data_3KIH # _model_server_result.job_id dD8khnzT6hG4rvLi9gc7wA _model_server_result.datetime_utc '2024-10-15 12:25:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kih # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":98}' # _entry.id 3KIH # _exptl.entry_id 3KIH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 219.192 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(acetylamido)-2-deoxy-D-glucono-1,5-lactone _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 122.9 _cell.angle_gamma 90 _cell.entry_id 3KIH _cell.length_a 125.566 _cell.length_b 56.418 _cell.length_c 86.306 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KIH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # _chem_comp.formula 'C8 H13 N O6' _chem_comp.formula_weight 219.192 _chem_comp.id GDL _chem_comp.mon_nstd_flag . _chem_comp.name 2-(acetylamido)-2-deoxy-D-glucono-1,5-lactone _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 2-ACETAMIDO-2-DEOXY-D-GLUCONO-1,5-LACTONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GDL sing 70 n n C1 O1 GDL doub 71 n n C1 O5 GDL sing 72 n n C2 C3 GDL sing 73 n n C2 N2 GDL sing 74 n n C2 H2 GDL sing 75 n n C3 C4 GDL sing 76 n n C3 O3 GDL sing 77 n n C3 H3 GDL sing 78 n n C4 C5 GDL sing 79 n n C4 O4 GDL sing 80 n n C4 H4 GDL sing 81 n n C5 C6 GDL sing 82 n n C5 O5 GDL sing 83 n n C5 H5 GDL sing 84 n n C6 O6 GDL sing 85 n n C6 H61 GDL sing 86 n n C6 H62 GDL sing 87 n n C7 C8 GDL sing 88 n n C7 N2 GDL sing 89 n n C7 O7 GDL doub 90 n n C8 H81 GDL sing 91 n n C8 H82 GDL sing 92 n n C8 H83 GDL sing 93 n n N2 HN2 GDL sing 94 n n O3 HO3 GDL sing 95 n n O4 HO4 GDL sing 96 n n O6 HO6 GDL sing 97 n n # _atom_sites.entry_id 3KIH _atom_sites.fract_transf_matrix[1][1] 0.007964 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005152 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 GDL A 1 98 98 GDL NDG . G 2 GDL B 1 98 98 GDL NDG . H 2 GDL C 1 98 98 GDL NDG . I 2 GDL D 1 98 98 GDL NDG . J 3 HOH B 1 99 3 HOH HOH . J 3 HOH B 2 100 7 HOH HOH . J 3 HOH B 3 101 8 HOH HOH . K 3 HOH D 1 99 2 HOH HOH . K 3 HOH D 2 100 4 HOH HOH . K 3 HOH D 3 101 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GDL . . . G 2 -6.1 -5.683 29.648 1 39.55 ? C1 GDL 98 B 1 HETATM 2 C C2 GDL . . . G 2 -5.692 -7.03 30.178 1 39.26 ? C2 GDL 98 B 1 HETATM 3 C C3 GDL . . . G 2 -6.448 -7.328 31.459 1 38.14 ? C3 GDL 98 B 1 HETATM 4 C C4 GDL . . . G 2 -6.435 -6.126 32.413 1 38.3 ? C4 GDL 98 B 1 HETATM 5 C C5 GDL . . . G 2 -6.845 -4.81 31.736 1 39.37 ? C5 GDL 98 B 1 HETATM 6 C C6 GDL . . . G 2 -6.69 -3.556 32.596 1 38.86 ? C6 GDL 98 B 1 HETATM 7 C C7 GDL . . . G 2 -4.914 -8.525 28.468 1 37.66 ? C7 GDL 98 B 1 HETATM 8 C C8 GDL . . . G 2 -5.169 -9.679 27.519 1 36.21 ? C8 GDL 98 B 1 HETATM 9 N N2 GDL . . . G 2 -5.925 -8.13 29.256 1 36.91 ? N2 GDL 98 B 1 HETATM 10 O O1 GDL . . . G 2 -6.413 -5.498 28.496 1 38.94 ? O1 GDL 98 B 1 HETATM 11 O O3 GDL . . . G 2 -5.74 -8.419 32.038 1 38.71 ? O3 GDL 98 B 1 HETATM 12 O O4 GDL . . . G 2 -7.33 -6.394 33.501 1 36.96 ? O4 GDL 98 B 1 HETATM 13 O O5 GDL . . . G 2 -6.08 -4.556 30.554 1 39.54 ? O5 GDL 98 B 1 HETATM 14 O O6 GDL . . . G 2 -7.421 -2.503 31.94 1 35.98 ? O6 GDL 98 B 1 HETATM 15 O O7 GDL . . . G 2 -3.817 -7.983 28.523 1 36.05 ? O7 GDL 98 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #