data_3KHV # _model_server_result.job_id TiiExesNXoK9msJ28mpsMA _model_server_result.datetime_utc '2024-12-13 02:39:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3khv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":5115}' # _entry.id 3KHV # _exptl.entry_id 3KHV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KHV _cell.length_a 120.826 _cell.length_b 120.826 _cell.length_c 42.355 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KHV _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 A CYS 42 1_555 A SG CYS 47 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 39 A CYS 50 1_555 A SG CYS 110 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.243 ? disulf ? disulf3 A SG CYS 135 A CYS 136 1_555 A SG CYS 204 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 167 A CYS 168 1_555 A SG CYS 183 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 A SG CYS 194 A CYS 191 1_555 A SG CYS 222 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 258 n n C1 C2 PGE sing 259 n n C1 H1 PGE sing 260 n n C1 H12 PGE sing 261 n n O1 HO1 PGE sing 262 n n C2 O2 PGE sing 263 n n C2 H2 PGE sing 264 n n C2 H22 PGE sing 265 n n O2 C3 PGE sing 266 n n C3 C4 PGE sing 267 n n C3 H3 PGE sing 268 n n C3 H32 PGE sing 269 n n C4 O3 PGE sing 270 n n C4 H4 PGE sing 271 n n C4 H42 PGE sing 272 n n O4 C6 PGE sing 273 n n O4 HO4 PGE sing 274 n n C6 C5 PGE sing 275 n n C6 H6 PGE sing 276 n n C6 H62 PGE sing 277 n n C5 O3 PGE sing 278 n n C5 H5 PGE sing 279 n n C5 H52 PGE sing 280 n n # _atom_sites.entry_id 3KHV _atom_sites.fract_transf_matrix[1][1] 0.008276 _atom_sites.fract_transf_matrix[1][2] 0.004778 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009557 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02361 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4AL A 1 4069 4069 4AL 4AL . C 3 SO4 A 1 402 402 SO4 SO4 . D 4 PGE A 1 5115 5115 PGE PGE . E 5 HOH A 1 1 1 HOH HOH . E 5 HOH A 2 2 2 HOH HOH . E 5 HOH A 3 3 3 HOH HOH . E 5 HOH A 4 4 4 HOH HOH . E 5 HOH A 5 5 5 HOH HOH . E 5 HOH A 6 6 6 HOH HOH . E 5 HOH A 7 7 7 HOH HOH . E 5 HOH A 8 8 8 HOH HOH . E 5 HOH A 9 9 9 HOH HOH . E 5 HOH A 10 10 10 HOH HOH . E 5 HOH A 11 11 11 HOH HOH . E 5 HOH A 12 12 12 HOH HOH . E 5 HOH A 13 13 13 HOH HOH . E 5 HOH A 14 14 14 HOH HOH . E 5 HOH A 15 15 15 HOH HOH . E 5 HOH A 16 218 218 HOH HOH . E 5 HOH A 17 251 251 HOH HOH . E 5 HOH A 18 252 252 HOH HOH . E 5 HOH A 19 253 253 HOH HOH . E 5 HOH A 20 254 254 HOH HOH . E 5 HOH A 21 255 255 HOH HOH . E 5 HOH A 22 256 256 HOH HOH . E 5 HOH A 23 257 257 HOH HOH . E 5 HOH A 24 258 258 HOH HOH . E 5 HOH A 25 259 259 HOH HOH . E 5 HOH A 26 260 260 HOH HOH . E 5 HOH A 27 261 261 HOH HOH . E 5 HOH A 28 262 262 HOH HOH . E 5 HOH A 29 263 263 HOH HOH . E 5 HOH A 30 264 264 HOH HOH . E 5 HOH A 31 265 265 HOH HOH . E 5 HOH A 32 266 266 HOH HOH . E 5 HOH A 33 267 267 HOH HOH . E 5 HOH A 34 268 268 HOH HOH . E 5 HOH A 35 269 269 HOH HOH . E 5 HOH A 36 270 270 HOH HOH . E 5 HOH A 37 271 271 HOH HOH . E 5 HOH A 38 272 272 HOH HOH . E 5 HOH A 39 273 273 HOH HOH . E 5 HOH A 40 274 274 HOH HOH . E 5 HOH A 41 275 275 HOH HOH . E 5 HOH A 42 276 276 HOH HOH . E 5 HOH A 43 277 277 HOH HOH . E 5 HOH A 44 278 278 HOH HOH . E 5 HOH A 45 279 279 HOH HOH . E 5 HOH A 46 280 280 HOH HOH . E 5 HOH A 47 281 281 HOH HOH . E 5 HOH A 48 282 282 HOH HOH . E 5 HOH A 49 283 283 HOH HOH . E 5 HOH A 50 284 284 HOH HOH . E 5 HOH A 51 285 285 HOH HOH . E 5 HOH A 52 286 286 HOH HOH . E 5 HOH A 53 287 287 HOH HOH . E 5 HOH A 54 288 288 HOH HOH . E 5 HOH A 55 289 289 HOH HOH . E 5 HOH A 56 290 290 HOH HOH . E 5 HOH A 57 291 291 HOH HOH . E 5 HOH A 58 292 292 HOH HOH . E 5 HOH A 59 293 293 HOH HOH . E 5 HOH A 60 294 294 HOH HOH . E 5 HOH A 61 295 295 HOH HOH . E 5 HOH A 62 296 296 HOH HOH . E 5 HOH A 63 297 297 HOH HOH . E 5 HOH A 64 298 298 HOH HOH . E 5 HOH A 65 299 299 HOH HOH . E 5 HOH A 66 300 300 HOH HOH . E 5 HOH A 67 301 301 HOH HOH . E 5 HOH A 68 302 302 HOH HOH . E 5 HOH A 69 303 303 HOH HOH . E 5 HOH A 70 304 304 HOH HOH . E 5 HOH A 71 305 305 HOH HOH . E 5 HOH A 72 306 306 HOH HOH . E 5 HOH A 73 307 307 HOH HOH . E 5 HOH A 74 308 308 HOH HOH . E 5 HOH A 75 309 309 HOH HOH . E 5 HOH A 76 310 310 HOH HOH . E 5 HOH A 77 311 311 HOH HOH . E 5 HOH A 78 312 312 HOH HOH . E 5 HOH A 79 313 313 HOH HOH . E 5 HOH A 80 314 314 HOH HOH . E 5 HOH A 81 315 315 HOH HOH . E 5 HOH A 82 316 316 HOH HOH . E 5 HOH A 83 317 317 HOH HOH . E 5 HOH A 84 318 318 HOH HOH . E 5 HOH A 85 319 319 HOH HOH . E 5 HOH A 86 320 320 HOH HOH . E 5 HOH A 87 321 321 HOH HOH . E 5 HOH A 88 322 322 HOH HOH . E 5 HOH A 89 323 323 HOH HOH . E 5 HOH A 90 324 324 HOH HOH . E 5 HOH A 91 325 325 HOH HOH . E 5 HOH A 92 326 326 HOH HOH . E 5 HOH A 93 327 327 HOH HOH . E 5 HOH A 94 328 328 HOH HOH . E 5 HOH A 95 329 329 HOH HOH . E 5 HOH A 96 330 330 HOH HOH . E 5 HOH A 97 331 331 HOH HOH . E 5 HOH A 98 332 332 HOH HOH . E 5 HOH A 99 333 333 HOH HOH . E 5 HOH A 100 334 334 HOH HOH . E 5 HOH A 101 335 335 HOH HOH . E 5 HOH A 102 336 336 HOH HOH . E 5 HOH A 103 337 337 HOH HOH . E 5 HOH A 104 338 338 HOH HOH . E 5 HOH A 105 339 339 HOH HOH . E 5 HOH A 106 340 340 HOH HOH . E 5 HOH A 107 341 341 HOH HOH . E 5 HOH A 108 342 342 HOH HOH . E 5 HOH A 109 343 343 HOH HOH . E 5 HOH A 110 344 344 HOH HOH . E 5 HOH A 111 345 345 HOH HOH . E 5 HOH A 112 346 346 HOH HOH . E 5 HOH A 113 347 347 HOH HOH . E 5 HOH A 114 348 348 HOH HOH . E 5 HOH A 115 349 349 HOH HOH . E 5 HOH A 116 350 350 HOH HOH . E 5 HOH A 117 351 351 HOH HOH . E 5 HOH A 118 352 352 HOH HOH . E 5 HOH A 119 353 353 HOH HOH . E 5 HOH A 120 354 354 HOH HOH . E 5 HOH A 121 355 355 HOH HOH . E 5 HOH A 122 356 356 HOH HOH . E 5 HOH A 123 357 357 HOH HOH . E 5 HOH A 124 358 358 HOH HOH . E 5 HOH A 125 359 359 HOH HOH . E 5 HOH A 126 360 360 HOH HOH . E 5 HOH A 127 361 361 HOH HOH . E 5 HOH A 128 362 362 HOH HOH . E 5 HOH A 129 363 363 HOH HOH . E 5 HOH A 130 364 364 HOH HOH . E 5 HOH A 131 365 365 HOH HOH . E 5 HOH A 132 366 366 HOH HOH . E 5 HOH A 133 367 367 HOH HOH . E 5 HOH A 134 368 368 HOH HOH . E 5 HOH A 135 369 369 HOH HOH . E 5 HOH A 136 370 370 HOH HOH . E 5 HOH A 137 371 371 HOH HOH . E 5 HOH A 138 372 372 HOH HOH . E 5 HOH A 139 373 373 HOH HOH . E 5 HOH A 140 374 374 HOH HOH . E 5 HOH A 141 375 375 HOH HOH . E 5 HOH A 142 376 376 HOH HOH . E 5 HOH A 143 377 377 HOH HOH . E 5 HOH A 144 378 378 HOH HOH . E 5 HOH A 145 379 379 HOH HOH . E 5 HOH A 146 380 380 HOH HOH . E 5 HOH A 147 381 381 HOH HOH . E 5 HOH A 148 382 382 HOH HOH . E 5 HOH A 149 383 383 HOH HOH . E 5 HOH A 150 384 384 HOH HOH . E 5 HOH A 151 385 385 HOH HOH . E 5 HOH A 152 386 386 HOH HOH . E 5 HOH A 153 387 387 HOH HOH . E 5 HOH A 154 388 388 HOH HOH . E 5 HOH A 155 389 389 HOH HOH . E 5 HOH A 156 390 390 HOH HOH . E 5 HOH A 157 391 391 HOH HOH . E 5 HOH A 158 392 392 HOH HOH . E 5 HOH A 159 393 393 HOH HOH . E 5 HOH A 160 394 394 HOH HOH . E 5 HOH A 161 395 395 HOH HOH . E 5 HOH A 162 396 396 HOH HOH . E 5 HOH A 163 397 397 HOH HOH . E 5 HOH A 164 398 398 HOH HOH . E 5 HOH A 165 399 399 HOH HOH . E 5 HOH A 166 400 400 HOH HOH . E 5 HOH A 167 401 401 HOH HOH . E 5 HOH A 168 403 403 HOH HOH . E 5 HOH A 169 404 404 HOH HOH . E 5 HOH A 170 405 405 HOH HOH . E 5 HOH A 171 406 406 HOH HOH . E 5 HOH A 172 407 407 HOH HOH . E 5 HOH A 173 408 408 HOH HOH . E 5 HOH A 174 409 409 HOH HOH . E 5 HOH A 175 410 410 HOH HOH . E 5 HOH A 176 411 411 HOH HOH . E 5 HOH A 177 412 412 HOH HOH . E 5 HOH A 178 413 413 HOH HOH . E 5 HOH A 179 414 414 HOH HOH . E 5 HOH A 180 415 415 HOH HOH . E 5 HOH A 181 416 416 HOH HOH . E 5 HOH A 182 417 417 HOH HOH . E 5 HOH A 183 418 418 HOH HOH . E 5 HOH A 184 419 419 HOH HOH . E 5 HOH A 185 420 420 HOH HOH . E 5 HOH A 186 421 421 HOH HOH . E 5 HOH A 187 422 422 HOH HOH . E 5 HOH A 188 423 423 HOH HOH . E 5 HOH A 189 424 424 HOH HOH . E 5 HOH A 190 425 425 HOH HOH . E 5 HOH A 191 426 426 HOH HOH . E 5 HOH A 192 427 427 HOH HOH . E 5 HOH A 193 428 428 HOH HOH . E 5 HOH A 194 429 429 HOH HOH . E 5 HOH A 195 430 430 HOH HOH . E 5 HOH A 196 431 431 HOH HOH . E 5 HOH A 197 432 432 HOH HOH . E 5 HOH A 198 433 433 HOH HOH . E 5 HOH A 199 434 434 HOH HOH . E 5 HOH A 200 435 435 HOH HOH . E 5 HOH A 201 436 436 HOH HOH . E 5 HOH A 202 437 437 HOH HOH . E 5 HOH A 203 438 438 HOH HOH . E 5 HOH A 204 439 439 HOH HOH . E 5 HOH A 205 440 440 HOH HOH . E 5 HOH A 206 441 441 HOH HOH . E 5 HOH A 207 442 442 HOH HOH . E 5 HOH A 208 443 443 HOH HOH . E 5 HOH A 209 444 444 HOH HOH . E 5 HOH A 210 445 445 HOH HOH . E 5 HOH A 211 446 446 HOH HOH . E 5 HOH A 212 447 447 HOH HOH . E 5 HOH A 213 448 448 HOH HOH . E 5 HOH A 214 449 449 HOH HOH . E 5 HOH A 215 450 450 HOH HOH . E 5 HOH A 216 451 451 HOH HOH . E 5 HOH A 217 452 452 HOH HOH . E 5 HOH A 218 453 453 HOH HOH . E 5 HOH A 219 454 454 HOH HOH . E 5 HOH A 220 455 455 HOH HOH . E 5 HOH A 221 456 456 HOH HOH . E 5 HOH A 222 457 457 HOH HOH . E 5 HOH A 223 458 458 HOH HOH . E 5 HOH A 224 459 459 HOH HOH . E 5 HOH A 225 460 460 HOH HOH . E 5 HOH A 226 461 461 HOH HOH . E 5 HOH A 227 462 462 HOH HOH . E 5 HOH A 228 463 463 HOH HOH . E 5 HOH A 229 464 464 HOH HOH . E 5 HOH A 230 465 465 HOH HOH . E 5 HOH A 231 466 466 HOH HOH . E 5 HOH A 232 467 467 HOH HOH . E 5 HOH A 233 468 468 HOH HOH . E 5 HOH A 234 469 469 HOH HOH . E 5 HOH A 235 470 470 HOH HOH . E 5 HOH A 236 471 471 HOH HOH . E 5 HOH A 237 472 472 HOH HOH . E 5 HOH A 238 473 473 HOH HOH . E 5 HOH A 239 474 474 HOH HOH . E 5 HOH A 240 475 475 HOH HOH . E 5 HOH A 241 476 476 HOH HOH . E 5 HOH A 242 477 477 HOH HOH . E 5 HOH A 243 478 478 HOH HOH . E 5 HOH A 244 479 479 HOH HOH . E 5 HOH A 245 480 480 HOH HOH . E 5 HOH A 246 481 481 HOH HOH . E 5 HOH A 247 482 482 HOH HOH . E 5 HOH A 248 483 483 HOH HOH . E 5 HOH A 249 484 484 HOH HOH . E 5 HOH A 250 485 485 HOH HOH . E 5 HOH A 251 486 486 HOH HOH . E 5 HOH A 252 487 487 HOH HOH . E 5 HOH A 253 488 488 HOH HOH . E 5 HOH A 254 489 489 HOH HOH . E 5 HOH A 255 490 490 HOH HOH . E 5 HOH A 256 491 491 HOH HOH . E 5 HOH A 257 492 492 HOH HOH . E 5 HOH A 258 493 493 HOH HOH . E 5 HOH A 259 494 494 HOH HOH . E 5 HOH A 260 495 495 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . D 4 -43.468 98.223 -14.478 1 29.89 ? C1 PGE 5115 A 1 HETATM 2 O O1 PGE . . . D 4 -44.634 99.143 -14.515 1 37.8 ? O1 PGE 5115 A 1 HETATM 3 C C2 PGE . . . D 4 -43.275 97.823 -13.043 1 35.09 ? C2 PGE 5115 A 1 HETATM 4 O O2 PGE . . . D 4 -43.332 97.636 -11.649 1 43.93 ? O2 PGE 5115 A 1 HETATM 5 C C3 PGE . . . D 4 -42.372 96.743 -11.206 1 40.04 ? C3 PGE 5115 A 1 HETATM 6 C C4 PGE . . . D 4 -42.549 96.627 -9.689 1 38.87 ? C4 PGE 5115 A 1 HETATM 7 O O4 PGE . . . D 4 -46.235 97.669 -8.016 1 49.88 ? O4 PGE 5115 A 1 HETATM 8 C C6 PGE . . . D 4 -45.724 96.4 -7.694 1 47.14 ? C6 PGE 5115 A 1 HETATM 9 C C5 PGE . . . D 4 -44.229 96.472 -7.97 1 48.05 ? C5 PGE 5115 A 1 HETATM 10 O O3 PGE . . . D 4 -43.987 96.53 -9.399 1 47.18 ? O3 PGE 5115 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #