IMP . . . I 2 -9.115 14.145 9.532 1 61.19 ? O4' IMP 801 A 1 
HETATM 9 C C3' IMP . . . I 2 -10.111 16.189 10.129 1 60.87 ? C3' IMP 801 A 1 
HETATM 10 O O3' IMP . . . I 2 -10.105 17.534 9.712 1 60.85 ? O3' IMP 801 A 1 
HETATM 11 C C2' IMP . . . I 2 -11.135 15.36 9.376 1 61.19 ? C2' IMP 801 A 1 
HETATM 12 O O2' IMP . . . I 2 -11.36 15.866 8.082 1 60.72 ? O2' IMP 801 A 1 
HETATM 13 C C1' IMP . . . I 2 -10.494 13.988 9.257 1 61.87 ? C1' IMP 801 A 1 
HETATM 14 N N9 IMP . . . I 2 -11.114 13.072 10.236 1 62.31 ? N9 IMP 801 A 1 
HETATM 15 C C8 IMP . . . I 2 -11.012 13.15 11.604 1 62.48 ? C8 IMP 801 A 1 
HETATM 16 N N7 IMP . . . I 2 -11.724 12.141 12.152 1 62.61 ? N7 IMP 801 A 1 
HETATM 17 C C5 IMP . . . I 2 -12.279 11.414 11.158 1 62.58 ? C5 IMP 801 A 1 
HETATM 18 C C6 IMP . . . I 2 -13.093 10.284 11.165 1 62.4 ? C6 IMP 801 A 1 
HETATM 19 O O6 IMP . . . I 2 -13.411 9.762 12.232 1 62.27 ? O6 IMP 801 A 1 
HETATM 20 N N1 IMP . . . I 2 -13.524 9.743 9.965 1 62.5 ? N1 IMP 801 A 1 
HETATM 21 C C2 IMP . . . I 2 -13.147 10.325 8.765 1 62.45 ? C2 IMP 801 A 1 
HETATM 22 N N3 IMP . . . I 2 -12.336 11.448 8.768 1 62.58 ? N3 IMP 801 A 1 
HETATM 23 C C4 IMP . . . I 2 -11.907 11.987 9.943 1 62.54 ? C4 IMP 801 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           23 
#