data_3KI4
#
_model_server_result.job_id            HgT8Kz1_E-x7gp25-hddUQ 
_model_server_result.datetime_utc      '2024-10-12 23:24:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ki4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":635}' 
#
_entry.id    3KI4 
#
_exptl.entry_id    3KI4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3KI4 
_cell.length_a            35.525 
_cell.length_b            64.685 
_cell.length_c            84.226 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KI4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 152 n n 
C1 C2 GOL sing 153 n n 
C1 H11 GOL sing 154 n n 
C1 H12 GOL sing 155 n n 
O1 HO1 GOL sing 156 n n 
C2 O2 GOL sing 157 n n 
C2 C3 GOL sing 158 n n 
C2 H2 GOL sing 159 n n 
O2 HO2 GOL sing 160 n n 
C3 O3 GOL sing 161 n n 
C3 H31 GOL sing 162 n n 
C3 H32 GOL sing 163 n n 
O3 HO3 GOL sing 164 n n 
#
_atom_sites.entry_id                     3KI4 
_atom_sites.fract_transf_matrix[1][1]    0.028149 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01546 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011873 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 G9P A 1 1 1 G9P G9P . 
C 3 GOL A 1 3968 3968 GOL GOL . 
D 3 GOL A 1 635 3968 GOL GOL . 
E 4 HOH A 1 2 2 HOH HOH . 
E 4 HOH A 2 3 3 HOH HOH . 
E 4 HOH A 3 4 4 HOH HOH . 
E 4 HOH A 4 5 5 HOH HOH . 
E 4 HOH A 5 6 6 HOH HOH . 
E 4 HOH A 6 7 7 HOH HOH . 
E 4 HOH A 7 8 8 HOH HOH . 
E 4 HOH A 8 9 9 HOH HOH . 
E 4 HOH A 9 10 10 HOH HOH . 
E 4 HOH A 10 11 11 HOH HOH . 
E 4 HOH A 11 12 12 HOH HOH . 
E 4 HOH A 12 13 13 HOH HOH . 
E 4 HOH A 13 14 14 HOH HOH . 
E 4 HOH A 14 15 15 HOH HOH . 
E 4 HOH A 15 16 16 HOH HOH . 
E 4 HOH A 16 17 17 HOH HOH . 
E 4 HOH A 17 18 18 HOH HOH . 
E 4 HOH A 18 19 19 HOH HOH . 
E 4 HOH A 19 20 20 HOH HOH . 
E 4 HOH A 20 21 21 HOH HOH . 
E 4 HOH A 21 22 22 HOH HOH . 
E 4 HOH A 22 23 23 HOH HOH . 
E 4 HOH A 23 24 24 HOH HOH . 
E 4 HOH A 24 25 25 HOH HOH . 
E 4 HOH A 25 26 26 HOH HOH . 
E 4 HOH A 26 27 27 HOH HOH . 
E 4 HOH A 27 28 28 HOH HOH . 
E 4 HOH A 28 29 29 HOH HOH . 
E 4 HOH A 29 30 30 HOH HOH . 
E 4 HOH A 30 32 32 HOH HOH . 
E 4 HOH A 31 33 33 HOH HOH . 
E 4 HOH A 32 34 34 HOH HOH . 
E 4 HOH A 33 35 35 HOH HOH . 
E 4 HOH A 34 36 36 HOH HOH . 
E 4 HOH A 35 37 37 HOH HOH . 
E 4 HOH A 36 38 38 HOH HOH . 
E 4 HOH A 37 39 39 HOH HOH . 
E 4 HOH A 38 40 40 HOH HOH . 
E 4 HOH A 39 41 41 HOH HOH . 
E 4 HOH A 40 42 42 HOH HOH . 
E 4 HOH A 41 43 43 HOH HOH . 
E 4 HOH A 42 44 44 HOH HOH . 
E 4 HOH A 43 45 45 HOH HOH . 
E 4 HOH A 44 46 46 HOH HOH . 
E 4 HOH A 45 47 47 HOH HOH . 
E 4 HOH A 46 48 48 HOH HOH . 
E 4 HOH A 47 49 49 HOH HOH . 
E 4 HOH A 48 50 50 HOH HOH . 
E 4 HOH A 49 51 51 HOH HOH . 
E 4 HOH A 50 52 52 HOH HOH . 
E 4 HOH A 51 53 53 HOH HOH . 
E 4 HOH A 52 54 54 HOH HOH . 
E 4 HOH A 53 55 55 HOH HOH . 
E 4 HOH A 54 56 56 HOH HOH . 
E 4 HOH A 55 57 57 HOH HOH . 
E 4 HOH A 56 58 58 HOH HOH . 
E 4 HOH A 57 59 59 HOH HOH . 
E 4 HOH A 58 60 60 HOH HOH . 
E 4 HOH A 59 61 61 HOH HOH . 
E 4 HOH A 60 62 62 HOH HOH . 
E 4 HOH A 61 63 63 HOH HOH . 
E 4 HOH A 62 64 64 HOH HOH . 
E 4 HOH A 63 65 65 HOH HOH . 
E 4 HOH A 64 66 66 HOH HOH . 
E 4 HOH A 65 67 67 HOH HOH . 
E 4 HOH A 66 68 68 HOH HOH . 
E 4 HOH A 67 69 69 HOH HOH . 
E 4 HOH A 68 70 70 HOH HOH . 
E 4 HOH A 69 71 71 HOH HOH . 
E 4 HOH A 70 72 72 HOH HOH . 
E 4 HOH A 71 73 73 HOH HOH . 
E 4 HOH A 72 75 75 HOH HOH . 
E 4 HOH A 73 76 76 HOH HOH . 
E 4 HOH A 74 77 77 HOH HOH . 
E 4 HOH A 75 78 78 HOH HOH . 
E 4 HOH A 76 79 79 HOH HOH . 
E 4 HOH A 77 80 80 HOH HOH . 
E 4 HOH A 78 81 81 HOH HOH . 
E 4 HOH A 79 83 83 HOH HOH . 
E 4 HOH A 80 84 84 HOH HOH . 
E 4 HOH A 81 85 85 HOH HOH . 
E 4 HOH A 82 86 86 HOH HOH . 
E 4 HOH A 83 87 87 HOH HOH . 
E 4 HOH A 84 88 88 HOH HOH . 
E 4 HOH A 85 89 89 HOH HOH . 
E 4 HOH A 86 90 90 HOH HOH . 
E 4 HOH A 87 91 91 HOH HOH . 
E 4 HOH A 88 92 92 HOH HOH . 
E 4 HOH A 89 93 93 HOH HOH . 
E 4 HOH A 90 94 94 HOH HOH . 
E 4 HOH A 91 95 95 HOH HOH . 
E 4 HOH A 92 96 96 HOH HOH . 
E 4 HOH A 93 97 97 HOH HOH . 
E 4 HOH A 94 98 98 HOH HOH . 
E 4 HOH A 95 99 99 HOH HOH . 
E 4 HOH A 96 100 100 HOH HOH . 
E 4 HOH A 97 101 101 HOH HOH . 
E 4 HOH A 98 102 102 HOH HOH . 
E 4 HOH A 99 103 103 HOH HOH . 
E 4 HOH A 100 104 104 HOH HOH . 
E 4 HOH A 101 105 105 HOH HOH . 
E 4 HOH A 102 106 106 HOH HOH . 
E 4 HOH A 103 108 108 HOH HOH . 
E 4 HOH A 104 109 109 HOH HOH . 
E 4 HOH A 105 110 110 HOH HOH . 
E 4 HOH A 106 111 111 HOH HOH . 
E 4 HOH A 107 112 112 HOH HOH . 
E 4 HOH A 108 113 113 HOH HOH . 
E 4 HOH A 109 114 114 HOH HOH . 
E 4 HOH A 110 115 115 HOH HOH . 
E 4 HOH A 111 116 116 HOH HOH . 
E 4 HOH A 112 117 117 HOH HOH . 
E 4 HOH A 113 118 118 HOH HOH . 
E 4 HOH A 114 119 119 HOH HOH . 
E 4 HOH A 115 120 120 HOH HOH . 
E 4 HOH A 116 121 121 HOH HOH . 
E 4 HOH A 117 122 122 HOH HOH . 
E 4 HOH A 118 123 123 HOH HOH . 
E 4 HOH A 119 124 124 HOH HOH . 
E 4 HOH A 120 125 125 HOH HOH . 
E 4 HOH A 121 126 126 HOH HOH . 
E 4 HOH A 122 127 127 HOH HOH . 
E 4 HOH A 123 128 128 HOH HOH . 
E 4 HOH A 124 129 129 HOH HOH . 
E 4 HOH A 125 130 130 HOH HOH . 
E 4 HOH A 126 131 131 HOH HOH . 
E 4 HOH A 127 132 132 HOH HOH . 
E 4 HOH A 128 133 133 HOH HOH . 
E 4 HOH A 129 134 134 HOH HOH . 
E 4 HOH A 130 135 135 HOH HOH . 
E 4 HOH A 131 136 136 HOH HOH . 
E 4 HOH A 132 137 137 HOH HOH . 
E 4 HOH A 133 138 138 HOH HOH . 
E 4 HOH A 134 139 139 HOH HOH . 
E 4 HOH A 135 141 141 HOH HOH . 
E 4 HOH A 136 142 142 HOH HOH . 
E 4 HOH A 137 143 143 HOH HOH . 
E 4 HOH A 138 144 144 HOH HOH . 
E 4 HOH A 139 145 145 HOH HOH . 
E 4 HOH A 140 146 146 HOH HOH . 
E 4 HOH A 141 147 147 HOH HOH . 
E 4 HOH A 142 148 148 HOH HOH . 
E 4 HOH A 143 149 149 HOH HOH . 
E 4 HOH A 144 150 150 HOH HOH . 
E 4 HOH A 145 151 151 HOH HOH . 
E 4 HOH A 146 152 152 HOH HOH . 
E 4 HOH A 147 153 153 HOH HOH . 
E 4 HOH A 148 154 154 HOH HOH . 
E 4 HOH A 149 155 155 HOH HOH . 
E 4 HOH A 150 156 156 HOH HOH . 
E 4 HOH A 151 157 157 HOH HOH . 
E 4 HOH A 152 158 158 HOH HOH . 
E 4 HOH A 153 159 159 HOH HOH . 
E 4 HOH A 154 160 160 HOH HOH . 
E 4 HOH A 155 162 162 HOH HOH . 
E 4 HOH A 156 163 163 HOH HOH . 
E 4 HOH A 157 166 166 HOH HOH . 
E 4 HOH A 158 167 167 HOH HOH . 
E 4 HOH A 159 168 168 HOH HOH . 
E 4 HOH A 160 169 169 HOH HOH . 
E 4 HOH A 161 170 170 HOH HOH . 
E 4 HOH A 162 171 171 HOH HOH . 
E 4 HOH A 163 172 172 HOH HOH . 
E 4 HOH A 164 173 173 HOH HOH . 
E 4 HOH A 165 174 174 HOH HOH . 
E 4 HOH A 166 175 175 HOH HOH . 
E 4 HOH A 167 176 176 HOH HOH . 
E 4 HOH A 168 177 177 HOH HOH . 
E 4 HOH A 169 178 178 HOH HOH . 
E 4 HOH A 170 179 179 HOH HOH . 
E 4 HOH A 171 180 180 HOH HOH . 
E 4 HOH A 172 181 181 HOH HOH . 
E 4 HOH A 173 183 183 HOH HOH . 
E 4 HOH A 174 184 184 HOH HOH . 
E 4 HOH A 175 185 185 HOH HOH . 
E 4 HOH A 176 186 186 HOH HOH . 
E 4 HOH A 177 187 187 HOH HOH . 
E 4 HOH A 178 188 188 HOH HOH . 
E 4 HOH A 179 189 189 HOH HOH . 
E 4 HOH A 180 190 190 HOH HOH . 
E 4 HOH A 181 191 191 HOH HOH . 
E 4 HOH A 182 192 192 HOH HOH . 
E 4 HOH A 183 193 193 HOH HOH . 
E 4 HOH A 184 194 194 HOH HOH . 
E 4 HOH A 185 195 195 HOH HOH . 
E 4 HOH A 186 196 196 HOH HOH . 
E 4 HOH A 187 197 197 HOH HOH . 
E 4 HOH A 188 198 198 HOH HOH . 
E 4 HOH A 189 200 200 HOH HOH . 
E 4 HOH A 190 201 201 HOH HOH . 
E 4 HOH A 191 202 202 HOH HOH . 
E 4 HOH A 192 203 203 HOH HOH . 
E 4 HOH A 193 204 204 HOH HOH . 
E 4 HOH A 194 205 205 HOH HOH . 
E 4 HOH A 195 206 206 HOH HOH . 
E 4 HOH A 196 208 208 HOH HOH . 
E 4 HOH A 197 209 209 HOH HOH . 
E 4 HOH A 198 210 210 HOH HOH . 
E 4 HOH A 199 211 211 HOH HOH . 
E 4 HOH A 200 212 212 HOH HOH . 
E 4 HOH A 201 213 213 HOH HOH . 
E 4 HOH A 202 214 214 HOH HOH . 
E 4 HOH A 203 215 215 HOH HOH . 
E 4 HOH A 204 216 216 HOH HOH . 
E 4 HOH A 205 218 218 HOH HOH . 
E 4 HOH A 206 219 219 HOH HOH . 
E 4 HOH A 207 221 221 HOH HOH . 
E 4 HOH A 208 222 222 HOH HOH . 
E 4 HOH A 209 223 223 HOH HOH . 
E 4 HOH A 210 224 224 HOH HOH . 
E 4 HOH A 211 225 225 HOH HOH . 
E 4 HOH A 212 226 226 HOH HOH . 
E 4 HOH A 213 229 229 HOH HOH . 
E 4 HOH A 214 231 231 HOH HOH . 
E 4 HOH A 215 232 232 HOH HOH . 
E 4 HOH A 216 233 233 HOH HOH . 
E 4 HOH A 217 234 234 HOH HOH . 
E 4 HOH A 218 237 237 HOH HOH . 
E 4 HOH A 219 239 239 HOH HOH . 
E 4 HOH A 220 240 240 HOH HOH . 
E 4 HOH A 221 241 241 HOH HOH . 
E 4 HOH A 222 242 242 HOH HOH . 
E 4 HOH A 223 243 243 HOH HOH . 
E 4 HOH A 224 245 245 HOH HOH . 
E 4 HOH A 225 246 246 HOH HOH . 
E 4 HOH A 226 247 247 HOH HOH . 
E 4 HOH A 227 248 248 HOH HOH . 
E 4 HOH A 228 249 249 HOH HOH . 
E 4 HOH A 229 250 250 HOH HOH . 
E 4 HOH A 230 251 251 HOH HOH . 
E 4 HOH A 231 252 252 HOH HOH . 
E 4 HOH A 232 253 253 HOH HOH . 
E 4 HOH A 233 255 255 HOH HOH . 
E 4 HOH A 234 256 256 HOH HOH . 
E 4 HOH A 235 257 257 HOH HOH . 
E 4 HOH A 236 258 258 HOH HOH . 
E 4 HOH A 237 259 259 HOH HOH . 
E 4 HOH A 238 260 260 HOH HOH . 
E 4 HOH A 239 261 261 HOH HOH . 
E 4 HOH A 240 262 262 HOH HOH . 
E 4 HOH A 241 263 263 HOH HOH . 
E 4 HOH A 242 265 265 HOH HOH . 
E 4 HOH A 243 266 266 HOH HOH . 
E 4 HOH A 244 267 267 HOH HOH . 
E 4 HOH A 245 268 268 HOH HOH . 
E 4 HOH A 246 269 269 HOH HOH . 
E 4 HOH A 247 270 270 HOH HOH . 
E 4 HOH A 248 271 271 HOH HOH . 
E 4 HOH A 249 272 272 HOH HOH . 
E 4 HOH A 250 273 273 HOH HOH . 
E 4 HOH A 251 274 274 HOH HOH . 
E 4 HOH A 252 275 275 HOH HOH . 
E 4 HOH A 253 276 276 HOH HOH . 
E 4 HOH A 254 277 277 HOH HOH . 
E 4 HOH A 255 278 278 HOH HOH . 
E 4 HOH A 256 279 279 HOH HOH . 
E 4 HOH A 257 280 280 HOH HOH . 
E 4 HOH A 258 281 281 HOH HOH . 
E 4 HOH A 259 282 282 HOH HOH . 
E 4 HOH A 260 283 283 HOH HOH . 
E 4 HOH A 261 284 284 HOH HOH . 
E 4 HOH A 262 285 285 HOH HOH . 
E 4 HOH A 263 286 286 HOH HOH . 
E 4 HOH A 264 287 287 HOH HOH . 
E 4 HOH A 265 288 288 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 -6.285 -9.657 -16.841 1 21.89 ? C1 GOL 635 A 1 
HETATM 2 O O1 GOL . . . D 3 -5.438 -8.591 -16.424 1 15.39 ? O1 GOL 635 A 1 
HETATM 3 C C2 GOL . . . D 3 -6.533 -9.684 -18.352 1 26.28 ? C2 GOL 635 A 1 
HETATM 4 O O2 GOL . . . D 3 -5.339 -9.702 -19.154 1 26.1 ? O2 GOL 635 A 1 
HETATM 5 C C3 GOL . . . D 3 -7.439 -8.533 -18.75 1 25.38 ? C3 GOL 635 A 1 
HETATM 6 O O3 GOL . . . D 3 -7.928 -8.814 -20.061 1 31.17 ? O3 GOL 635 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#