data_3KHS # _model_server_result.job_id vgeaZe8EP1neIA0RCcM18w _model_server_result.datetime_utc '2024-11-05 00:20:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3khs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":292}' # _entry.id 3KHS # _exptl.entry_id 3KHS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KHS _cell.length_a 193.048 _cell.length_b 193.048 _cell.length_c 105.629 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KHS _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,E,F,G,H,I,J,M,N,O 1 1 D,K,L,P 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 96.524 167.184472 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -96.524 167.184472 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 203 A CYS 203 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 B SG CYS 203 B CYS 203 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 C SG CYS 203 C CYS 203 1_555 C SG CYS 246 C CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 D SG CYS 203 D CYS 203 1_555 D SG CYS 246 D CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 3KHS _atom_sites.fract_transf_matrix[1][1] 0.00518 _atom_sites.fract_transf_matrix[1][2] 0.002991 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 A 1 290 290 PO4 PO4 . F 3 TRS A 1 294 294 TRS TRS . G 2 PO4 B 1 291 291 PO4 PO4 . H 3 TRS B 1 295 295 TRS TRS . I 2 PO4 C 1 292 292 PO4 PO4 . J 3 TRS C 1 296 296 TRS TRS . K 2 PO4 D 1 293 293 PO4 PO4 . L 3 TRS D 1 297 297 TRS TRS . M 4 HOH A 1 303 303 HOH HOH . M 4 HOH A 2 304 304 HOH HOH . M 4 HOH A 3 313 313 HOH HOH . M 4 HOH A 4 324 324 HOH HOH . M 4 HOH A 5 328 328 HOH HOH . M 4 HOH A 6 329 329 HOH HOH . M 4 HOH A 7 338 338 HOH HOH . M 4 HOH A 8 339 339 HOH HOH . M 4 HOH A 9 341 341 HOH HOH . M 4 HOH A 10 344 344 HOH HOH . M 4 HOH A 11 347 347 HOH HOH . M 4 HOH A 12 351 351 HOH HOH . M 4 HOH A 13 353 353 HOH HOH . M 4 HOH A 14 355 355 HOH HOH . M 4 HOH A 15 363 363 HOH HOH . M 4 HOH A 16 366 366 HOH HOH . M 4 HOH A 17 370 370 HOH HOH . M 4 HOH A 18 373 373 HOH HOH . M 4 HOH A 19 374 374 HOH HOH . M 4 HOH A 20 377 377 HOH HOH . M 4 HOH A 21 384 384 HOH HOH . M 4 HOH A 22 387 387 HOH HOH . M 4 HOH A 23 398 398 HOH HOH . M 4 HOH A 24 408 408 HOH HOH . M 4 HOH A 25 412 412 HOH HOH . M 4 HOH A 26 417 417 HOH HOH . M 4 HOH A 27 421 421 HOH HOH . M 4 HOH A 28 422 422 HOH HOH . M 4 HOH A 29 424 424 HOH HOH . M 4 HOH A 30 431 431 HOH HOH . M 4 HOH A 31 439 439 HOH HOH . M 4 HOH A 32 441 441 HOH HOH . M 4 HOH A 33 442 442 HOH HOH . M 4 HOH A 34 452 452 HOH HOH . M 4 HOH A 35 456 456 HOH HOH . M 4 HOH A 36 461 461 HOH HOH . M 4 HOH A 37 466 466 HOH HOH . M 4 HOH A 38 471 471 HOH HOH . M 4 HOH A 39 477 477 HOH HOH . M 4 HOH A 40 482 482 HOH HOH . M 4 HOH A 41 491 491 HOH HOH . M 4 HOH A 42 492 492 HOH HOH . M 4 HOH A 43 493 493 HOH HOH . M 4 HOH A 44 494 494 HOH HOH . N 4 HOH B 1 302 302 HOH HOH . N 4 HOH B 2 305 305 HOH HOH . N 4 HOH B 3 306 306 HOH HOH . N 4 HOH B 4 311 311 HOH HOH . N 4 HOH B 5 312 312 HOH HOH . N 4 HOH B 6 317 317 HOH HOH . N 4 HOH B 7 319 319 HOH HOH . N 4 HOH B 8 322 322 HOH HOH . N 4 HOH B 9 330 330 HOH HOH . N 4 HOH B 10 332 332 HOH HOH . N 4 HOH B 11 335 335 HOH HOH . N 4 HOH B 12 340 340 HOH HOH . N 4 HOH B 13 342 342 HOH HOH . N 4 HOH B 14 345 345 HOH HOH . N 4 HOH B 15 348 348 HOH HOH . N 4 HOH B 16 350 350 HOH HOH . N 4 HOH B 17 356 356 HOH HOH . N 4 HOH B 18 359 359 HOH HOH . N 4 HOH B 19 364 364 HOH HOH . N 4 HOH B 20 365 365 HOH HOH . N 4 HOH B 21 367 367 HOH HOH . N 4 HOH B 22 368 368 HOH HOH . N 4 HOH B 23 372 372 HOH HOH . N 4 HOH B 24 380 380 HOH HOH . N 4 HOH B 25 381 381 HOH HOH . N 4 HOH B 26 389 389 HOH HOH . N 4 HOH B 27 395 395 HOH HOH . N 4 HOH B 28 400 400 HOH HOH . N 4 HOH B 29 401 401 HOH HOH . N 4 HOH B 30 402 402 HOH HOH . N 4 HOH B 31 403 403 HOH HOH . N 4 HOH B 32 404 404 HOH HOH . N 4 HOH B 33 405 405 HOH HOH . N 4 HOH B 34 406 406 HOH HOH . N 4 HOH B 35 409 409 HOH HOH . N 4 HOH B 36 411 411 HOH HOH . N 4 HOH B 37 418 418 HOH HOH . N 4 HOH B 38 419 419 HOH HOH . N 4 HOH B 39 420 420 HOH HOH . N 4 HOH B 40 425 425 HOH HOH . N 4 HOH B 41 429 429 HOH HOH . N 4 HOH B 42 433 433 HOH HOH . N 4 HOH B 43 435 435 HOH HOH . N 4 HOH B 44 436 436 HOH HOH . N 4 HOH B 45 437 437 HOH HOH . N 4 HOH B 46 446 446 HOH HOH . N 4 HOH B 47 457 457 HOH HOH . N 4 HOH B 48 458 458 HOH HOH . N 4 HOH B 49 462 462 HOH HOH . N 4 HOH B 50 464 464 HOH HOH . N 4 HOH B 51 465 465 HOH HOH . N 4 HOH B 52 467 467 HOH HOH . N 4 HOH B 53 468 468 HOH HOH . N 4 HOH B 54 470 470 HOH HOH . N 4 HOH B 55 472 472 HOH HOH . N 4 HOH B 56 475 475 HOH HOH . N 4 HOH B 57 476 476 HOH HOH . N 4 HOH B 58 478 478 HOH HOH . N 4 HOH B 59 486 486 HOH HOH . N 4 HOH B 60 487 487 HOH HOH . N 4 HOH B 61 488 488 HOH HOH . N 4 HOH B 62 489 489 HOH HOH . N 4 HOH B 63 490 490 HOH HOH . O 4 HOH C 1 300 300 HOH HOH . O 4 HOH C 2 301 301 HOH HOH . O 4 HOH C 3 307 307 HOH HOH . O 4 HOH C 4 308 308 HOH HOH . O 4 HOH C 5 310 310 HOH HOH . O 4 HOH C 6 315 315 HOH HOH . O 4 HOH C 7 316 316 HOH HOH . O 4 HOH C 8 321 321 HOH HOH . O 4 HOH C 9 323 323 HOH HOH . O 4 HOH C 10 325 325 HOH HOH . O 4 HOH C 11 326 326 HOH HOH . O 4 HOH C 12 327 327 HOH HOH . O 4 HOH C 13 331 331 HOH HOH . O 4 HOH C 14 336 336 HOH HOH . O 4 HOH C 15 337 337 HOH HOH . O 4 HOH C 16 343 343 HOH HOH . O 4 HOH C 17 346 346 HOH HOH . O 4 HOH C 18 349 349 HOH HOH . O 4 HOH C 19 352 352 HOH HOH . O 4 HOH C 20 357 357 HOH HOH . O 4 HOH C 21 360 360 HOH HOH . O 4 HOH C 22 361 361 HOH HOH . O 4 HOH C 23 362 362 HOH HOH . O 4 HOH C 24 369 369 HOH HOH . O 4 HOH C 25 371 371 HOH HOH . O 4 HOH C 26 375 375 HOH HOH . O 4 HOH C 27 376 376 HOH HOH . O 4 HOH C 28 378 378 HOH HOH . O 4 HOH C 29 382 382 HOH HOH . O 4 HOH C 30 383 383 HOH HOH . O 4 HOH C 31 385 385 HOH HOH . O 4 HOH C 32 386 386 HOH HOH . O 4 HOH C 33 388 388 HOH HOH . O 4 HOH C 34 390 390 HOH HOH . O 4 HOH C 35 391 391 HOH HOH . O 4 HOH C 36 392 392 HOH HOH . O 4 HOH C 37 393 393 HOH HOH . O 4 HOH C 38 394 394 HOH HOH . O 4 HOH C 39 396 396 HOH HOH . O 4 HOH C 40 397 397 HOH HOH . O 4 HOH C 41 407 407 HOH HOH . O 4 HOH C 42 410 410 HOH HOH . O 4 HOH C 43 413 413 HOH HOH . O 4 HOH C 44 415 415 HOH HOH . O 4 HOH C 45 416 416 HOH HOH . O 4 HOH C 46 423 423 HOH HOH . O 4 HOH C 47 426 426 HOH HOH . O 4 HOH C 48 428 428 HOH HOH . O 4 HOH C 49 432 432 HOH HOH . O 4 HOH C 50 438 438 HOH HOH . O 4 HOH C 51 440 440 HOH HOH . O 4 HOH C 52 444 444 HOH HOH . O 4 HOH C 53 448 448 HOH HOH . O 4 HOH C 54 449 449 HOH HOH . O 4 HOH C 55 450 450 HOH HOH . O 4 HOH C 56 451 451 HOH HOH . O 4 HOH C 57 453 453 HOH HOH . O 4 HOH C 58 454 454 HOH HOH . O 4 HOH C 59 463 463 HOH HOH . O 4 HOH C 60 469 469 HOH HOH . O 4 HOH C 61 474 474 HOH HOH . O 4 HOH C 62 479 479 HOH HOH . O 4 HOH C 63 481 481 HOH HOH . O 4 HOH C 64 483 483 HOH HOH . O 4 HOH C 65 484 484 HOH HOH . P 4 HOH D 1 309 309 HOH HOH . P 4 HOH D 2 314 314 HOH HOH . P 4 HOH D 3 318 318 HOH HOH . P 4 HOH D 4 320 320 HOH HOH . P 4 HOH D 5 333 333 HOH HOH . P 4 HOH D 6 334 334 HOH HOH . P 4 HOH D 7 354 354 HOH HOH . P 4 HOH D 8 358 358 HOH HOH . P 4 HOH D 9 379 379 HOH HOH . P 4 HOH D 10 399 399 HOH HOH . P 4 HOH D 11 414 414 HOH HOH . P 4 HOH D 12 427 427 HOH HOH . P 4 HOH D 13 430 430 HOH HOH . P 4 HOH D 14 434 434 HOH HOH . P 4 HOH D 15 443 443 HOH HOH . P 4 HOH D 16 445 445 HOH HOH . P 4 HOH D 17 447 447 HOH HOH . P 4 HOH D 18 455 455 HOH HOH . P 4 HOH D 19 459 459 HOH HOH . P 4 HOH D 20 460 460 HOH HOH . P 4 HOH D 21 473 473 HOH HOH . P 4 HOH D 22 480 480 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . I 2 28.4 76.319 26.463 1 51.51 ? P PO4 292 C 1 HETATM 2 O O1 PO4 . . . I 2 27.898 76.444 27.864 1 49.42 ? O1 PO4 292 C 1 HETATM 3 O O2 PO4 . . . I 2 28.531 74.866 26.108 1 37.18 ? O2 PO4 292 C 1 HETATM 4 O O3 PO4 . . . I 2 27.429 77.002 25.53 1 41.26 ? O3 PO4 292 C 1 HETATM 5 O O4 PO4 . . . I 2 29.744 76.965 26.344 1 47.49 ? O4 PO4 292 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #