data_3KIA
#
_model_server_result.job_id            8-QavfK0YuFDfTd0HyGoxw 
_model_server_result.datetime_utc      '2025-01-09 12:41:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kia 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":336}' 
#
_entry.id    3KIA 
#
_exptl.entry_id    3KIA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              363.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3KIA 
_cell.length_a            109.01 
_cell.length_b            109.01 
_cell.length_c            313.418 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KIA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 189 A ASP 137 1_555 G MG MG . A MG 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.975 ? 
metalc ? metalc2 A O GLN 351 A GLN 299 1_555 F MG MG . A MG 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc3 A O ASP 354 A ASP 302 1_555 F MG MG . A MG 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc4 C O3P 5GP . A 5GP 336 1_555 G MG MG . A MG 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? 
metalc ? metalc5 F MG MG . A MG 339 1_555 K O HOH . A HOH 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc6 F MG MG . A MG 339 1_555 K O HOH . A HOH 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc7 F MG MG . A MG 339 1_555 K O HOH . A HOH 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc8 F MG MG . A MG 339 1_555 L O HOH . C HOH 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc9 H O2P 5GP . C 5GP 336 1_555 J MG MG . C MG 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? 
#
_chem_comp.formula           'C10 H14 N5 O8 P' 
_chem_comp.formula_weight    363.221 
_chem_comp.id                5GP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "GUANOSINE-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P 5GP doub 1 n n 
P O2P 5GP sing 2 n n 
P O3P 5GP sing 3 n n 
P O5' 5GP sing 4 n n 
O2P HOP2 5GP sing 5 n n 
O3P HOP3 5GP sing 6 n n 
O5' C5' 5GP sing 7 n n 
C5' C4' 5GP sing 8 n n 
C5' "H5'1" 5GP sing 9 n n 
C5' "H5'2" 5GP sing 10 n n 
C4' O4' 5GP sing 11 n n 
C4' C3' 5GP sing 12 n n 
C4' H4' 5GP sing 13 n n 
O4' C1' 5GP sing 14 n n 
C3' O3' 5GP sing 15 n n 
C3' C2' 5GP sing 16 n n 
C3' H3' 5GP sing 17 n n 
O3' HO3' 5GP sing 18 n n 
C2' O2' 5GP sing 19 n n 
C2' C1' 5GP sing 20 n n 
C2' H2' 5GP sing 21 n n 
O2' HO2' 5GP sing 22 n n 
C1' N9 5GP sing 23 n n 
C1' H1' 5GP sing 24 n n 
N9 C8 5GP sing 25 n y 
N9 C4 5GP sing 26 n y 
C8 N7 5GP doub 27 n y 
C8 H8 5GP sing 28 n n 
N7 C5 5GP sing 29 n y 
C5 C6 5GP sing 30 n n 
C5 C4 5GP doub 31 n y 
C6 O6 5GP doub 32 n n 
C6 N1 5GP sing 33 n n 
N1 C2 5GP sing 34 n n 
N1 HN1 5GP sing 35 n n 
C2 N2 5GP sing 36 n n 
C2 N3 5GP doub 37 n n 
N2 HN21 5GP sing 38 n n 
N2 HN22 5GP sing 39 n n 
N3 C4 5GP sing 40 n n 
#
_atom_sites.entry_id                     3KIA 
_atom_sites.fract_transf_matrix[1][1]    0.009173 
_atom_sites.fract_transf_matrix[1][2]    0.005296 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010593 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003191 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 5GP A 1 336 336 5GP 5GP . 
D 3 CL A 1 337 337 CL CL . 
E 3 CL A 1 338 338 CL CL . 
F 4 MG A 1 339 339 MG MG . 
G 4 MG A 1 340 340 MG MG . 
H 2 5GP C 1 336 336 5GP 5GP . 
I 3 CL C 1 337 337 CL CL . 
J 4 MG C 1 338 338 MG MG . 
K 5 HOH A 1 341 1 HOH HOH . 
K 5 HOH A 2 342 2 HOH HOH . 
K 5 HOH A 3 343 3 HOH HOH . 
K 5 HOH A 4 344 4 HOH HOH . 
K 5 HOH A 5 345 5 HOH HOH . 
K 5 HOH A 6 346 6 HOH HOH . 
K 5 HOH A 7 347 7 HOH HOH . 
K 5 HOH A 8 348 8 HOH HOH . 
K 5 HOH A 9 349 9 HOH HOH . 
K 5 HOH A 10 350 10 HOH HOH . 
K 5 HOH A 11 351 11 HOH HOH . 
K 5 HOH A 12 352 12 HOH HOH . 
K 5 HOH A 13 353 13 HOH HOH . 
K 5 HOH A 14 354 14 HOH HOH . 
K 5 HOH A 15 355 15 HOH HOH . 
K 5 HOH A 16 356 16 HOH HOH . 
K 5 HOH A 17 357 17 HOH HOH . 
K 5 HOH A 18 358 18 HOH HOH . 
K 5 HOH A 19 359 19 HOH HOH . 
K 5 HOH A 20 360 20 HOH HOH . 
K 5 HOH A 21 361 21 HOH HOH . 
K 5 HOH A 22 362 22 HOH HOH . 
K 5 HOH A 23 363 23 HOH HOH . 
K 5 HOH A 24 364 24 HOH HOH . 
K 5 HOH A 25 365 25 HOH HOH . 
K 5 HOH A 26 366 26 HOH HOH . 
K 5 HOH A 27 367 27 HOH HOH . 
K 5 HOH A 28 368 28 HOH HOH . 
K 5 HOH A 29 369 29 HOH HOH . 
K 5 HOH A 30 370 30 HOH HOH . 
K 5 HOH A 31 371 31 HOH HOH . 
K 5 HOH A 32 372 32 HOH HOH . 
K 5 HOH A 33 373 33 HOH HOH . 
K 5 HOH A 34 374 34 HOH HOH . 
K 5 HOH A 35 375 35 HOH HOH . 
K 5 HOH A 36 376 36 HOH HOH . 
K 5 HOH A 37 377 37 HOH HOH . 
K 5 HOH A 38 378 38 HOH HOH . 
K 5 HOH A 39 380 40 HOH HOH . 
K 5 HOH A 40 381 41 HOH HOH . 
K 5 HOH A 41 382 42 HOH HOH . 
K 5 HOH A 42 383 43 HOH HOH . 
K 5 HOH A 43 384 44 HOH HOH . 
K 5 HOH A 44 385 45 HOH HOH . 
K 5 HOH A 45 386 46 HOH HOH . 
K 5 HOH A 46 387 47 HOH HOH . 
K 5 HOH A 47 388 48 HOH HOH . 
K 5 HOH A 48 389 49 HOH HOH . 
K 5 HOH A 49 390 50 HOH HOH . 
K 5 HOH A 50 391 51 HOH HOH . 
K 5 HOH A 51 392 52 HOH HOH . 
K 5 HOH A 52 393 53 HOH HOH . 
K 5 HOH A 53 394 106 HOH HOH . 
L 5 HOH C 1 339 54 HOH HOH . 
L 5 HOH C 2 340 55 HOH HOH . 
L 5 HOH C 3 341 56 HOH HOH . 
L 5 HOH C 4 342 57 HOH HOH . 
L 5 HOH C 5 343 58 HOH HOH . 
L 5 HOH C 6 344 59 HOH HOH . 
L 5 HOH C 7 345 60 HOH HOH . 
L 5 HOH C 8 346 61 HOH HOH . 
L 5 HOH C 9 347 62 HOH HOH . 
L 5 HOH C 10 348 63 HOH HOH . 
L 5 HOH C 11 349 64 HOH HOH . 
L 5 HOH C 12 350 65 HOH HOH . 
L 5 HOH C 13 351 66 HOH HOH . 
L 5 HOH C 14 352 67 HOH HOH . 
L 5 HOH C 15 353 68 HOH HOH . 
L 5 HOH C 16 354 69 HOH HOH . 
L 5 HOH C 17 355 70 HOH HOH . 
L 5 HOH C 18 356 71 HOH HOH . 
L 5 HOH C 19 357 72 HOH HOH . 
L 5 HOH C 20 358 73 HOH HOH . 
L 5 HOH C 21 359 74 HOH HOH . 
L 5 HOH C 22 360 75 HOH HOH . 
L 5 HOH C 23 361 76 HOH HOH . 
L 5 HOH C 24 362 77 HOH HOH . 
L 5 HOH C 25 363 78 HOH HOH . 
L 5 HOH C 26 364 79 HOH HOH . 
L 5 HOH C 27 365 80 HOH HOH . 
L 5 HOH C 28 366 81 HOH HOH . 
L 5 HOH C 29 367 82 HOH HOH . 
L 5 HOH C 30 368 83 HOH HOH . 
L 5 HOH C 31 369 84 HOH HOH . 
L 5 HOH C 32 370 85 HOH HOH . 
L 5 HOH C 33 371 86 HOH HOH . 
L 5 HOH C 34 372 87 HOH HOH . 
L 5 HOH C 35 373 88 HOH HOH . 
L 5 HOH C 36 374 89 HOH HOH . 
L 5 HOH C 37 375 90 HOH HOH . 
L 5 HOH C 38 376 91 HOH HOH . 
L 5 HOH C 39 377 92 HOH HOH . 
L 5 HOH C 40 378 93 HOH HOH . 
L 5 HOH C 41 379 39 HOH HOH . 
L 5 HOH C 42 380 95 HOH HOH . 
L 5 HOH C 43 381 96 HOH HOH . 
L 5 HOH C 44 382 97 HOH HOH . 
L 5 HOH C 45 383 98 HOH HOH . 
L 5 HOH C 46 384 99 HOH HOH . 
L 5 HOH C 47 385 100 HOH HOH . 
L 5 HOH C 48 386 101 HOH HOH . 
L 5 HOH C 49 387 102 HOH HOH . 
L 5 HOH C 50 388 103 HOH HOH . 
L 5 HOH C 51 389 104 HOH HOH . 
L 5 HOH C 52 390 105 HOH HOH . 
L 5 HOH C 53 391 94 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 5GP . . . C 2 42.099 -22.987 -4.814 1 39.89 ? P 5GP 336 A 1 
HETATM 2 O O1P 5GP . . . C 2 40.994 -23.202 -5.883 1 39.89 ? O1P 5GP 336 A 1 
HETATM 3 O O2P 5GP . . . C 2 42.736 -24.333 -4.423 1 39.89 ? O2P 5GP 336 A 1 
HETATM 4 O O3P 5GP . . . C 2 41.521 -22.301 -3.566 1 39.89 ? O3P 5GP 336 A 1 
HETATM 5 O O5' 5GP . . . C 2 43.269 -22.031 -5.329 1 39.89 ? O5' 5GP 336 A 1 
HETATM 6 C C5' 5GP . . . C 2 44.639 -22.371 -5.144 1 39.89 ? C5' 5GP 336 A 1 
HETATM 7 C C4' 5GP . . . C 2 45.512 -21.777 -6.228 1 39.89 ? C4' 5GP 336 A 1 
HETATM 8 O O4' 5GP . . . C 2 45.682 -22.752 -7.298 1 39.89 ? O4' 5GP 336 A 1 
HETATM 9 C C3' 5GP . . . C 2 44.955 -20.526 -6.901 1 39.89 ? C3' 5GP 336 A 1 
HETATM 10 O O3' 5GP . . . C 2 46.039 -19.694 -7.308 1 39.89 ? O3' 5GP 336 A 1 
HETATM 11 C C2' 5GP . . . C 2 44.291 -21.097 -8.11 1 39.89 ? C2' 5GP 336 A 1 
HETATM 12 O O2' 5GP . . . C 2 43.934 -20.273 -9.146 1 39.89 ? O2' 5GP 336 A 1 
HETATM 13 C C1' 5GP . . . C 2 45.077 -22.273 -8.445 1 39.89 ? C1' 5GP 336 A 1 
HETATM 14 N N9 5GP . . . C 2 44.46 -23.314 -9.209 1 39.89 ? N9 5GP 336 A 1 
HETATM 15 C C8 5GP . . . C 2 43.324 -23.888 -8.917 1 39.89 ? C8 5GP 336 A 1 
HETATM 16 N N7 5GP . . . C 2 43.001 -24.842 -9.793 1 39.89 ? N7 5GP 336 A 1 
HETATM 17 C C5 5GP . . . C 2 44.031 -24.834 -10.668 1 39.89 ? C5 5GP 336 A 1 
HETATM 18 C C6 5GP . . . C 2 44.26 -25.638 -11.851 1 39.89 ? C6 5GP 336 A 1 
HETATM 19 O O6 5GP . . . C 2 43.468 -26.489 -12.201 1 39.89 ? O6 5GP 336 A 1 
HETATM 20 N N1 5GP . . . C 2 45.47 -25.411 -12.614 1 39.89 ? N1 5GP 336 A 1 
HETATM 21 C C2 5GP . . . C 2 46.419 -24.359 -12.163 1 39.89 ? C2 5GP 336 A 1 
HETATM 22 N N2 5GP . . . C 2 47.632 -24.125 -12.922 1 39.89 ? N2 5GP 336 A 1 
HETATM 23 N N3 5GP . . . C 2 46.141 -23.652 -11.054 1 39.89 ? N3 5GP 336 A 1 
HETATM 24 C C4 5GP . . . C 2 44.948 -23.937 -10.362 1 39.89 ? C4 5GP 336 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           24 
#