data_3KHS
#
_model_server_result.job_id            anDACxIarncUYbpYi9vrzQ 
_model_server_result.datetime_utc      '2024-11-05 00:19:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3khs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":297}' 
#
_entry.id    3KHS 
#
_exptl.entry_id    3KHS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3KHS 
_cell.length_a            193.048 
_cell.length_b            193.048 
_cell.length_c            105.629 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KHS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,E,F,G,H,I,J,M,N,O 1 1 
D,K,L,P 2 1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 96.524 167.184472 0 
3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -96.524 167.184472 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 203 A CYS 203 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf2 B SG CYS 203 B CYS 203 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf3 C SG CYS 203 C CYS 203 1_555 C SG CYS 246 C CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf4 D SG CYS 203 D CYS 203 1_555 D SG CYS 246 D CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                TRS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TRIS BUFFER' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 TRS sing 338 n n 
C C2 TRS sing 339 n n 
C C3 TRS sing 340 n n 
C N TRS sing 341 n n 
C1 O1 TRS sing 342 n n 
C1 H11 TRS sing 343 n n 
C1 H12 TRS sing 344 n n 
C2 O2 TRS sing 345 n n 
C2 H21 TRS sing 346 n n 
C2 H22 TRS sing 347 n n 
C3 O3 TRS sing 348 n n 
C3 H31 TRS sing 349 n n 
C3 H32 TRS sing 350 n n 
N HN1 TRS sing 351 n n 
N HN2 TRS sing 352 n n 
N HN3 TRS sing 353 n n 
O1 HO1 TRS sing 354 n n 
O2 HO2 TRS sing 355 n n 
O3 HO3 TRS sing 356 n n 
#
_atom_sites.entry_id                     3KHS 
_atom_sites.fract_transf_matrix[1][1]    0.00518 
_atom_sites.fract_transf_matrix[1][2]    0.002991 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005981 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009467 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PO4 A 1 290 290 PO4 PO4 . 
F 3 TRS A 1 294 294 TRS TRS . 
G 2 PO4 B 1 291 291 PO4 PO4 . 
H 3 TRS B 1 295 295 TRS TRS . 
I 2 PO4 C 1 292 292 PO4 PO4 . 
J 3 TRS C 1 296 296 TRS TRS . 
K 2 PO4 D 1 293 293 PO4 PO4 . 
L 3 TRS D 1 297 297 TRS TRS . 
M 4 HOH A 1 303 303 HOH HOH . 
M 4 HOH A 2 304 304 HOH HOH . 
M 4 HOH A 3 313 313 HOH HOH . 
M 4 HOH A 4 324 324 HOH HOH . 
M 4 HOH A 5 328 328 HOH HOH . 
M 4 HOH A 6 329 329 HOH HOH . 
M 4 HOH A 7 338 338 HOH HOH . 
M 4 HOH A 8 339 339 HOH HOH . 
M 4 HOH A 9 341 341 HOH HOH . 
M 4 HOH A 10 344 344 HOH HOH . 
M 4 HOH A 11 347 347 HOH HOH . 
M 4 HOH A 12 351 351 HOH HOH . 
M 4 HOH A 13 353 353 HOH HOH . 
M 4 HOH A 14 355 355 HOH HOH . 
M 4 HOH A 15 363 363 HOH HOH . 
M 4 HOH A 16 366 366 HOH HOH . 
M 4 HOH A 17 370 370 HOH HOH . 
M 4 HOH A 18 373 373 HOH HOH . 
M 4 HOH A 19 374 374 HOH HOH . 
M 4 HOH A 20 377 377 HOH HOH . 
M 4 HOH A 21 384 384 HOH HOH . 
M 4 HOH A 22 387 387 HOH HOH . 
M 4 HOH A 23 398 398 HOH HOH . 
M 4 HOH A 24 408 408 HOH HOH . 
M 4 HOH A 25 412 412 HOH HOH . 
M 4 HOH A 26 417 417 HOH HOH . 
M 4 HOH A 27 421 421 HOH HOH . 
M 4 HOH A 28 422 422 HOH HOH . 
M 4 HOH A 29 424 424 HOH HOH . 
M 4 HOH A 30 431 431 HOH HOH . 
M 4 HOH A 31 439 439 HOH HOH . 
M 4 HOH A 32 441 441 HOH HOH . 
M 4 HOH A 33 442 442 HOH HOH . 
M 4 HOH A 34 452 452 HOH HOH . 
M 4 HOH A 35 456 456 HOH HOH . 
M 4 HOH A 36 461 461 HOH HOH . 
M 4 HOH A 37 466 466 HOH HOH . 
M 4 HOH A 38 471 471 HOH HOH . 
M 4 HOH A 39 477 477 HOH HOH . 
M 4 HOH A 40 482 482 HOH HOH . 
M 4 HOH A 41 491 491 HOH HOH . 
M 4 HOH A 42 492 492 HOH HOH . 
M 4 HOH A 43 493 493 HOH HOH . 
M 4 HOH A 44 494 494 HOH HOH . 
N 4 HOH B 1 302 302 HOH HOH . 
N 4 HOH B 2 305 305 HOH HOH . 
N 4 HOH B 3 306 306 HOH HOH . 
N 4 HOH B 4 311 311 HOH HOH . 
N 4 HOH B 5 312 312 HOH HOH . 
N 4 HOH B 6 317 317 HOH HOH . 
N 4 HOH B 7 319 319 HOH HOH . 
N 4 HOH B 8 322 322 HOH HOH . 
N 4 HOH B 9 330 330 HOH HOH . 
N 4 HOH B 10 332 332 HOH HOH . 
N 4 HOH B 11 335 335 HOH HOH . 
N 4 HOH B 12 340 340 HOH HOH . 
N 4 HOH B 13 342 342 HOH HOH . 
N 4 HOH B 14 345 345 HOH HOH . 
N 4 HOH B 15 348 348 HOH HOH . 
N 4 HOH B 16 350 350 HOH HOH . 
N 4 HOH B 17 356 356 HOH HOH . 
N 4 HOH B 18 359 359 HOH HOH . 
N 4 HOH B 19 364 364 HOH HOH . 
N 4 HOH B 20 365 365 HOH HOH . 
N 4 HOH B 21 367 367 HOH HOH . 
N 4 HOH B 22 368 368 HOH HOH . 
N 4 HOH B 23 372 372 HOH HOH . 
N 4 HOH B 24 380 380 HOH HOH . 
N 4 HOH B 25 381 381 HOH HOH . 
N 4 HOH B 26 389 389 HOH HOH . 
N 4 HOH B 27 395 395 HOH HOH . 
N 4 HOH B 28 400 400 HOH HOH . 
N 4 HOH B 29 401 401 HOH HOH . 
N 4 HOH B 30 402 402 HOH HOH . 
N 4 HOH B 31 403 403 HOH HOH . 
N 4 HOH B 32 404 404 HOH HOH . 
N 4 HOH B 33 405 405 HOH HOH . 
N 4 HOH B 34 406 406 HOH HOH . 
N 4 HOH B 35 409 409 HOH HOH . 
N 4 HOH B 36 411 411 HOH HOH . 
N 4 HOH B 37 418 418 HOH HOH . 
N 4 HOH B 38 419 419 HOH HOH . 
N 4 HOH B 39 420 420 HOH HOH . 
N 4 HOH B 40 425 425 HOH HOH . 
N 4 HOH B 41 429 429 HOH HOH . 
N 4 HOH B 42 433 433 HOH HOH . 
N 4 HOH B 43 435 435 HOH HOH . 
N 4 HOH B 44 436 436 HOH HOH . 
N 4 HOH B 45 437 437 HOH HOH . 
N 4 HOH B 46 446 446 HOH HOH . 
N 4 HOH B 47 457 457 HOH HOH . 
N 4 HOH B 48 458 458 HOH HOH . 
N 4 HOH B 49 462 462 HOH HOH . 
N 4 HOH B 50 464 464 HOH HOH . 
N 4 HOH B 51 465 465 HOH HOH . 
N 4 HOH B 52 467 467 HOH HOH . 
N 4 HOH B 53 468 468 HOH HOH . 
N 4 HOH B 54 470 470 HOH HOH . 
N 4 HOH B 55 472 472 HOH HOH . 
N 4 HOH B 56 475 475 HOH HOH . 
N 4 HOH B 57 476 476 HOH HOH . 
N 4 HOH B 58 478 478 HOH HOH . 
N 4 HOH B 59 486 486 HOH HOH . 
N 4 HOH B 60 487 487 HOH HOH . 
N 4 HOH B 61 488 488 HOH HOH . 
N 4 HOH B 62 489 489 HOH HOH . 
N 4 HOH B 63 490 490 HOH HOH . 
O 4 HOH C 1 300 300 HOH HOH . 
O 4 HOH C 2 301 301 HOH HOH . 
O 4 HOH C 3 307 307 HOH HOH . 
O 4 HOH C 4 308 308 HOH HOH . 
O 4 HOH C 5 310 310 HOH HOH . 
O 4 HOH C 6 315 315 HOH HOH . 
O 4 HOH C 7 316 316 HOH HOH . 
O 4 HOH C 8 321 321 HOH HOH . 
O 4 HOH C 9 323 323 HOH HOH . 
O 4 HOH C 10 325 325 HOH HOH . 
O 4 HOH C 11 326 326 HOH HOH . 
O 4 HOH C 12 327 327 HOH HOH . 
O 4 HOH C 13 331 331 HOH HOH . 
O 4 HOH C 14 336 336 HOH HOH . 
O 4 HOH C 15 337 337 HOH HOH . 
O 4 HOH C 16 343 343 HOH HOH . 
O 4 HOH C 17 346 346 HOH HOH . 
O 4 HOH C 18 349 349 HOH HOH . 
O 4 HOH C 19 352 352 HOH HOH . 
O 4 HOH C 20 357 357 HOH HOH . 
O 4 HOH C 21 360 360 HOH HOH . 
O 4 HOH C 22 361 361 HOH HOH . 
O 4 HOH C 23 362 362 HOH HOH . 
O 4 HOH C 24 369 369 HOH HOH . 
O 4 HOH C 25 371 371 HOH HOH . 
O 4 HOH C 26 375 375 HOH HOH . 
O 4 HOH C 27 376 376 HOH HOH . 
O 4 HOH C 28 378 378 HOH HOH . 
O 4 HOH C 29 382 382 HOH HOH . 
O 4 HOH C 30 383 383 HOH HOH . 
O 4 HOH C 31 385 385 HOH HOH . 
O 4 HOH C 32 386 386 HOH HOH . 
O 4 HOH C 33 388 388 HOH HOH . 
O 4 HOH C 34 390 390 HOH HOH . 
O 4 HOH C 35 391 391 HOH HOH . 
O 4 HOH C 36 392 392 HOH HOH . 
O 4 HOH C 37 393 393 HOH HOH . 
O 4 HOH C 38 394 394 HOH HOH . 
O 4 HOH C 39 396 396 HOH HOH . 
O 4 HOH C 40 397 397 HOH HOH . 
O 4 HOH C 41 407 407 HOH HOH . 
O 4 HOH C 42 410 410 HOH HOH . 
O 4 HOH C 43 413 413 HOH HOH . 
O 4 HOH C 44 415 415 HOH HOH . 
O 4 HOH C 45 416 416 HOH HOH . 
O 4 HOH C 46 423 423 HOH HOH . 
O 4 HOH C 47 426 426 HOH HOH . 
O 4 HOH C 48 428 428 HOH HOH . 
O 4 HOH C 49 432 432 HOH HOH . 
O 4 HOH C 50 438 438 HOH HOH . 
O 4 HOH C 51 440 440 HOH HOH . 
O 4 HOH C 52 444 444 HOH HOH . 
O 4 HOH C 53 448 448 HOH HOH . 
O 4 HOH C 54 449 449 HOH HOH . 
O 4 HOH C 55 450 450 HOH HOH . 
O 4 HOH C 56 451 451 HOH HOH . 
O 4 HOH C 57 453 453 HOH HOH . 
O 4 HOH C 58 454 454 HOH HOH . 
O 4 HOH C 59 463 463 HOH HOH . 
O 4 HOH C 60 469 469 HOH HOH . 
O 4 HOH C 61 474 474 HOH HOH . 
O 4 HOH C 62 479 479 HOH HOH . 
O 4 HOH C 63 481 481 HOH HOH . 
O 4 HOH C 64 483 483 HOH HOH . 
O 4 HOH C 65 484 484 HOH HOH . 
P 4 HOH D 1 309 309 HOH HOH . 
P 4 HOH D 2 314 314 HOH HOH . 
P 4 HOH D 3 318 318 HOH HOH . 
P 4 HOH D 4 320 320 HOH HOH . 
P 4 HOH D 5 333 333 HOH HOH . 
P 4 HOH D 6 334 334 HOH HOH . 
P 4 HOH D 7 354 354 HOH HOH . 
P 4 HOH D 8 358 358 HOH HOH . 
P 4 HOH D 9 379 379 HOH HOH . 
P 4 HOH D 10 399 399 HOH HOH . 
P 4 HOH D 11 414 414 HOH HOH . 
P 4 HOH D 12 427 427 HOH HOH . 
P 4 HOH D 13 430 430 HOH HOH . 
P 4 HOH D 14 434 434 HOH HOH . 
P 4 HOH D 15 443 443 HOH HOH . 
P 4 HOH D 16 445 445 HOH HOH . 
P 4 HOH D 17 447 447 HOH HOH . 
P 4 HOH D 18 455 455 HOH HOH . 
P 4 HOH D 19 459 459 HOH HOH . 
P 4 HOH D 20 460 460 HOH HOH . 
P 4 HOH D 21 473 473 HOH HOH . 
P 4 HOH D 22 480 480 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TRS . . . L 3 10.453 95.801 60.067 1 59.62 ? C TRS 297 D 1 
HETATM 2 C C1 TRS . . . L 3 10.277 96.952 61.079 1 63.08 ? C1 TRS 297 D 1 
HETATM 3 C C2 TRS . . . L 3 9.757 96.2 58.75 1 54.27 ? C2 TRS 297 D 1 
HETATM 4 C C3 TRS . . . L 3 9.808 94.54 60.652 1 60.97 ? C3 TRS 297 D 1 
HETATM 5 N N TRS . . . L 3 11.873 95.523 59.811 1 59.68 ? N TRS 297 D 1 
HETATM 6 O O1 TRS . . . L 3 10.885 98.164 60.597 1 58.66 ? O1 TRS 297 D 1 
HETATM 7 O O2 TRS . . . L 3 9.913 95.151 57.79 1 60.21 ? O2 TRS 297 D 1 
HETATM 8 O O3 TRS . . . L 3 9.989 93.439 59.753 1 68.35 ? O3 TRS 297 D 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#