data_3KIH
#
_model_server_result.job_id            H49-yV2LKe--bVTX6aF88w 
_model_server_result.datetime_utc      '2024-11-25 15:27:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kih 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":98}' 
#
_entry.id    3KIH 
#
_exptl.entry_id    3KIH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              219.192 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-(acetylamido)-2-deoxy-D-glucono-1,5-lactone 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          122.9 
_cell.angle_gamma         90 
_cell.entry_id            3KIH 
_cell.length_a            125.566 
_cell.length_b            56.418 
_cell.length_c            86.306 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KIH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
#
_chem_comp.formula           'C8 H13 N O6' 
_chem_comp.formula_weight    219.192 
_chem_comp.id                GDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-(acetylamido)-2-deoxy-D-glucono-1,5-lactone 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     2-ACETAMIDO-2-DEOXY-D-GLUCONO-1,5-LACTONE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 GDL sing 70 n n 
C1 O1 GDL doub 71 n n 
C1 O5 GDL sing 72 n n 
C2 C3 GDL sing 73 n n 
C2 N2 GDL sing 74 n n 
C2 H2 GDL sing 75 n n 
C3 C4 GDL sing 76 n n 
C3 O3 GDL sing 77 n n 
C3 H3 GDL sing 78 n n 
C4 C5 GDL sing 79 n n 
C4 O4 GDL sing 80 n n 
C4 H4 GDL sing 81 n n 
C5 C6 GDL sing 82 n n 
C5 O5 GDL sing 83 n n 
C5 H5 GDL sing 84 n n 
C6 O6 GDL sing 85 n n 
C6 H61 GDL sing 86 n n 
C6 H62 GDL sing 87 n n 
C7 C8 GDL sing 88 n n 
C7 N2 GDL sing 89 n n 
C7 O7 GDL doub 90 n n 
C8 H81 GDL sing 91 n n 
C8 H82 GDL sing 92 n n 
C8 H83 GDL sing 93 n n 
N2 HN2 GDL sing 94 n n 
O3 HO3 GDL sing 95 n n 
O4 HO4 GDL sing 96 n n 
O6 HO6 GDL sing 97 n n 
#
_atom_sites.entry_id                     3KIH 
_atom_sites.fract_transf_matrix[1][1]    0.007964 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005152 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017725 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0138 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 GDL A 1 98 98 GDL NDG . 
G 2 GDL B 1 98 98 GDL NDG . 
H 2 GDL C 1 98 98 GDL NDG . 
I 2 GDL D 1 98 98 GDL NDG . 
J 3 HOH B 1 99 3 HOH HOH . 
J 3 HOH B 2 100 7 HOH HOH . 
J 3 HOH B 3 101 8 HOH HOH . 
K 3 HOH D 1 99 2 HOH HOH . 
K 3 HOH D 2 100 4 HOH HOH . 
K 3 HOH D 3 101 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GDL . . . H 2 39.468 -14.803 5.837 1 51.89 ? C1 GDL 98 C 1 
HETATM 2 C C2 GDL . . . H 2 38.034 -14.648 5.436 1 52.05 ? C2 GDL 98 C 1 
HETATM 3 C C3 GDL . . . H 2 37.29 -14.177 6.67 1 51.88 ? C3 GDL 98 C 1 
HETATM 4 C C4 GDL . . . H 2 37.554 -15.099 7.873 1 51.88 ? C4 GDL 98 C 1 
HETATM 5 C C5 GDL . . . H 2 38.984 -15.62 8.067 1 51.74 ? C5 GDL 98 C 1 
HETATM 6 C C6 GDL . . . H 2 38.92 -16.964 8.781 1 51.62 ? C6 GDL 98 C 1 
HETATM 7 C C7 GDL . . . H 2 37.281 -14.115 3.205 1 52.53 ? C7 GDL 98 C 1 
HETATM 8 C C8 GDL . . . H 2 37.058 -13.059 2.162 1 51.81 ? C8 GDL 98 C 1 
HETATM 9 N N2 GDL . . . H 2 37.776 -13.689 4.373 1 52.81 ? N2 GDL 98 C 1 
HETATM 10 O O1 GDL . . . H 2 40.382 -14.155 5.357 1 52.01 ? O1 GDL 98 C 1 
HETATM 11 O O3 GDL . . . H 2 35.892 -14.151 6.368 1 50.57 ? O3 GDL 98 C 1 
HETATM 12 O O4 GDL . . . H 2 37.276 -14.35 9.05 1 51.53 ? O4 GDL 98 C 1 
HETATM 13 O O5 GDL . . . H 2 39.746 -15.786 6.863 1 51.85 ? O5 GDL 98 C 1 
HETATM 14 O O6 GDL . . . H 2 40.159 -17.19 9.451 1 50.79 ? O6 GDL 98 C 1 
HETATM 15 O O7 GDL . . . H 2 37.021 -15.294 2.999 1 52.89 ? O7 GDL 98 C 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           15 
#