data_3KHM # _model_server_result.job_id b98QfS7pcENVD34SYFxkSQ _model_server_result.datetime_utc '2024-10-13 13:18:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3khm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3KHM # _exptl.entry_id 3KHM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.271 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(2,4-DIFLUOROPHENYL)-1,3-DI(1H-1,2,4-TRIAZOL-1-YL)PROPAN-2-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KHM _cell.length_a 62.591 _cell.length_b 62.591 _cell.length_c 222.248 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KHM _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 399 A CYS 422 1_555 B FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc2 B FE HEM . A HEM 500 1_555 C N5 TPF . A TPF 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? # _chem_comp.formula 'C13 H12 F2 N6 O' _chem_comp.formula_weight 306.271 _chem_comp.id TPF _chem_comp.mon_nstd_flag . _chem_comp.name 2-(2,4-DIFLUOROPHENYL)-1,3-DI(1H-1,2,4-TRIAZOL-1-YL)PROPAN-2-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms FLUCONAZOLE;ALPHA-(2,4-DIFLUOROPHENYL)-ALPHA-(1H-1,2,4-TRIAZOLE-1-YLMETHYL)-1H-1,2,4-TRIAZOLE-1-ETHANOL;ELAZOR;TRIFLUCAN;BIOZOLENE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C1 TPF sing 386 n n O HO TPF sing 387 n n C1 C2 TPF sing 388 n n C1 C5 TPF sing 389 n n C1 C8 TPF sing 390 n n C2 N1 TPF sing 391 n n C2 HC21 TPF sing 392 n n C2 HC22 TPF sing 393 n n C5 N4 TPF sing 394 n n C5 HC51 TPF sing 395 n n C5 HC52 TPF sing 396 n n C8 C9 TPF doub 397 n y C8 C13 TPF sing 398 n y N1 C3 TPF sing 399 n y N1 N3 TPF sing 400 n y C3 N2 TPF doub 401 n y C3 HC3 TPF sing 402 n n N3 C4 TPF doub 403 n y N2 C4 TPF sing 404 n y C4 HC4 TPF sing 405 n n N4 C6 TPF sing 406 n y N4 N6 TPF sing 407 n y C6 N5 TPF doub 408 n y C6 HC6 TPF sing 409 n n N6 C7 TPF doub 410 n y N5 C7 TPF sing 411 n y C7 HC7 TPF sing 412 n n C9 C10 TPF sing 413 n y C9 HC9 TPF sing 414 n n C13 C12 TPF doub 415 n y C13 F2 TPF sing 416 n n C10 C11 TPF doub 417 n y C10 H10 TPF sing 418 n n C11 F1 TPF sing 419 n n C11 C12 TPF sing 420 n y C12 H12 TPF sing 421 n n # _atom_sites.entry_id 3KHM _atom_sites.fract_transf_matrix[1][1] 0.015977 _atom_sites.fract_transf_matrix[1][2] 0.009224 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018448 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004499 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 500 500 HEM HEM . C 3 TPF A 1 501 501 TPF TPF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O TPF . . . C 3 1.595 -22.606 19.056 1 51.6 ? O TPF 501 A 1 HETATM 2 C C1 TPF . . . C 3 2.277 -23.703 18.441 1 50.4 ? C1 TPF 501 A 1 HETATM 3 C C2 TPF . . . C 3 2.27 -23.537 16.924 1 49.86 ? C2 TPF 501 A 1 HETATM 4 C C5 TPF . . . C 3 3.708 -23.757 18.963 1 49.52 ? C5 TPF 501 A 1 HETATM 5 C C8 TPF . . . C 3 1.577 -24.98 18.797 1 50.24 ? C8 TPF 501 A 1 HETATM 6 N N1 TPF . . . C 3 1.616 -22.278 16.539 1 50.97 ? N1 TPF 501 A 1 HETATM 7 C C3 TPF . . . C 3 1.658 -21.33 17.632 1 52.97 ? C3 TPF 501 A 1 HETATM 8 N N3 TPF . . . C 3 2.328 -21.688 15.481 1 51.8 ? N3 TPF 501 A 1 HETATM 9 N N2 TPF . . . C 3 2.359 -20.261 17.19 1 51.36 ? N2 TPF 501 A 1 HETATM 10 C C4 TPF . . . C 3 2.76 -20.477 15.909 1 51.24 ? C4 TPF 501 A 1 HETATM 11 N N4 TPF . . . C 3 4.25 -25.101 18.732 1 49.15 ? N4 TPF 501 A 1 HETATM 12 C C6 TPF . . . C 3 4.532 -25.743 19.997 1 47.8 ? C6 TPF 501 A 1 HETATM 13 N N6 TPF . . . C 3 5.473 -25.018 18.047 1 48.63 ? N6 TPF 501 A 1 HETATM 14 N N5 TPF . . . C 3 5.855 -26.014 20.001 1 46.39 ? N5 TPF 501 A 1 HETATM 15 C C7 TPF . . . C 3 6.414 -25.583 18.84 1 48.69 ? C7 TPF 501 A 1 HETATM 16 C C9 TPF . . . C 3 0.823 -25.062 19.962 1 50.13 ? C9 TPF 501 A 1 HETATM 17 C C13 TPF . . . C 3 1.686 -26.08 17.964 1 50.24 ? C13 TPF 501 A 1 HETATM 18 C C10 TPF . . . C 3 0.175 -26.248 20.288 1 51.26 ? C10 TPF 501 A 1 HETATM 19 C C11 TPF . . . C 3 0.285 -27.352 19.45 1 52.41 ? C11 TPF 501 A 1 HETATM 20 F F1 TPF . . . C 3 -0.339 -28.502 19.764 1 53.32 ? F1 TPF 501 A 1 HETATM 21 C C12 TPF . . . C 3 1.041 -27.268 18.288 1 51.34 ? C12 TPF 501 A 1 HETATM 22 F F2 TPF . . . C 3 2.417 -25.996 16.84 1 51.9 ? F2 TPF 501 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 22 #