data_3KI9 # _model_server_result.job_id dYgqDGPc3_HvfJgcm32Iiw _model_server_result.datetime_utc '2024-10-18 19:34:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ki9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":470}' # _entry.id 3KI9 # _exptl.entry_id 3KI9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KI9 _cell.length_a 158.15 _cell.length_b 158.15 _cell.length_c 158.15 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KI9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 107 A HIS 84 1_555 C MN MN . A MN 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc2 A OD1 ASP 138 A ASP 115 1_555 B MN MN . A MN 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc3 A OD2 ASP 138 A ASP 115 1_555 C MN MN . A MN 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc4 A OE2 GLU 173 A GLU 150 1_555 B MN MN . A MN 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc5 A OE1 GLU 173 A GLU 150 1_555 B MN MN . A MN 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc6 A OD2 ASP 196 A ASP 173 1_555 C MN MN . A MN 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc7 A OD1 ASP 196 A ASP 173 1_555 C MN MN . A MN 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc8 A NE2 HIS 463 A HIS 440 1_555 B MN MN . A MN 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc9 B MN MN . A MN 470 1_555 D O2 PO4 . A PO4 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3KI9 _atom_sites.fract_transf_matrix[1][1] 0.006323 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006323 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006323 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 470 470 MN MN . C 2 MN A 1 471 471 MN MN . D 3 PO4 A 1 472 472 PO4 PO4 . E 4 HOH A 1 473 473 HOH HOH . E 4 HOH A 2 474 474 HOH HOH . E 4 HOH A 3 475 475 HOH HOH . E 4 HOH A 4 476 476 HOH HOH . E 4 HOH A 5 477 477 HOH HOH . E 4 HOH A 6 478 478 HOH HOH . E 4 HOH A 7 479 479 HOH HOH . E 4 HOH A 8 480 480 HOH HOH . E 4 HOH A 9 481 481 HOH HOH . E 4 HOH A 10 482 482 HOH HOH . E 4 HOH A 11 483 483 HOH HOH . E 4 HOH A 12 484 484 HOH HOH . E 4 HOH A 13 485 485 HOH HOH . E 4 HOH A 14 486 486 HOH HOH . E 4 HOH A 15 487 487 HOH HOH . E 4 HOH A 16 488 488 HOH HOH . E 4 HOH A 17 489 489 HOH HOH . E 4 HOH A 18 490 490 HOH HOH . E 4 HOH A 19 491 491 HOH HOH . E 4 HOH A 20 492 492 HOH HOH . E 4 HOH A 21 493 493 HOH HOH . E 4 HOH A 22 494 494 HOH HOH . E 4 HOH A 23 495 495 HOH HOH . E 4 HOH A 24 496 496 HOH HOH . E 4 HOH A 25 497 497 HOH HOH . E 4 HOH A 26 498 498 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 51.008 _atom_site.Cartn_y -41.448 _atom_site.Cartn_z 10.636 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.31 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 470 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #